IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1453	 24.92	0	1491861..1492169	-	102	157737724	-	Abu_1483	-	putative transcriptional regulator
1454	 25.03	0	1492319..1493944	+	541	157737725	-	Abu_1484	-	hypothetical protein
1455	 25.40	0	1493979..1494356	+	125	157737726	-	Abu_1485	-	hypothetical protein
1456	 24.89	0	1494359..1494832	+	157	157737727	-	Abu_1486	-	hypothetical protein
1457	 27.49	0	1494858..1497098	-	746	157737728	-	Abu_1487	-	methyl-accepting chemotaxis protein
1458	 27.01	0	1497253..1498059	+	268	157737729	rnhA	Abu_1488	-	ribonuclease HI
1459	 29.31	0	1498111..1499079	+	322	157737730	-	Abu_1489	-	HMGL family protein
1460	 25.41	0	1499107..1499409	-	100	157737731	-	Abu_1490	-	hypothetical protein
1461	 27.49	0	1499449..1499859	-	136	157737732	-	Abu_1491	-	hypothetical protein
1462	 27.41	0	1499985..1501250	-	421	157737733	dinP	Abu_1492	-	DNA polymerase IV
1463	 28.40	0	1501325..1502560	-	411	157737734	moeA1	Abu_1493	-	molybdenum cofactor biosynthesis protein A
1464	 23.88	0	1502570..1503553	-	327	157737735	-	Abu_1494	-	cysteine desulfurase
1465	 28.18	0	1503546..1504379	-	277	157737736	fdhD	Abu_1495	-	formate dehydrogenase accessory protein
1466	 29.38	0	1504376..1505335	-	319	157737737	fdhC	Abu_1496	-	putative FdhC protein
1467	 34.18	+2	1505344..1505937	-	197	157737738	fdhB1	Abu_1497	-	formate dehydrogenase, iron-sulfur subunit FdhB
1468	 34.19	+2	1505948..1508749	-	933	157738530	-	Abu_1498	-	formate dehydrogenase, large subunit FdhA
1469	 37.78	+2	1508775..1508999	-	74	157737739	-	Abu_1499	-	hypothetical protein
1470	 25.98	0	1509082..1509693	-	203	157737740	-	Abu_1500	-	hypothetical protein
1471	 26.58	0	1509686..1511359	-	557	157737741	-	Abu_1501	-	4Fe-4S ferredoxin, iron-sulfur binding
1472	 23.20	-1	1511506..1512660	+	384	157737742	livJ	Abu_1502	-	leucine/isoleucine/valine-binding protein
1473	 21.44	-1	1512657..1514228	+	523	157737743	-	Abu_1503	-	two-component sensor histidine kinase
1474	 22.27	-1	1514236..1514895	+	219	157737744	-	Abu_1504	-	two-component response regulator
1475	 28.95	0	1514888..1516141	+	417	157737745	-	Abu_1505	-	Mn2+/Fe2+ transporter
1476	 24.47	0	1516142..1516423	-	93	157737746	-	Abu_1506	-	heavy-metal transporting ATPase
1477	 22.32	-1	1516427..1516753	-	108	157737747	-	Abu_1507	-	heavy-metal transport protein
1478	 29.41	0	1516750..1517844	-	364	157737748	-	Abu_1508	-	transglutaminase family protein
1479	 29.21	0	1518048..1518992	-	314	157737749	-	Abu_1509	-	putative FdhC protein
1480	 34.18	+2	1519001..1519594	-	197	157737750	fdhB2	Abu_1510	-	formate dehydrogenase, iron-sulfur subunit FdhB
1481	 34.51	+2	1519605..1522403	-	932	157737751	fdhA2	Abu_1511	-	formate dehydrogenase, large subunit FdhA (cysteine containing)
1482	 34.67	+2	1522425..1522649	-	74	157737752	-	Abu_1512	-	formate dehydrogenase subunit E, putative
1483	 31.98	+1	1523138..1524175	+	345	157737753	selD	Abu_1513	-	selenide, water dikinase
1484	 22.88	-1	1524217..1524771	-	184	157737754	-	Abu_1514	-	hypothetical protein
1485	 29.02	0	1524949..1525527	+	192	157737755	-	Abu_1515	-	hypothetical protein
1486	 32.06	+1	1525578..1526207	+	209	157737756	-	Abu_1516	-	hypothetical protein
1487	 27.27	0	1526219..1526482	+	87	157737757	-	Abu_1517	-	hypothetical protein
1488	 22.13	-1	1526484..1526858	+	124	157737758	-	Abu_1518	-	hypothetical protein
1489	 28.30	0	1526869..1527921	+	350	157737759	-	Abu_1519	-	hypothetical protein
1490	 30.45	0	1527931..1528416	+	161	157737760	-	Abu_1520	-	phage-related lysozyme
1491	 29.87	0	1528474..1528848	-	124	157737761	-	Abu_1521	-	hypothetical protein
1492	 27.25	0	1528907..1529317	-	136	157737762	-	Abu_1522	-	Sel1 repeat-containing protein
1493	 26.11	0	1529610..1530965	+	451	157737763	selA	Abu_1524	-	selenocysteine synthase
1494	 25.96	0	1530965..1532794	+	609	157737764	selB	Abu_1525	-	selenocysteine-specific elongation factor
1495	 23.96	0	1532798..1534312	+	504	157737765	-	Abu_1526	-	putative DNA helicase
1496	 22.04	-1	1534309..1535247	+	312	157737766	-	Abu_1527	-	hypothetical protein
1497	 23.79	0	1535244..1537307	+	687	157737767	-	Abu_1528	-	hypothetical protein
1498	 21.47	-1	1537354..1538280	+	308	157737768	-	Abu_1529	-	hypothetical protein
1499	 23.07	-1	1538365..1540536	+	723	157737769	-	Abu_1530	-	hypothetical protein
1500	 26.77	0	1540576..1541322	+	248	157737770	-	Abu_1531	-	hypothetical protein
1501	 23.96	0	1541809..1543707	-	632	157737771	-	Abu_1536	-	two-component sensor histidine kinase
1502	 30.59	+1	1543848..1544357	+	169	157737772	-	Abu_1537	-	putative FMN reductase
1503	 26.58	0	1544415..1545791	+	458	157737773	-	Abu_1538	-	PhoH family protein
1504	 23.44	-1	1545860..1547476	+	538	157737774	-	Abu_1539	-	hypothetical protein
1505	 22.73	-1	1547479..1549326	-	615	157737775	-	Abu_1540	-	EAL/PAS/GGDEF domain-containing protein
1506	 30.67	+1	1549302..1549940	+	212	157737776	pdxH	Abu_1541	-	pyridoxamine 5'-phosphate oxidase
1507	 23.65	0	1549946..1552063	-	705	157737777	-	Abu_1542	-	GGDEF/PAS domain-containing protein
1508	 25.79	0	1552101..1553465	-	454	157737778	dbpA	Abu_1543	-	ATP-dependent RNA helicase DbpA
1509	 26.40	0	1553468..1554001	-	177	157737779	-	Abu_1544	-	hypothetical protein
1510	 28.44	0	1554096..1554953	+	285	157737780	-	Abu_1545	-	hypothetical protein
1511	 23.93	0	1554974..1555558	-	194	157737781	-	Abu_1546	-	hypothetical protein
1512	 30.04	0	1555695..1557605	-	636	157737782	htpG	Abu_1547	-	heat shock protein 90
1513	 34.33	+2	1557824..1560031	+	735	157737783	katG	Abu_1548	-	catalase/peroxidase HPI
1514	 29.14	0	1560142..1562025	+	627	157737784	ciaB	Abu_1549	-	CiaB protein
1515	 25.69	0	1562038..1562508	-	156	157737785	-	Abu_1550	-	ankyrin repeat-containing protein
1516	 25.88	0	1562530..1565184	-	884	157737786	pqiB	Abu_1551	-	paraquat-inducible protein B
1517	 29.43	0	1566462..1566896	+	144	157737787	-	Abu_1553	-	hypothetical protein
1518	 25.43	0	1566969..1569524	+	851	157737788	-	Abu_1554	-	EAL/GGDEF domain-containing protein
1519	 28.99	0	1569535..1570017	-	160	157737789	-	Abu_1555	-	hypothetical protein
1520	 25.48	0	1570121..1571062	+	313	157737790	-	Abu_1556	-	hypothetical protein
1521	 29.49	0	1571397..1571864	-	155	157737791	-	Abu_1557	-	hypothetical protein
1522	 30.10	0	1571993..1572580	+	195	157737792	-	Abu_1558	-	hypothetical protein
1523	 26.07	0	1572582..1573655	-	357	157737793	-	Abu_1559	-	putative DNA alkylation repair enzyme
1524	 22.42	-1	1573664..1574524	-	286	157737794	-	Abu_1560	-	putative DNA-binding protein
1525	 22.34	-1	1574592..1575956	-	454	157737795	-	Abu_1561	-	hypothetical protein
1526	 29.30	0	1575967..1576611	-	214	157737796	-	Abu_1562	-	ThiJ/PfpI family transcriptional regulator
1527	 28.94	0	1576789..1577448	+	219	157737797	-	Abu_1563	-	hypothetical protein
1528	 29.55	0	1577728..1580109	-	793	157737798	-	Abu_1564	-	TonB-dependent receptor protein
1529	 23.11	-1	1580277..1580501	+	74	157737799	hicA	Abu_1565	-	Hif-contiguous protein A
1530	 26.67	0	1580525..1580869	+	114	157737800	hicB	Abu_1566	-	Hif-contiguous protein B
1531	 24.51	0	1580874..1581848	-	324	157737801	-	Abu_1567	-	sigma factor regulatory protein FecR/PupR family
1532	 27.43	0	1581849..1582322	-	157	157737802	-	Abu_1568	-	ECF subfamily RNA polymerase sigma factor
1533	 33.62	+1	1582459..1583520	+	353	157737803	speB	Abu_1569	-	arginase
1534	 30.03	0	1583543..1584844	-	433	157737804	leuA2	Abu_1570	-	2-isopropylmalate synthase
1535	 24.05	0	1585025..1585810	-	261	157737805	-	Abu_1571	-	AraC family transcriptional regulator
1536	 23.94	0	1585820..1586149	-	109	157737806	-	Abu_1572	-	PemK family transcriptional regulator
1537	 25.29	0	1586143..1586403	-	86	157737807	-	Abu_1573	-	hypothetical protein
1538	 23.58	0	1586472..1587425	-	317	157737808	-	Abu_1574	-	AraC family transcriptional regulator
1539	 26.72	0	1587544..1589661	+	705	157737809	-	Abu_1575	-	TonB-dependent receptor protein
1540	 33.33	+1	1589687..1590262	-	191	157737810	sodB	Abu_1576	-	superoxide dismutase
1541	 25.81	0	1590340..1591548	-	402	157737811	-	Abu_1577	-	hypothetical protein
1542	 32.57	+1	1591620..1592540	-	306	157737812	ppa	Abu_1578	-	putative manganese-dependent inorganic pyrophosphatase
1543	 29.67	0	1592660..1593259	-	199	157737813	-	Abu_1579	-	hypothetical protein
1544	 25.56	0	1593265..1593804	-	179	157737814	-	Abu_1580	-	putative asparaginase
1545	 29.14	0	1593755..1595161	-	468	157737815	aspA	Abu_1581	-	aspartate ammonia-lyase
1546	 22.17	-1	1595227..1595907	-	226	157737816	-	Abu_1582	-	two-component response regulator
1547	 23.64	0	1595910..1597034	-	374	157737817	-	Abu_1583	-	two-component sensor histidine kinase
1548	 29.78	0	1597106..1598542	-	478	157737818	-	Abu_1584	-	sodium:alanine symporter
1549	 30.17	0	1598675..1599370	-	231	157737819	pfs	Abu_1585	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1550	 29.57	0	1599363..1600292	-	309	157737820	fabD	Abu_1586	-	malonyl coenzyme A-(acyl carrier protein) transacylase
1551	 36.56	+2	1600427..1601014	-	195	157737821	slyD	Abu_1587	-	peptidyl-prolyl cis-trans isomerase
1552	 28.47	0	1601036..1601980	-	314	157737822	-	Abu_1588	-	hypothetical protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.