IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1391	 24.43	0	1419972..1420454	-	160	157737662	-	Abu_1421	-	hypothetical protein
1392	 29.21	0	1420480..1421739	-	419	157737663	-	Abu_1422	-	hypothetical protein
1393	 26.13	0	1422129..1424378	-	749	157737664	hypF	Abu_1423	-	transcriptional regulatory protein HypF
1394	 22.84	-1	1424409..1426028	-	539	157737665	-	Abu_1424	-	hypothetical protein
1395	 28.32	0	1426012..1426590	-	192	157737666	hydD	Abu_1425	-	Ni/Fe hydrogenase, expression/formation protein
1396	 27.33	0	1426572..1427237	-	221	157737667	hydC	Abu_1426	-	Ni/Fe hydrogenase, cytochrome b subunit
1397	 30.85	+1	1427259..1428989	-	576	157737668	hydB	Abu_1427	-	Ni/Fe-hydrogenase, large subunit
1398	 34.01	+2	1428979..1430157	-	392	157737669	hydA	Abu_1428	-	Ni/Fe-hydrogenase, small subunit
1399	 21.77	-1	1430395..1431354	-	319	157737670	-	Abu_1429	-	sigma factor regulatory protein FecR/PupR family
1400	 24.11	0	1431357..1431833	-	158	157737671	-	Abu_1430	-	ECF subfamily RNA polymerase sigma factor
1401	 23.66	0	1431933..1433483	-	516	157737672	-	Abu_1431	-	hypothetical protein
1402	 25.38	0	1433449..1434039	-	196	157737673	hyaD	Abu_1432	-	Ni/Fe hydrogenase, expression/formation protein
1403	 31.55	+1	1434128..1434856	-	242	157737674	hyaC	Abu_1433	-	Ni/Fe hydrogenase, cytochrome b subunit
1404	 33.45	+1	1434834..1436576	-	580	157737675	hyaB	Abu_1434	-	Ni/Fe-hydrogenase, large subunit
1405	 36.25	+2	1436576..1437811	-	411	157737676	hyaA	Abu_1435	-	Ni/Fe-hydrogenase, small subunit
1406	 25.78	0	1438045..1439394	-	449	157737677	hupL	Abu_1436	-	Ni/Fe-dependent hydrogenase, large subunit
1407	 27.85	0	1439397..1440290	-	297	157737678	hupS	Abu_1437	-	Ni/Fe-dependent hydrogenase, small subunit
1408	 27.10	0	1440280..1440744	-	154	157737679	-	Abu_1438	-	TetR family transcriptional regulator
1409	 33.57	+1	1440982..1443558	-	858	157737680	acnB	Abu_1439	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1410	 24.26	0	1443817..1444257	+	146	157737681	-	Abu_1440	-	thioesterase/acetyltransferase, putative
1411	 24.70	0	1444247..1445242	-	331	157737682	-	Abu_1441	-	GGDEF/PAS domain-containing protein
1412	 30.92	+1	1445461..1446207	-	248	157737683	-	Abu_1442	-	hypothetical protein
1413	 27.42	0	1446307..1447050	+	247	157737684	-	Abu_1443	-	VacJ-like lipoprotein
1414	 23.01	-1	1447054..1447644	+	196	157737685	-	Abu_1444	-	putative periplasmic protein
1415	 24.97	0	1447644..1450130	+	828	157737686	-	Abu_1445	-	hypothetical protein
1416	 26.60	0	1450130..1450693	+	187	157737687	-	Abu_1446	-	lysine decarboxylase-like protein
1417	 25.63	0	1450870..1451505	+	211	157737688	-	Abu_1447	-	HAD-superfamily hydrolase
1418	 24.87	0	1451502..1452068	-	188	157737689	-	Abu_1448	-	putative lipoprotein thiredoxin
1419	 25.15	0	1452081..1452728	-	215	157737690	dsbA	Abu_1449	-	DSBA-like thioredoxin domain-containing protein
1420	 26.03	0	1452718..1453128	-	136	157737691	dsbB	Abu_1450	-	DsbB family disulfide bond formation protein
1421	 31.20	+1	1453217..1455742	+	841	157737692	-	Abu_1451	-	glycosyltransferase
1422	 24.89	0	1455844..1456317	+	157	157737693	-	Abu_1452	-	ECF subfamily RNA polymerase sigma factor
1423	 23.69	0	1456317..1457156	+	279	157737694	-	Abu_1453	-	sigma factor regulatory protein FecR/PupR family
1424	 29.27	0	1457255..1459570	+	771	157737695	-	Abu_1454	-	TonB-dependent receptor protein
1425	 23.96	0	1459749..1461188	+	479	157737696	-	Abu_1455	-	GGDEF domain-containing protein
1426	 25.76	0	1461133..1462083	+	316	157737697	-	Abu_1456	-	hypothetical protein
1427	 30.92	+1	1462103..1464088	-	661	157737698	betT	Abu_1457	-	high-affinity choline transport
1428	 26.53	0	1464222..1465838	-	538	157737699	kefB	Abu_1458	-	glutathione-regulated potassium-efflux system protein KefB
1429	 25.16	0	1465956..1466261	+	101	157737700	-	Abu_1459	-	hypothetical protein
1430	 32.62	+1	1466335..1467597	+	420	157737701	glyA2	Abu_1460	-	serine hydroxymethyltransferase
1431	 28.74	0	1467624..1468451	+	275	157737702	ada	Abu_1461	-	O6-methylguanine-DNA methyltransferase
1432	 24.93	0	1468452..1469165	+	237	157737703	-	Abu_1462	-	endonuclease III
1433	 23.12	-1	1469145..1469624	-	159	157737704	-	Abu_1463	-	ribonuclease H-like protein
1434	 22.11	-1	1469661..1469954	-	97	157737705	-	Abu_1464	-	hypothetical protein
1435	 25.12	0	1469951..1470157	-	68	157737706	-	Abu_1465	-	hypothetical protein
1436	 28.06	0	1470264..1470737	-	157	157737707	-	Abu_1466	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1437	 31.79	+1	1470917..1472086	+	389	157737708	benE	Abu_1467	-	benzoate membrane transport protein
1438	 25.66	0	1472128..1473300	-	390	157737709	argD2	Abu_1468	-	acetylornithine aminotransferase
1439	 27.35	0	1473313..1474014	-	233	157737710	-	Abu_1469	-	hypothetical protein
1440	 30.14	0	1474095..1474970	-	291	157737711	lipA	Abu_1470	-	lipoyl synthase
1441	 26.24	0	1474982..1475686	-	234	157737712	-	Abu_1471	-	biotin/lipoate A/B protein ligase family protein
1442	 31.76	+1	1475844..1478516	+	890	157737713	aceE	Abu_1472	-	pyruvate dehydrogenase subunit E1
1443	 30.74	+1	1478527..1480182	+	551	157737714	aceF	Abu_1473	-	dihydrolipoamide acetyltransferase
1444	 34.24	+2	1480192..1481625	+	477	157737715	lpdA	Abu_1474	-	dihydrolipoamide dehydrogenase
1445	 28.53	0	1481727..1482392	+	221	157737716	-	Abu_1475	-	glutamine amidotransferase, class I
1446	 29.23	0	1482503..1484842	-	779	157737717	-	Abu_1476	-	TonB-dependent receptor protein
1447	 24.97	0	1485112..1485960	-	282	157737718	-	Abu_1477	-	aldose 1-epimerase family protein, LacX
1448	 25.98	0	1485957..1486718	-	253	157737719	-	Abu_1478	-	beta-lactamase, putative
1449	 29.89	0	1486769..1488076	-	435	157737720	rhlE	Abu_1479	-	ATP-dependent RNA helicase RhlE
1450	 28.22	0	1488347..1489540	+	397	157737721	-	Abu_1480	-	hypothetical protein
1451	 27.73	0	1489715..1490695	+	326	157737722	-	Abu_1481	-	DNA (cytosine-5-)-methyltransferase
1452	 20.63	-1	1490703..1491710	+	335	157737723	-	Abu_1482	-	hypothetical protein
1453	 24.92	0	1491861..1492169	-	102	157737724	-	Abu_1483	-	putative transcriptional regulator
1454	 25.03	0	1492319..1493944	+	541	157737725	-	Abu_1484	-	hypothetical protein
1455	 25.40	0	1493979..1494356	+	125	157737726	-	Abu_1485	-	hypothetical protein
1456	 24.89	0	1494359..1494832	+	157	157737727	-	Abu_1486	-	hypothetical protein
1457	 27.49	0	1494858..1497098	-	746	157737728	-	Abu_1487	-	methyl-accepting chemotaxis protein
1458	 27.01	0	1497253..1498059	+	268	157737729	rnhA	Abu_1488	-	ribonuclease HI
1459	 29.31	0	1498111..1499079	+	322	157737730	-	Abu_1489	-	HMGL family protein
1460	 25.41	0	1499107..1499409	-	100	157737731	-	Abu_1490	-	hypothetical protein
1461	 27.49	0	1499449..1499859	-	136	157737732	-	Abu_1491	-	hypothetical protein
1462	 27.41	0	1499985..1501250	-	421	157737733	dinP	Abu_1492	-	DNA polymerase IV
1463	 28.40	0	1501325..1502560	-	411	157737734	moeA1	Abu_1493	-	molybdenum cofactor biosynthesis protein A
1464	 23.88	0	1502570..1503553	-	327	157737735	-	Abu_1494	-	cysteine desulfurase
1465	 28.18	0	1503546..1504379	-	277	157737736	fdhD	Abu_1495	-	formate dehydrogenase accessory protein
1466	 29.38	0	1504376..1505335	-	319	157737737	fdhC	Abu_1496	-	putative FdhC protein
1467	 34.18	+2	1505344..1505937	-	197	157737738	fdhB1	Abu_1497	-	formate dehydrogenase, iron-sulfur subunit FdhB
1468	 34.19	+2	1505948..1508749	-	933	157738530	-	Abu_1498	-	formate dehydrogenase, large subunit FdhA
1469	 37.78	+2	1508775..1508999	-	74	157737739	-	Abu_1499	-	hypothetical protein
1470	 25.98	0	1509082..1509693	-	203	157737740	-	Abu_1500	-	hypothetical protein
1471	 26.58	0	1509686..1511359	-	557	157737741	-	Abu_1501	-	4Fe-4S ferredoxin, iron-sulfur binding
1472	 23.20	-1	1511506..1512660	+	384	157737742	livJ	Abu_1502	-	leucine/isoleucine/valine-binding protein
1473	 21.44	-1	1512657..1514228	+	523	157737743	-	Abu_1503	-	two-component sensor histidine kinase
1474	 22.27	-1	1514236..1514895	+	219	157737744	-	Abu_1504	-	two-component response regulator
1475	 28.95	0	1514888..1516141	+	417	157737745	-	Abu_1505	-	Mn2+/Fe2+ transporter
1476	 24.47	0	1516142..1516423	-	93	157737746	-	Abu_1506	-	heavy-metal transporting ATPase
1477	 22.32	-1	1516427..1516753	-	108	157737747	-	Abu_1507	-	heavy-metal transport protein
1478	 29.41	0	1516750..1517844	-	364	157737748	-	Abu_1508	-	transglutaminase family protein
1479	 29.21	0	1518048..1518992	-	314	157737749	-	Abu_1509	-	putative FdhC protein
1480	 34.18	+2	1519001..1519594	-	197	157737750	fdhB2	Abu_1510	-	formate dehydrogenase, iron-sulfur subunit FdhB
1481	 34.51	+2	1519605..1522403	-	932	157737751	fdhA2	Abu_1511	-	formate dehydrogenase, large subunit FdhA (cysteine containing)
1482	 34.67	+2	1522425..1522649	-	74	157737752	-	Abu_1512	-	formate dehydrogenase subunit E, putative
1483	 31.98	+1	1523138..1524175	+	345	157737753	selD	Abu_1513	-	selenide, water dikinase
1484	 22.88	-1	1524217..1524771	-	184	157737754	-	Abu_1514	-	hypothetical protein
1485	 29.02	0	1524949..1525527	+	192	157737755	-	Abu_1515	-	hypothetical protein
1486	 32.06	+1	1525578..1526207	+	209	157737756	-	Abu_1516	-	hypothetical protein
1487	 27.27	0	1526219..1526482	+	87	157737757	-	Abu_1517	-	hypothetical protein
1488	 22.13	-1	1526484..1526858	+	124	157737758	-	Abu_1518	-	hypothetical protein
1489	 28.30	0	1526869..1527921	+	350	157737759	-	Abu_1519	-	hypothetical protein
1490	 30.45	0	1527931..1528416	+	161	157737760	-	Abu_1520	-	phage-related lysozyme
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.