IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1366	 24.24	0	1398139..1398534	-	131	157737637	-	Abu_1396	-	hypothetical protein
1367	 23.47	-1	1398569..1398781	-	70	157737638	-	Abu_1397	-	hypothetical protein
1368	 21.03	-1	1398778..1398972	-	64	157737639	-	Abu_1398	-	hypothetical protein
1369	 22.71	-1	1399022..1399435	-	137	157737640	-	Abu_1399	-	hypothetical protein
1370	 31.72	+1	1399509..1399880	-	123	157737641	hypA	Abu_1400	-	hydrogenase expression/formation protein HypA
1371	 32.83	+1	1399984..1400982	-	332	157737642	hypE	Abu_1401	-	hydrogenase expression/formation protein HypE
1372	 29.41	0	1400983..1401339	-	118	157737643	-	Abu_1402	-	hypothetical protein
1373	 31.57	+1	1401349..1402197	-	282	157737644	-	Abu_1403	-	3-hydroxyisobutyrate dehydrogenase family protein
1374	 21.96	-1	1402194..1403705	-	503	157737645	-	Abu_1404	-	McrBC endonuclease McrB, putative
1375	 21.39	-1	1403698..1404861	-	387	157737646	-	Abu_1405	-	McrBC catalytic subunit McrC, putative
1376	 28.62	0	1404870..1405994	-	374	157737647	hypD	Abu_1406	-	hydrogenase expression/formation protein HypD
1377	 30.14	0	1406008..1406289	-	93	157737648	hypC	Abu_1407	-	hydrogenase expression/formation protein HypC
1378	 30.66	+1	1406415..1407236	-	273	157737649	hypB	Abu_1408	-	hydrogenase expression/formation protein HypB
1379	 23.36	-1	1407348..1407989	+	213	157737650	-	Abu_1409	-	hypothetical protein
1380	 27.76	0	1408077..1410050	+	657	157737651	-	Abu_1410	-	methyl-accepting chemotaxis protein
1381	 26.93	0	1410068..1410910	-	280	157737652	-	Abu_1411	-	hypothetical protein
1382	 30.34	0	1410925..1412160	-	411	157737653	-	Abu_1412	-	HI0933-like protein
1383	 28.27	0	1412237..1413343	+	368	157737654	-	Abu_1413	-	hypothetical protein
1384	 28.87	0	1413487..1414068	-	193	157737655	-	Abu_1414	-	hypothetical protein
1385	 24.10	0	1414101..1414880	-	259	157737656	-	Abu_1415	-	hypothetical protein
1386	 23.83	0	1414987..1415691	-	234	157737657	-	Abu_1416	-	hypothetical protein
1387	 23.76	0	1415828..1416130	+	100	157737658	-	Abu_1417	-	hypothetical protein
1388	 24.21	0	1416159..1418066	-	635	157737659	-	Abu_1418	-	hypothetical protein
1389	 29.11	0	1418151..1419617	-	488	157737660	thiI	Abu_1419	-	thiamine biosynthesis protein ThiI
1390	 28.68	0	1419705..1419962	+	85	157737661	-	Abu_1420	-	hypothetical protein
1391	 24.43	0	1419972..1420454	-	160	157737662	-	Abu_1421	-	hypothetical protein
1392	 29.21	0	1420480..1421739	-	419	157737663	-	Abu_1422	-	hypothetical protein
1393	 26.13	0	1422129..1424378	-	749	157737664	hypF	Abu_1423	-	transcriptional regulatory protein HypF
1394	 22.84	-1	1424409..1426028	-	539	157737665	-	Abu_1424	-	hypothetical protein
1395	 28.32	0	1426012..1426590	-	192	157737666	hydD	Abu_1425	-	Ni/Fe hydrogenase, expression/formation protein
1396	 27.33	0	1426572..1427237	-	221	157737667	hydC	Abu_1426	-	Ni/Fe hydrogenase, cytochrome b subunit
1397	 30.85	+1	1427259..1428989	-	576	157737668	hydB	Abu_1427	-	Ni/Fe-hydrogenase, large subunit
1398	 34.01	+2	1428979..1430157	-	392	157737669	hydA	Abu_1428	-	Ni/Fe-hydrogenase, small subunit
1399	 21.77	-1	1430395..1431354	-	319	157737670	-	Abu_1429	-	sigma factor regulatory protein FecR/PupR family
1400	 24.11	0	1431357..1431833	-	158	157737671	-	Abu_1430	-	ECF subfamily RNA polymerase sigma factor
1401	 23.66	0	1431933..1433483	-	516	157737672	-	Abu_1431	-	hypothetical protein
1402	 25.38	0	1433449..1434039	-	196	157737673	hyaD	Abu_1432	-	Ni/Fe hydrogenase, expression/formation protein
1403	 31.55	+1	1434128..1434856	-	242	157737674	hyaC	Abu_1433	-	Ni/Fe hydrogenase, cytochrome b subunit
1404	 33.45	+1	1434834..1436576	-	580	157737675	hyaB	Abu_1434	-	Ni/Fe-hydrogenase, large subunit
1405	 36.25	+2	1436576..1437811	-	411	157737676	hyaA	Abu_1435	-	Ni/Fe-hydrogenase, small subunit
1406	 25.78	0	1438045..1439394	-	449	157737677	hupL	Abu_1436	-	Ni/Fe-dependent hydrogenase, large subunit
1407	 27.85	0	1439397..1440290	-	297	157737678	hupS	Abu_1437	-	Ni/Fe-dependent hydrogenase, small subunit
1408	 27.10	0	1440280..1440744	-	154	157737679	-	Abu_1438	-	TetR family transcriptional regulator
1409	 33.57	+1	1440982..1443558	-	858	157737680	acnB	Abu_1439	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1410	 24.26	0	1443817..1444257	+	146	157737681	-	Abu_1440	-	thioesterase/acetyltransferase, putative
1411	 24.70	0	1444247..1445242	-	331	157737682	-	Abu_1441	-	GGDEF/PAS domain-containing protein
1412	 30.92	+1	1445461..1446207	-	248	157737683	-	Abu_1442	-	hypothetical protein
1413	 27.42	0	1446307..1447050	+	247	157737684	-	Abu_1443	-	VacJ-like lipoprotein
1414	 23.01	-1	1447054..1447644	+	196	157737685	-	Abu_1444	-	putative periplasmic protein
1415	 24.97	0	1447644..1450130	+	828	157737686	-	Abu_1445	-	hypothetical protein
1416	 26.60	0	1450130..1450693	+	187	157737687	-	Abu_1446	-	lysine decarboxylase-like protein
1417	 25.63	0	1450870..1451505	+	211	157737688	-	Abu_1447	-	HAD-superfamily hydrolase
1418	 24.87	0	1451502..1452068	-	188	157737689	-	Abu_1448	-	putative lipoprotein thiredoxin
1419	 25.15	0	1452081..1452728	-	215	157737690	dsbA	Abu_1449	-	DSBA-like thioredoxin domain-containing protein
1420	 26.03	0	1452718..1453128	-	136	157737691	dsbB	Abu_1450	-	DsbB family disulfide bond formation protein
1421	 31.20	+1	1453217..1455742	+	841	157737692	-	Abu_1451	-	glycosyltransferase
1422	 24.89	0	1455844..1456317	+	157	157737693	-	Abu_1452	-	ECF subfamily RNA polymerase sigma factor
1423	 23.69	0	1456317..1457156	+	279	157737694	-	Abu_1453	-	sigma factor regulatory protein FecR/PupR family
1424	 29.27	0	1457255..1459570	+	771	157737695	-	Abu_1454	-	TonB-dependent receptor protein
1425	 23.96	0	1459749..1461188	+	479	157737696	-	Abu_1455	-	GGDEF domain-containing protein
1426	 25.76	0	1461133..1462083	+	316	157737697	-	Abu_1456	-	hypothetical protein
1427	 30.92	+1	1462103..1464088	-	661	157737698	betT	Abu_1457	-	high-affinity choline transport
1428	 26.53	0	1464222..1465838	-	538	157737699	kefB	Abu_1458	-	glutathione-regulated potassium-efflux system protein KefB
1429	 25.16	0	1465956..1466261	+	101	157737700	-	Abu_1459	-	hypothetical protein
1430	 32.62	+1	1466335..1467597	+	420	157737701	glyA2	Abu_1460	-	serine hydroxymethyltransferase
1431	 28.74	0	1467624..1468451	+	275	157737702	ada	Abu_1461	-	O6-methylguanine-DNA methyltransferase
1432	 24.93	0	1468452..1469165	+	237	157737703	-	Abu_1462	-	endonuclease III
1433	 23.12	-1	1469145..1469624	-	159	157737704	-	Abu_1463	-	ribonuclease H-like protein
1434	 22.11	-1	1469661..1469954	-	97	157737705	-	Abu_1464	-	hypothetical protein
1435	 25.12	0	1469951..1470157	-	68	157737706	-	Abu_1465	-	hypothetical protein
1436	 28.06	0	1470264..1470737	-	157	157737707	-	Abu_1466	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1437	 31.79	+1	1470917..1472086	+	389	157737708	benE	Abu_1467	-	benzoate membrane transport protein
1438	 25.66	0	1472128..1473300	-	390	157737709	argD2	Abu_1468	-	acetylornithine aminotransferase
1439	 27.35	0	1473313..1474014	-	233	157737710	-	Abu_1469	-	hypothetical protein
1440	 30.14	0	1474095..1474970	-	291	157737711	lipA	Abu_1470	-	lipoyl synthase
1441	 26.24	0	1474982..1475686	-	234	157737712	-	Abu_1471	-	biotin/lipoate A/B protein ligase family protein
1442	 31.76	+1	1475844..1478516	+	890	157737713	aceE	Abu_1472	-	pyruvate dehydrogenase subunit E1
1443	 30.74	+1	1478527..1480182	+	551	157737714	aceF	Abu_1473	-	dihydrolipoamide acetyltransferase
1444	 34.24	+2	1480192..1481625	+	477	157737715	lpdA	Abu_1474	-	dihydrolipoamide dehydrogenase
1445	 28.53	0	1481727..1482392	+	221	157737716	-	Abu_1475	-	glutamine amidotransferase, class I
1446	 29.23	0	1482503..1484842	-	779	157737717	-	Abu_1476	-	TonB-dependent receptor protein
1447	 24.97	0	1485112..1485960	-	282	157737718	-	Abu_1477	-	aldose 1-epimerase family protein, LacX
1448	 25.98	0	1485957..1486718	-	253	157737719	-	Abu_1478	-	beta-lactamase, putative
1449	 29.89	0	1486769..1488076	-	435	157737720	rhlE	Abu_1479	-	ATP-dependent RNA helicase RhlE
1450	 28.22	0	1488347..1489540	+	397	157737721	-	Abu_1480	-	hypothetical protein
1451	 27.73	0	1489715..1490695	+	326	157737722	-	Abu_1481	-	DNA (cytosine-5-)-methyltransferase
1452	 20.63	-1	1490703..1491710	+	335	157737723	-	Abu_1482	-	hypothetical protein
1453	 24.92	0	1491861..1492169	-	102	157737724	-	Abu_1483	-	putative transcriptional regulator
1454	 25.03	0	1492319..1493944	+	541	157737725	-	Abu_1484	-	hypothetical protein
1455	 25.40	0	1493979..1494356	+	125	157737726	-	Abu_1485	-	hypothetical protein
1456	 24.89	0	1494359..1494832	+	157	157737727	-	Abu_1486	-	hypothetical protein
1457	 27.49	0	1494858..1497098	-	746	157737728	-	Abu_1487	-	methyl-accepting chemotaxis protein
1458	 27.01	0	1497253..1498059	+	268	157737729	rnhA	Abu_1488	-	ribonuclease HI
1459	 29.31	0	1498111..1499079	+	322	157737730	-	Abu_1489	-	HMGL family protein
1460	 25.41	0	1499107..1499409	-	100	157737731	-	Abu_1490	-	hypothetical protein
1461	 27.49	0	1499449..1499859	-	136	157737732	-	Abu_1491	-	hypothetical protein
1462	 27.41	0	1499985..1501250	-	421	157737733	dinP	Abu_1492	-	DNA polymerase IV
1463	 28.40	0	1501325..1502560	-	411	157737734	moeA1	Abu_1493	-	molybdenum cofactor biosynthesis protein A
1464	 23.88	0	1502570..1503553	-	327	157737735	-	Abu_1494	-	cysteine desulfurase
1465	 28.18	0	1503546..1504379	-	277	157737736	fdhD	Abu_1495	-	formate dehydrogenase accessory protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.