IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1289	 19.51	-2	1320446..1320850	-	134	157737560	-	Abu_1317	-	hypothetical protein
1290	 24.80	0	1320937..1322214	+	425	157737561	-	Abu_1318	-	hypothetical protein
1291	 19.71	-2	1322235..1322513	-	92	157737562	-	Abu_1319	-	hypothetical protein
1292	 27.02	0	1322506..1323408	-	300	157737563	mraW	Abu_1320	-	S-adenosyl-methyltransferase MraW
1293	 24.87	0	1323468..1324046	+	192	157737564	-	Abu_1321	-	hypothetical protein
1294	 35.14	+2	1324160..1324435	+	91	157737565	hup	Abu_1322	-	DNA-binding protein HU
1295	 24.96	0	1324763..1325980	+	405	157737566	-	Abu_1324	-	putative phage integrase
1296	 23.00	-1	1326728..1326940	-	70	157737567	-	Abu_1325	-	hypothetical protein
1297	 25.95	0	1327010..1327564	-	184	157737568	-	Abu_1326	-	hypothetical protein
1298	 28.32	0	1327649..1327987	-	112	157737569	-	Abu_1327	-	hypothetical protein
1299	 24.06	0	1328133..1328930	-	265	157737570	-	Abu_1328	-	hypothetical protein
1300	 23.64	0	1329234..1330316	+	360	157737571	-	Abu_1329	-	hypothetical protein
1301	 24.18	0	1330422..1330694	+	90	157737572	-	Abu_1330	-	hypothetical protein
1302	 25.88	0	1330793..1332832	-	679	157737573	-	Abu_1331	-	DEAD/DEAH box helicase domain-containing protein
1303	 25.90	0	1332825..1333994	-	389	157737574	-	Abu_1332	-	hypothetical protein
1304	 20.91	-1	1334418..1334747	-	109	157737575	-	Abu_1333	-	hypothetical protein
1305	 23.05	-1	1334980..1336623	+	547	157737576	-	Abu_1334	-	hypothetical protein
1306	 21.89	-1	1336697..1337893	+	398	157737577	-	Abu_1335	-	hypothetical protein
1307	 26.85	0	1338169..1341051	-	960	157737578	-	Abu_1336	-	hypothetical protein
1308	 26.07	0	1341053..1341355	-	100	157737579	-	Abu_1337	-	hypothetical protein
1309	 27.12	0	1341378..1341731	-	117	157737580	-	Abu_1338	-	hypothetical protein
1310	 23.46	-1	1341703..1342188	-	161	157737581	-	Abu_1339	-	hypothetical protein
1311	 29.41	0	1342190..1342699	-	169	157737582	-	Abu_1340	-	hypothetical protein
1312	 25.43	0	1342701..1344776	-	691	157737583	-	Abu_1341	-	hypothetical protein
1313	 25.86	0	1344778..1345620	-	280	157737584	-	Abu_1342	-	hypothetical protein
1314	 25.11	0	1345621..1346544	-	307	157737585	-	Abu_1343	-	hypothetical protein
1315	 22.74	-1	1346688..1347140	-	150	157737586	-	Abu_1344	-	hypothetical protein
1316	 24.13	0	1347152..1347553	-	133	157737587	-	Abu_1345	-	hypothetical protein
1317	 27.53	0	1347563..1348354	-	263	157737588	-	Abu_1346	-	hypothetical protein
1318	 27.86	0	1348534..1349172	-	212	157737589	-	Abu_1347	-	hypothetical protein
1319	 28.63	0	1349250..1349483	-	77	157737590	-	Abu_1348	-	hypothetical protein
1320	 25.68	0	1349495..1349716	-	73	157737591	-	Abu_1349	-	hypothetical protein
1321	 24.58	0	1349713..1350192	-	159	157737592	-	Abu_1350	-	hypothetical protein
1322	 30.93	+1	1350231..1350605	-	124	157737593	-	Abu_1351	-	hypothetical protein
1323	 25.39	0	1350938..1351390	+	150	157737594	-	Abu_1352	-	hypothetical protein
1324	 27.21	0	1351526..1351933	-	135	157737595	-	Abu_1353	-	hypothetical protein
1325	 32.17	+1	1352079..1354313	+	744	157737596	norB	Abu_1354	-	nitric oxide reductase, cytochrome b subunit
1326	 22.11	-1	1354345..1354914	-	189	157737597	-	Abu_1355	-	hypothetical protein
1327	 26.07	0	1354911..1356080	-	389	157737598	-	Abu_1356	-	D-amino acid oxidase domain-containing protein
1328	 26.98	0	1356077..1356391	-	104	157737599	-	Abu_1357	-	hypothetical protein
1329	 28.46	0	1356506..1356874	+	122	157737600	-	Abu_1358	-	response regulator receiver domain-containing protein
1330	 23.46	-1	1356874..1357491	+	205	157737601	-	Abu_1359	-	inhibitor of MCP methylation, CheC
1331	 23.76	0	1357488..1358981	+	497	157737602	-	Abu_1360	-	two-component sensor histidine kinase
1332	 29.66	0	1359058..1359927	+	289	157737603	cbpA	Abu_1361	-	curved DNA-binding protein CbpA
1333	 25.20	0	1359939..1360319	+	126	157737604	-	Abu_1362	-	MerR family transcriptional regulator
1334	 26.08	0	1360392..1361384	+	330	157737605	-	Abu_1363	-	HlyD family secretion protein
1335	 26.04	0	1361371..1363071	+	566	157737606	-	Abu_1364	-	ABC transporter, ATP-binding protein
1336	 26.08	0	1363072..1364160	+	362	157737607	-	Abu_1365	-	ABC transporter, permease protein
1337	 25.82	0	1364160..1365251	+	363	157737608	-	Abu_1366	-	ABC transporter, permease protein
1338	 26.85	0	1365252..1366331	-	359	157737609	-	Abu_1367	-	hypothetical protein
1339	 26.53	0	1366420..1367712	-	430	157737610	brnQ	Abu_1368	-	branched-chain amino acid transport system II carrier protein
1340	 20.40	-1	1367763..1368620	-	285	157737611	-	Abu_1369	-	hypothetical protein
1341	 24.32	0	1368801..1369244	-	147	157737612	-	Abu_1371	-	hypothetical protein
1342	 31.24	+1	1369244..1372489	-	1081	157737613	carB	Abu_1372	-	carbamoyl phosphate synthase large subunit
1343	 24.18	0	1372604..1373422	+	272	157737614	-	Abu_1373	-	polysaccharide deacetylase
1344	 28.40	0	1373437..1374732	-	431	157737615	nhaA1	Abu_1374	-	sodium:hydrogen antiporter
1345	 23.74	0	1374755..1374952	-	65	157737616	-	Abu_1375	-	hypothetical protein
1346	 28.65	0	1374949..1376058	-	369	157737617	metX	Abu_1376	-	homoserine O-acetyltransferase
1347	 26.89	0	1376169..1378526	-	785	157737618	-	Abu_1377	-	TonB-dependent receptor protein
1348	 23.48	-1	1378839..1379102	+	87	157737619	-	Abu_1378	-	hypothetical protein
1349	 31.31	+1	1379134..1380267	-	377	157737620	ftsZ	Abu_1379	-	cell division protein FtsZ
1350	 28.30	0	1380267..1381658	-	463	157737621	ftsA	Abu_1380	-	cell division protein FtsA
1351	 25.79	0	1381663..1383120	-	485	157737622	-	Abu_1381	-	hypothetical protein
1352	 26.12	0	1383183..1385510	-	775	157737623	recD	Abu_1382	-	exodeoxyribonuclease V, alpha subunit
1353	 20.49	-1	1385510..1385875	-	121	157737624	-	Abu_1383	-	hypothetical protein
1354	 26.78	0	1385872..1386222	-	116	157737625	-	Abu_1384	-	arsenate reductase
1355	 24.48	0	1386337..1387161	-	274	157737626	-	Abu_1385	-	hypothetical protein
1356	 20.96	-1	1387218..1387508	-	96	157737627	-	Abu_1386	-	hypothetical protein
1357	 24.24	0	1387495..1387725	-	76	157737628	-	Abu_1387	-	hypothetical protein
1358	 25.71	0	1387896..1389587	+	563	157737629	-	Abu_1388	-	hypothetical protein
1359	 27.02	0	1389590..1389874	+	94	157737630	-	Abu_1389	-	FlhB domain-containing protein
1360	 28.38	0	1389885..1391621	-	578	157737631	-	Abu_1390	-	ABC transporter, ATP-binding protein
1361	 24.12	0	1391727..1392236	+	169	157737632	-	Abu_1391	-	hypothetical protein
1362	 33.00	+1	1392273..1393460	-	395	157737633	dapD	Abu_1392	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD
1363	 26.80	0	1393562..1395565	-	667	157737634	-	Abu_1393	-	HAD-superfamily hydrolase
1364	 27.42	0	1395870..1396241	+	123	157737635	-	Abu_1394	-	hypothetical protein
1365	 26.68	0	1396292..1398139	-	615	157737636	priA	Abu_1395	-	primosome assembly protein PriA
1366	 24.24	0	1398139..1398534	-	131	157737637	-	Abu_1396	-	hypothetical protein
1367	 23.47	-1	1398569..1398781	-	70	157737638	-	Abu_1397	-	hypothetical protein
1368	 21.03	-1	1398778..1398972	-	64	157737639	-	Abu_1398	-	hypothetical protein
1369	 22.71	-1	1399022..1399435	-	137	157737640	-	Abu_1399	-	hypothetical protein
1370	 31.72	+1	1399509..1399880	-	123	157737641	hypA	Abu_1400	-	hydrogenase expression/formation protein HypA
1371	 32.83	+1	1399984..1400982	-	332	157737642	hypE	Abu_1401	-	hydrogenase expression/formation protein HypE
1372	 29.41	0	1400983..1401339	-	118	157737643	-	Abu_1402	-	hypothetical protein
1373	 31.57	+1	1401349..1402197	-	282	157737644	-	Abu_1403	-	3-hydroxyisobutyrate dehydrogenase family protein
1374	 21.96	-1	1402194..1403705	-	503	157737645	-	Abu_1404	-	McrBC endonuclease McrB, putative
1375	 21.39	-1	1403698..1404861	-	387	157737646	-	Abu_1405	-	McrBC catalytic subunit McrC, putative
1376	 28.62	0	1404870..1405994	-	374	157737647	hypD	Abu_1406	-	hydrogenase expression/formation protein HypD
1377	 30.14	0	1406008..1406289	-	93	157737648	hypC	Abu_1407	-	hydrogenase expression/formation protein HypC
1378	 30.66	+1	1406415..1407236	-	273	157737649	hypB	Abu_1408	-	hydrogenase expression/formation protein HypB
1379	 23.36	-1	1407348..1407989	+	213	157737650	-	Abu_1409	-	hypothetical protein
1380	 27.76	0	1408077..1410050	+	657	157737651	-	Abu_1410	-	methyl-accepting chemotaxis protein
1381	 26.93	0	1410068..1410910	-	280	157737652	-	Abu_1411	-	hypothetical protein
1382	 30.34	0	1410925..1412160	-	411	157737653	-	Abu_1412	-	HI0933-like protein
1383	 28.27	0	1412237..1413343	+	368	157737654	-	Abu_1413	-	hypothetical protein
1384	 28.87	0	1413487..1414068	-	193	157737655	-	Abu_1414	-	hypothetical protein
1385	 24.10	0	1414101..1414880	-	259	157737656	-	Abu_1415	-	hypothetical protein
1386	 23.83	0	1414987..1415691	-	234	157737657	-	Abu_1416	-	hypothetical protein
1387	 23.76	0	1415828..1416130	+	100	157737658	-	Abu_1417	-	hypothetical protein
1388	 24.21	0	1416159..1418066	-	635	157737659	-	Abu_1418	-	hypothetical protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.