IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1191	 23.87	0	1221727..1223385	+	552	157737462	slt	Abu_1216	-	soluble lytic murein transglycosylase (slt)
1192	 23.29	-1	1223354..1223851	-	165	157737463	-	Abu_1217	-	hypothetical protein
1193	 25.90	0	1223949..1224446	+	165	157737464	mobB	Abu_1218	-	molybdopterin-guanine dinucleotide biosynthesis protein
1194	 28.59	0	1224450..1225292	+	280	157737465	fbp	Abu_1219	-	fructose-1,6-bisphosphatase
1195	 27.54	0	1225285..1225491	+	68	157737466	-	Abu_1220	-	hypothetical protein
1196	 29.08	0	1225506..1227458	+	650	157737467	metS	Abu_1221	-	methionyl-tRNA synthetase
1197	 22.02	-1	1227458..1228456	+	332	157737468	-	Abu_1222	-	hypothetical protein
1198	 25.57	0	1228459..1229115	-	218	157737469	-	Abu_1223	-	S24 family peptidase
1199	 15.62	-2	1229225..1229320	+	31	157737470	-	Abu_1224	-	hypothetical protein
1200	 30.80	+1	1229441..1229716	+	91	157737471	-	Abu_1225	-	hypothetical protein
1201	 33.61	+1	1229723..1231555	+	610	157737472	pycB2	Abu_1226	-	pyruvate/oxaloacetate carboxyltransferase
1202	 29.97	0	1231629..1233206	+	525	157737473	pckA	Abu_1227	-	phosphoenolpyruvate carboxykinase
1203	 28.39	0	1233243..1234274	-	343	157737474	ribAB	Abu_1228	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1204	 27.53	0	1234734..1236749	-	671	157737475	glyS	Abu_1232	-	glycyl-tRNA synthetase subunit beta
1205	 19.50	-2	1236742..1236900	-	52	157737476	-	Abu_1233	-	hypothetical protein
1206	 22.92	-1	1236929..1237312	-	127	157737477	-	Abu_1234	-	hypothetical protein
1207	 23.47	-1	1237319..1237531	-	70	157737478	-	Abu_1235	-	hypothetical protein
1208	 24.96	0	1237528..1238112	-	194	157737479	gidB	Abu_1236	-	glucose-inhibited division protein B
1209	 27.78	0	1238112..1238687	-	191	157737480	ribA	Abu_1237	-	GTP cyclohydrolase II
1210	 30.67	+1	1238749..1239723	+	324	157737481	hemB	Abu_1238	-	delta-aminolevulinic acid dehydratase
1211	 23.80	0	1239732..1240811	+	359	157737482	-	Abu_1239	-	two-component sensor histidine kinase
1212	 22.02	-1	1240808..1241470	+	220	157737483	-	Abu_1240	-	two-component response regulator
1213	 23.55	0	1241447..1242151	-	234	157737484	-	Abu_1241	-	radical SAM domain-containing protein
1214	 26.06	0	1242102..1242266	-	54	157737485	-	Abu_1242	-	hypothetical protein
1215	 28.61	0	1242244..1244358	-	704	157737486	nrdD	Abu_1243	-	anaerobic ribonucleoside triphosphate reductase
1216	 31.83	+1	1244572..1245501	+	309	157737487	argF	Abu_1244	-	ornithine carbamoyltransferase
1217	 29.46	0	1245502..1246869	+	455	157737488	hemN2	Abu_1245	-	coproporphyrinogen III oxidase
1218	 19.75	-2	1246915..1247385	-	156	157737489	-	Abu_1246	-	hypothetical protein
1219	 20.19	-1	1247386..1247598	-	70	157737490	-	Abu_1247	-	hypothetical protein
1220	 23.07	-1	1247607..1248551	-	314	157737491	lpxK	Abu_1248	-	tetraacyldisaccharide 4'-kinase
1221	 28.06	0	1248558..1249694	-	378	157737492	-	Abu_1249	-	DegT/DnrJ/EryC1/StrS aminotransferase
1222	 28.76	0	1249691..1250455	-	254	157737493	nadE	Abu_1250	-	NH(3)-dependent NAD+ synthetase
1223	 19.72	-2	1250483..1250695	-	70	157737494	-	Abu_1251	-	hypothetical protein
1224	 28.00	0	1250703..1250927	-	74	157737495	-	Abu_1252	-	hypothetical protein
1225	 25.00	0	1250928..1251683	-	251	157737496	-	Abu_1253	-	DnaJ domain-containing protein
1226	 22.54	-1	1252683..1252997	+	104	157737497	-	Abu_1254	-	hypothetical protein
1227	 25.49	0	1253269..1253625	+	118	157737498	-	Abu_1255	-	hypothetical protein
1228	 30.90	+1	1253625..1254365	+	246	157737499	tatC	Abu_1256	-	Sec-independent protein secretion pathway component TatC
1229	 27.27	0	1254369..1255391	+	340	157737500	queA	Abu_1257	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1230	 27.55	0	1255402..1256145	+	247	157737501	dnaQ4	Abu_1258	-	DNA polymerase III, epsilon subunit
1231	 24.74	0	1256146..1256901	+	251	157737502	-	Abu_1259	-	hypothetical protein
1232	 20.06	-1	1256890..1258125	-	411	157737503	comE	Abu_1260	-	competence locus E
1233	 27.46	0	1258157..1258633	+	158	157737504	-	Abu_1261	-	hypothetical protein
1234	 25.43	0	1258642..1260654	-	670	157737505	-	Abu_1262	-	hypothetical protein
1235	 21.70	-1	1260665..1262899	-	744	157737506	-	Abu_1263	-	hypothetical protein
1236	 23.44	-1	1262886..1263461	-	191	157737507	-	Abu_1264	-	hypothetical protein
1237	 24.17	0	1263533..1264525	+	330	157737508	-	Abu_1265	-	hypothetical protein
1238	 29.79	0	1264624..1265922	+	432	157737509	glpC	Abu_1266	-	anaerobic glycerol-3-phosphate dehydrogenase, subunit C (glpC)
1239	 29.79	0	1265927..1266745	+	272	157737510	lgt	Abu_1267	-	prolipoprotein diacylglyceryl transferase
1240	 30.81	+1	1266746..1266943	-	65	157737511	-	Abu_1268	-	hypothetical protein
1241	 23.81	0	1266977..1267669	-	230	157737512	-	Abu_1269	-	two-component response regulator
1242	 25.86	0	1267741..1270431	-	896	157737513	polA	Abu_1270	-	DNA polymerase I
1243	 25.84	0	1270509..1271042	+	177	157737514	-	Abu_1271	-	acetyltransferase
1244	 27.19	0	1271065..1271796	+	243	157737515	kdsB	Abu_1272	-	3-deoxy-manno-octulosonate cytidylyltransferase
1245	 20.57	-1	1271800..1273734	+	644	157737516	-	Abu_1273	-	EAL/GGDEF domain-containing protein
1246	 29.74	0	1273746..1274468	-	240	157737517	-	Abu_1274	-	ABC transporter, ATP-binding protein
1247	 26.38	0	1274461..1274877	-	138	157737518	-	Abu_1275	-	hypothetical protein
1248	 32.11	+1	1274888..1275871	-	327	157737519	trpD	Abu_1276	-	anthranilate phosphoribosyltransferase
1249	 24.35	0	1276083..1276961	+	292	157737520	-	Abu_1277	-	hypothetical protein
1250	 24.10	0	1276971..1277219	-	82	157737521	-	Abu_1278	-	S4 domain-containing protein
1251	 30.60	+1	1277301..1278542	+	413	157737522	argG	Abu_1279	-	argininosuccinate synthase
1252	 24.36	0	1278586..1280022	-	478	157737523	dltA	Abu_1280	-	D-alanine activating enzyme
1253	 25.24	0	1280019..1281155	-	378	157737524	dltB	Abu_1281	-	D-alanyl transfer protein
1254	 20.57	-1	1281155..1281295	-	46	157737525	-	Abu_1282	-	hypothetical protein
1255	 24.11	0	1281306..1282433	-	375	157737526	dltD	Abu_1283	-	poly D-alanine transfer protein
1256	 23.25	-1	1282433..1282660	-	75	157737527	dltC	Abu_1284	-	D-alanyl carrier protein
1257	 29.94	0	1282806..1283306	+	166	157737528	-	Abu_1285	-	hypothetical protein
1258	 31.73	+1	1283686..1285182	+	498	157737529	-	Abu_1286	-	sulfate permease
1259	 26.31	0	1285185..1286024	+	279	157737530	uspA	Abu_1287	-	universal stress protein
1260	 23.81	0	1286688..1287338	-	216	157737531	ktrA	Abu_1288	-	TRK system potassium uptake protein TrkA, putative
1261	 25.51	0	1287335..1288663	-	442	157737532	ktrB	Abu_1289	-	TRK system potassium uptake protein TrkB, putative
1262	 26.64	0	1288670..1289356	-	228	157737533	kdpE	Abu_1290	-	two component system transcriptional regulatory protein
1263	 22.35	-1	1289353..1290381	-	342	157737534	kdpD	Abu_1291	-	two-component regulatory protein sensor kinase KdpD
1264	 26.65	0	1290565..1291491	-	308	157737535	dut	Abu_1292	-	deoxyuridinetriphosphatase
1265	 27.75	0	1291683..1292255	-	190	157737536	recR	Abu_1293	-	recombination protein RecR
1266	 31.10	+1	1292355..1293473	+	372	157737537	dnaJ	Abu_1294	-	co-chaperone and heat shock protein DnaJ
1267	 33.25	+1	1293505..1294722	+	405	157737538	trpB2	Abu_1295	-	tryptophan synthase subunit beta
1268	 21.66	-1	1294733..1295323	+	196	157737539	-	Abu_1296	-	hypothetical protein
1269	 23.18	-1	1295324..1295983	-	219	157737540	-	Abu_1297	-	hypothetical protein
1270	 27.23	0	1295984..1296802	-	272	157737541	-	Abu_1298	-	hypothetical protein
1271	 30.30	0	1296857..1297450	+	197	157737542	-	Abu_1299	-	beta-lactamase-like protein
1272	 22.92	-1	1297450..1298352	+	300	157737543	-	Abu_1300	-	GGDEF domain-containing protein
1273	 23.32	-1	1298360..1299328	+	322	157737544	-	Abu_1301	-	GGDEF domain-containing protein
1274	 27.87	0	1299331..1300245	-	304	157737545	-	Abu_1302	-	hypothetical protein
1275	 21.89	-1	1300314..1300811	+	165	157737546	-	Abu_1303	-	hypothetical protein
1276	 28.20	0	1300915..1303662	+	915	157737547	-	Abu_1304	-	cytochrome c biogenesis protein
1277	 25.95	0	1303701..1304987	+	428	157737548	pepD	Abu_1305	-	aminoacyl-histidine dipeptidase PepD
1278	 22.56	-1	1304989..1305285	-	98	157737549	-	Abu_1306	-	hypothetical protein
1279	 26.65	0	1305348..1307831	-	827	157737550	-	Abu_1307	-	methyl-accepting chemotaxis protein
1280	 36.86	+2	1308062..1308316	+	84	157737551	-	Abu_1308	-	hypothetical protein
1281	 24.11	0	1308303..1308833	-	176	157737552	lolA	Abu_1309	-	outer membrane lipoprotein carrier protein LolA
1282	 28.94	0	1308890..1311508	+	872	157737553	secA	Abu_1310	-	preprotein translocase subunit SecA
1283	 27.78	0	1311510..1312715	+	401	157737554	-	Abu_1311	-	hypothetical protein
1284	 21.99	-1	1312731..1315649	-	972	157737555	-	Abu_1312	-	hypothetical protein
1285	 26.47	0	1315570..1316691	+	373	157737556	-	Abu_1313	-	4-amino-4-deoxychorismate lyase PabC
1286	 32.42	+1	1316810..1319002	+	730	157737557	icd	Abu_1314	-	isocitrate dehydrogenase
1287	 26.14	0	1319102..1320046	+	314	157737558	mdh	Abu_1315	-	malate dehydrogenase
1288	 32.26	+1	1320146..1320424	+	92	157737559	-	Abu_1316	-	putative cytochrome c
1289	 19.51	-2	1320446..1320850	-	134	157737560	-	Abu_1317	-	hypothetical protein
1290	 24.80	0	1320937..1322214	+	425	157737561	-	Abu_1318	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.