IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1075	 23.12	-1	1101546..1101731	+	61	157737346	-	Abu_1100	-	hypothetical protein
1076	 24.58	0	1101751..1103670	+	639	157737347	-	Abu_1101	-	TonB-dependent receptor protein
1077	 22.62	-1	1103672..1104502	+	276	157737348	-	Abu_1102	-	putative iron compound ABC transporter, periplasmic substrate-binding protein
1078	 21.37	-1	1104480..1105181	+	233	157737349	-	Abu_1103	-	putative iron compound ABC transporter, ATP-binding protein
1079	 23.47	-1	1105178..1106140	+	320	157737350	-	Abu_1104	-	putative iron compound ABC transporter, permease protein
1080	 23.17	-1	1106134..1106625	-	163	157737351	-	Abu_1105	-	phosphohistidine phosphatase
1081	 23.39	-1	1106638..1108407	-	589	157737352	-	Abu_1106	-	ABC transporter, ATP-binding protein
1082	 29.32	0	1108503..1108751	+	82	157737353	-	Abu_1107	-	hypothetical protein
1083	 25.53	0	1108741..1109406	+	221	157737354	-	Abu_1108	-	two-component response regulator
1084	 22.22	-1	1109363..1110550	+	395	157737355	-	Abu_1109	-	two-component sensor histidine kinase
1085	 24.85	0	1110544..1110885	+	113	157737356	-	Abu_1110	-	hypothetical protein
1086	 31.81	+1	1110956..1111414	+	152	157737357	-	Abu_1111	-	hypothetical protein
1087	 27.08	0	1111442..1112257	-	271	157737358	-	Abu_1112	-	hypothetical protein
1088	 22.48	-1	1112315..1112830	+	171	157737359	-	Abu_1113	-	hypothetical protein
1089	 19.63	-2	1112840..1113715	-	291	157737360	-	Abu_1114	-	GGDEF domain-containing protein
1090	 22.86	-1	1113909..1114223	+	104	157737361	-	Abu_1115	-	hypothetical protein
1091	 28.41	0	1114230..1115285	-	351	157737362	-	Abu_1116	-	putative ATP-dependent RNA helicase RhlE
1092	 22.39	-1	1115668..1117047	+	459	157737363	-	Abu_1117	-	two-component sensor histidine kinase
1093	 21.01	-1	1117044..1117733	+	229	157737364	-	Abu_1118	-	two-component response regulator
1094	 27.33	0	1118036..1120600	+	854	157737365	-	Abu_1119	-	hypothetical protein
1095	 27.74	0	1120626..1122788	+	720	157737366	-	Abu_1120	-	ABC transporter, transmembrane region
1096	 26.87	0	1122781..1124250	+	489	157737367	-	Abu_1121	-	HlyD family secretion protein
1097	 21.55	-1	1124257..1124850	+	197	157737368	-	Abu_1122	-	two-component response regulator
1098	 25.67	0	1124920..1125519	+	199	157737369	-	Abu_1123	-	hypothetical protein
1099	 21.81	-1	1125516..1127390	+	624	157737370	-	Abu_1124	-	EAL/GGDEF/HAMP domain-containing protein
1100	 27.83	0	1127464..1128498	+	344	157737371	aroB	Abu_1125	-	3-dehydroquinate synthase
1101	 24.71	0	1128500..1130239	+	579	157737372	-	Abu_1126	-	hypothetical protein
1102	 28.13	0	1130243..1131511	+	422	157737373	-	Abu_1127	-	MiaB-like tRNA modifying enzyme
1103	 26.61	0	1131492..1132964	+	490	157737374	ftsH2	Abu_1128	-	cell division protein FtsH
1104	 24.47	0	1132951..1133469	+	172	157737375	-	Abu_1129	-	hypothetical protein
1105	 32.22	+1	1133466..1134002	+	178	157737376	mog	Abu_1130	-	molybdenum cofactor biosynthesis protein Mog
1106	 27.80	0	1134017..1134631	-	204	157737377	ribB	Abu_1131	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1107	 28.03	0	1134991..1135575	+	194	157737378	-	Abu_1132	-	hypothetical protein
1108	 21.52	-1	1135585..1136109	+	174	157737379	-	Abu_1133	-	hypothetical protein
1109	 29.58	0	1136127..1136366	+	79	157737380	-	Abu_1134	-	hypothetical protein
1110	 20.04	-1	1136363..1139695	+	1110	157737381	-	Abu_1135	-	hypothetical protein
1111	 25.85	0	1139700..1140113	+	137	157737382	-	Abu_1136	-	hypothetical protein
1112	 28.86	0	1140127..1140372	-	81	157737383	-	Abu_1137	-	hypothetical protein
1113	 16.05	-2	1140468..1140710	+	80	157737384	-	Abu_1138	-	hypothetical protein
1114	 23.33	-1	1140762..1141241	+	159	157737385	-	Abu_1139	-	hypothetical protein
1115	 23.99	0	1141351..1142838	+	495	157737386	-	Abu_1140	-	ABC transporter, ATP-binding protein
1116	 25.28	0	1142902..1143348	+	148	157737387	-	Abu_1141	-	hypothetical protein
1117	 26.60	0	1143508..1144101	+	197	157737388	torC	Abu_1142	-	cytochrome c-type protein TorC
1118	 31.00	+1	1144098..1146581	+	827	157737389	bisC	Abu_1143	-	biotin sulfoxide reductase
1119	 25.79	0	1146607..1147428	-	273	157737390	-	Abu_1144	-	alpha/beta hydrolase fold protein
1120	 24.24	0	1147505..1148098	+	197	157737391	-	Abu_1145	-	TetR family transcriptional regulator
1121	 26.98	0	1148145..1150346	+	733	157737392	mutS2	Abu_1146	-	recombination and DNA strand exchange inhibitor protein
1122	 28.77	0	1150336..1151673	-	445	157737393	-	Abu_1147	-	putative efflux protein
1123	 20.18	-1	1151764..1152318	-	184	157737394	-	Abu_1148	-	hypothetical protein
1124	 22.21	-1	1152405..1155164	-	919	157737395	-	Abu_1149	-	hypothetical protein
1125	 29.70	0	1155252..1156352	+	366	157737396	dapE	Abu_1150	-	succinyl-diaminopimelate desuccinylase
1126	 34.77	+2	1156461..1157780	+	439	157737397	amtB	Abu_1151	-	ammonium transporter
1127	 30.09	0	1157800..1158138	+	112	157737398	glnB2	Abu_1152	-	nitrogen regulatory protein PII
1128	 26.34	0	1158301..1158858	+	185	157737399	pssA	Abu_1153	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1129	 26.49	0	1158866..1159786	+	306	157737400	-	Abu_1154	-	Ppx/GppA phosphatase family protein
1130	 23.19	-1	1159783..1160571	-	262	157737401	-	Abu_1155	-	hypothetical protein
1131	 32.74	+1	1160732..1162429	+	565	157737402	ilvI	Abu_1156	-	acetolactate synthase 3 catalytic subunit
1132	 28.51	0	1162429..1162926	+	165	157737403	ilvH	Abu_1157	-	acetolactate synthase 3 regulatory subunit
1133	 29.64	0	1162945..1163892	+	315	157737404	lpxD	Abu_1158	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1134	 28.09	0	1164050..1166110	+	686	157737405	-	Abu_1159	-	cell division protein FtsK
1135	 25.91	0	1166175..1166861	+	228	157737406	-	Abu_1160	-	two-component response regulator
1136	 22.47	-1	1166977..1168173	+	398	157737407	-	Abu_1161	-	two-component sensor histidine kinase
1137	 30.80	+1	1168235..1169101	+	288	157737408	-	Abu_1162	-	hypothetical protein
1138	 21.97	-1	1169171..1171018	+	615	157737409	-	Abu_1163	-	two-component sensor histidine kinase
1139	 22.75	-1	1171011..1171700	+	229	157737410	-	Abu_1164	-	two-component response regulator
1140	 23.49	0	1171772..1172533	+	253	157737411	-	Abu_1165	-	hypothetical protein
1141	 23.87	0	1172599..1173264	+	221	157737412	-	Abu_1166	-	two-component response regulator
1142	 23.67	0	1173293..1173913	+	206	157737413	-	Abu_1167	-	hypothetical protein
1143	 26.35	0	1174011..1174712	+	233	157737414	-	Abu_1168	-	hypothetical protein
1144	 26.80	0	1174743..1175354	+	203	157737415	-	Abu_1169	-	hypothetical protein
1145	 24.20	0	1175437..1175874	-	145	157737416	-	Abu_1170	-	hypothetical protein
1146	 26.46	0	1176074..1176364	+	96	157737417	-	Abu_1171	-	hypothetical protein
1147	 22.90	-1	1176351..1179053	+	900	157737418	-	Abu_1172	-	putative DNA helicase
1148	 22.22	-1	1179144..1179242	+	32	157737419	-	Abu_1173	-	hypothetical protein
1149	 26.52	0	1179437..1179979	+	180	157737420	-	Abu_1174	-	hypothetical protein
1150	 29.29	0	1180064..1181521	+	485	157737421	engA	Abu_1175	-	GTP-binding protein EngA
1151	 26.16	0	1181548..1183122	+	524	157737422	-	Abu_1176	-	sulfate permease family protein
1152	 23.81	0	1183119..1183748	+	209	157737423	hemD	Abu_1177	-	putative uroporphyrinogen III cosynthase HemD
1153	 36.62	+2	1183807..1184019	+	70	157737424	-	Abu_1178	-	hypothetical protein
1154	 31.35	+1	1183988..1185250	+	420	157737425	purD	Abu_1179	-	phosphoribosylamine--glycine ligase
1155	 29.68	0	1185257..1185694	+	145	157737426	-	Abu_1180	-	hypothetical protein
1156	 25.80	0	1185687..1187864	+	725	157737427	-	Abu_1181	-	hypothetical protein
1157	 26.15	0	1187864..1188517	+	217	157737428	-	Abu_1182	-	hypothetical protein
1158	 28.83	0	1188524..1190701	+	725	157737429	pnp	Abu_1183	-	polynucleotide phosphorylase/polyadenylase
1159	 31.98	+1	1190831..1191199	+	122	157737430	cheY1	Abu_1184	-	chemotaxis protein CheY
1160	 28.96	0	1191212..1193269	+	685	157737431	cheA	Abu_1185	-	chemotaxis protein CheA
1161	 26.22	0	1193275..1194117	+	280	157737432	cheR	Abu_1186	-	chemotaxis protein methyltransferase
1162	 28.99	0	1194114..1194803	+	229	157737433	cheD	Abu_1187	-	chemotaxis protein CheD
1163	 32.13	+1	1194836..1195915	+	359	157737434	cheB	Abu_1188	-	protein-glutamate methylesterase CheB
1164	 25.08	0	1195916..1196509	+	197	157737435	-	Abu_1189	-	hypothetical protein
1165	 27.88	0	1196519..1197673	+	384	157737436	fsr	Abu_1190	-	fosmidomycin resistance protein
1166	 26.69	0	1197782..1198834	+	350	157737437	xerD	Abu_1191	-	integrase/recombinase XerD
1167	 23.48	-1	1198836..1199180	+	114	157737438	-	Abu_1192	-	hypothetical protein
1168	 26.16	0	1199186..1199464	-	92	157737439	-	Abu_1193	-	hypothetical protein
1169	 25.79	0	1199483..1199959	-	158	157737440	-	Abu_1194	-	hypothetical protein
1170	 26.69	0	1200012..1201982	-	656	157737441	prlC	Abu_1195	-	oligopeptidase A
1171	 23.74	0	1201985..1202818	-	277	157737442	hemK	Abu_1196	-	modification methylase
1172	 24.49	0	1202861..1203934	-	357	157737443	hemN1	Abu_1197	-	coproporphyrinogen III oxidase
1173	 29.12	0	1203990..1204487	+	165	157737444	nudH	Abu_1198	-	dinucleoside polyphosphate hydrolase
1174	 31.44	+1	1204505..1205716	+	403	157737445	lysC	Abu_1199	-	aspartokinase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.