IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1000	 21.69	-1	1026129..1026626	-	165	157737271	-	Abu_1025	-	hypothetical protein
1001	 23.11	-1	1026680..1028254	-	524	157737272	-	Abu_1026	-	two-component sensor histidine kinase
1002	 21.19	-1	1028265..1028939	-	224	157737273	-	Abu_1027	-	two-component response regulator
1003	 26.50	0	1029118..1030917	+	599	157737274	-	Abu_1028	-	outer membrane efflux protein, putative
1004	 27.73	0	1030927..1031640	+	237	157737275	-	Abu_1029	-	hypothetical protein
1005	 29.73	0	1031657..1039210	+	2517	157737276	-	Abu_1030	-	hypothetical protein
1006	 25.98	0	1039230..1040576	+	448	157737277	-	Abu_1031	-	hypothetical protein
1007	 24.09	0	1040576..1042696	+	706	157737278	-	Abu_1032	-	M50 family peptidase
1008	 21.33	-1	1042726..1043208	-	160	157737279	-	Abu_1033	-	DnaJ domain-containing protein
1009	 23.97	0	1043296..1043562	+	88	157737280	-	Abu_1034	-	DnaJ domain-containing protein
1010	 25.48	0	1043575..1044669	+	364	157737281	-	Abu_1035	-	glycosyl hydrolase
1011	 21.44	-1	1044673..1046580	-	635	157737282	-	Abu_1036	-	two-component sensor histidine kinase
1012	 19.05	-2	1046583..1047254	-	223	157737283	-	Abu_1037	-	two-component response regulator
1013	 24.37	0	1047373..1047885	-	170	157737284	-	Abu_1038	-	hypothetical protein
1014	 26.11	0	1048005..1048793	-	262	157737285	-	Abu_1039	-	ABC transporter, ATP-binding protein
1015	 27.50	0	1048932..1049411	+	159	157737286	-	Abu_1040	-	ECF subfamily RNA polymerase sigma factor
1016	 23.43	-1	1049408..1050346	+	312	157737287	-	Abu_1041	-	sigma factor regulatory protein FecR/PupR family
1017	 35.32	+2	1050422..1051477	+	351	157737288	-	Abu_1042	-	NADP-dependent alcohol dehydrogenase
1018	 24.80	0	1051503..1052123	+	206	157737289	-	Abu_1043	-	hypothetical protein
1019	 26.43	0	1052120..1052713	-	197	157737290	-	Abu_1044	-	cyclic nucleotide-binding protein
1020	 23.70	0	1052826..1053707	+	293	157737291	-	Abu_1045	-	hypothetical protein
1021	 29.78	0	1053711..1054076	-	121	157737292	-	Abu_1046	-	hypothetical protein
1022	 25.37	0	1054174..1054713	+	179	157737293	-	Abu_1047	-	hypothetical protein
1023	 23.97	0	1054736..1056091	-	451	157737294	-	Abu_1048	-	putative sodium:sulfate symporter
1024	 30.19	0	1056125..1056442	-	105	157737295	sugE	Abu_1049	-	suppresses groEL, may be chaperone
1025	 23.81	0	1056578..1057459	+	293	157737296	-	Abu_1050	-	transporter
1026	 19.21	-2	1057474..1058280	+	268	157737297	-	Abu_1051	-	AraC family transcriptional regulator
1027	 31.81	+1	1058345..1058869	+	174	157737298	-	Abu_1052	-	hypothetical protein
1028	 23.33	-1	1058872..1059741	-	289	157737299	-	Abu_1053	-	LysR family transcriptional regulator
1029	 25.22	0	1059841..1060863	+	340	157737300	-	Abu_1054	-	putative integral membrane protein
1030	 23.62	0	1060882..1061622	-	246	157737301	-	Abu_1055	-	periplasmic protein
1031	 28.02	0	1061709..1062611	-	300	157737302	-	Abu_1056	-	auxin efflux carrier protein
1032	 28.23	0	1062615..1062986	-	123	157737303	-	Abu_1057	-	hypothetical protein
1033	 27.15	0	1063121..1063702	+	193	157737304	-	Abu_1058	-	flavodoxin-like fold domain-containing protein
1034	 22.56	-1	1063712..1064008	+	98	157737305	-	Abu_1059	-	hypothetical protein
1035	 27.78	0	1064021..1065046	+	341	157737306	-	Abu_1060	-	NADH:flavin oxidoreductase/NADH oxidase
1036	 26.98	0	1065064..1065960	+	298	157737307	-	Abu_1061	-	hypothetical protein
1037	 28.93	0	1065988..1066623	+	211	157737308	-	Abu_1062	-	NAD(P)H-flavin nitroreductase
1038	 27.38	0	1066736..1068229	+	497	157737309	-	Abu_1063	-	hypothetical protein
1039	 29.08	0	1068311..1069909	+	532	157737310	-	Abu_1064	-	ABC transporter, ATP-binding protein
1040	 30.82	+1	1069964..1070440	-	158	157737311	-	Abu_1065	-	acyl-CoA thioester hydrolase family protein
1041	 27.88	0	1070530..1072491	-	653	157737312	-	Abu_1066	-	methyl-accepting chemotaxis protein
1042	 28.25	0	1072587..1074533	-	648	157737313	lig	Abu_1067	-	NAD-dependent DNA ligase LigA
1043	 27.65	0	1074549..1075727	-	392	157737314	-	Abu_1068	-	glutathionylspermidine synthase family protein
1044	 32.09	+1	1075731..1076372	-	213	157737315	-	Abu_1069	-	hypothetical protein
1045	 25.73	0	1076506..1077951	+	481	157737316	dgt	Abu_1070	-	deoxyguanosinetriphosphate triphosphohydrolase
1046	 25.81	0	1078224..1079300	+	358	157737317	mloA	Abu_1071	-	hypothetical protein
1047	 22.64	-1	1079392..1080663	+	423	157737318	-	Abu_1072	-	hypothetical protein
1048	 29.18	0	1081122..1081916	-	264	157737319	aroE	Abu_1073	-	shikimate 5-dehydrogenase
1049	 24.67	0	1081919..1082530	-	203	157737320	-	Abu_1074	-	methyltransferase, putative
1050	 24.96	0	1082591..1083259	+	222	157737321	-	Abu_1075	-	hypothetical protein
1051	 30.71	+1	1083354..1084613	+	419	157737322	maeA	Abu_1076	-	NAD-dependent malic enzyme
1052	 27.22	0	1084681..1085514	+	277	157737323	purU	Abu_1077	-	formyltetrahydrofolate deformylase
1053	 27.96	0	1085516..1085980	+	154	157737324	-	Abu_1078	-	RNA methylase
1054	 18.86	-2	1085973..1086200	-	75	157737325	-	Abu_1079	-	hypothetical protein
1055	 26.19	0	1086187..1087950	-	587	157737326	-	Abu_1080	-	sodium:phosphate cotransporter
1056	 23.62	0	1088081..1088461	+	126	157737327	-	Abu_1081	-	hypothetical protein
1057	 23.98	0	1088464..1088805	+	113	157737328	-	Abu_1082	-	hypothetical protein
1058	 23.38	-1	1088806..1089468	+	220	157737329	-	Abu_1083	-	two-component response regulator
1059	 19.42	-2	1089458..1090312	+	284	157737330	-	Abu_1084	-	two-component sensor histidine kinase
1060	 30.97	+1	1090356..1091285	+	309	157737331	-	Abu_1085	-	putative protease
1061	 27.66	0	1091263..1091703	+	146	157737332	-	Abu_1086	-	hypothetical protein
1062	 25.46	0	1091734..1092114	-	126	157737333	-	Abu_1087	-	hypothetical protein
1063	 25.91	0	1092225..1093355	-	376	157737334	cydB	Abu_1088	-	cytochrome bd oxidase, subunit II
1064	 30.52	+1	1093357..1094883	-	508	157737335	cydA	Abu_1089	-	cytochrome bd oxidase, subunit I
1065	 15.94	-2	1094899..1095105	-	68	157737336	-	Abu_1090	-	hypothetical protein
1066	 28.90	0	1095264..1095692	-	142	157737337	-	Abu_1091	-	hypothetical protein
1067	 25.67	0	1095715..1096875	-	386	157737338	-	Abu_1092	-	hypothetical protein
1068	 29.47	0	1096978..1097520	-	180	157737339	-	Abu_1093	-	TPR repeat-containing SEL1 subfamily protein
1069	 16.22	-2	1097735..1097956	+	73	157737340	-	Abu_1094	-	hypothetical protein
1070	 26.01	0	1097953..1098621	-	222	157737341	aat	Abu_1095	-	leucyl/phenylalanyl-tRNA--protein transferase
1071	 27.22	0	1098680..1099366	+	228	157737342	rsuA	Abu_1096	-	ribosomal small subunit pseudouridine synthase A
1072	 26.00	0	1099363..1099989	-	208	157737343	-	Abu_1097	-	HAD-superfamily hydrolase
1073	 28.37	0	1100305..1100808	+	167	157737344	-	Abu_1098	-	hypothetical protein
1074	 27.43	0	1100808..1101518	+	236	157737345	-	Abu_1099	-	hypothetical protein
1075	 23.12	-1	1101546..1101731	+	61	157737346	-	Abu_1100	-	hypothetical protein
1076	 24.58	0	1101751..1103670	+	639	157737347	-	Abu_1101	-	TonB-dependent receptor protein
1077	 22.62	-1	1103672..1104502	+	276	157737348	-	Abu_1102	-	putative iron compound ABC transporter, periplasmic substrate-binding protein
1078	 21.37	-1	1104480..1105181	+	233	157737349	-	Abu_1103	-	putative iron compound ABC transporter, ATP-binding protein
1079	 23.47	-1	1105178..1106140	+	320	157737350	-	Abu_1104	-	putative iron compound ABC transporter, permease protein
1080	 23.17	-1	1106134..1106625	-	163	157737351	-	Abu_1105	-	phosphohistidine phosphatase
1081	 23.39	-1	1106638..1108407	-	589	157737352	-	Abu_1106	-	ABC transporter, ATP-binding protein
1082	 29.32	0	1108503..1108751	+	82	157737353	-	Abu_1107	-	hypothetical protein
1083	 25.53	0	1108741..1109406	+	221	157737354	-	Abu_1108	-	two-component response regulator
1084	 22.22	-1	1109363..1110550	+	395	157737355	-	Abu_1109	-	two-component sensor histidine kinase
1085	 24.85	0	1110544..1110885	+	113	157737356	-	Abu_1110	-	hypothetical protein
1086	 31.81	+1	1110956..1111414	+	152	157737357	-	Abu_1111	-	hypothetical protein
1087	 27.08	0	1111442..1112257	-	271	157737358	-	Abu_1112	-	hypothetical protein
1088	 22.48	-1	1112315..1112830	+	171	157737359	-	Abu_1113	-	hypothetical protein
1089	 19.63	-2	1112840..1113715	-	291	157737360	-	Abu_1114	-	GGDEF domain-containing protein
1090	 22.86	-1	1113909..1114223	+	104	157737361	-	Abu_1115	-	hypothetical protein
1091	 28.41	0	1114230..1115285	-	351	157737362	-	Abu_1116	-	putative ATP-dependent RNA helicase RhlE
1092	 22.39	-1	1115668..1117047	+	459	157737363	-	Abu_1117	-	two-component sensor histidine kinase
1093	 21.01	-1	1117044..1117733	+	229	157737364	-	Abu_1118	-	two-component response regulator
1094	 27.33	0	1118036..1120600	+	854	157737365	-	Abu_1119	-	hypothetical protein
1095	 27.74	0	1120626..1122788	+	720	157737366	-	Abu_1120	-	ABC transporter, transmembrane region
1096	 26.87	0	1122781..1124250	+	489	157737367	-	Abu_1121	-	HlyD family secretion protein
1097	 21.55	-1	1124257..1124850	+	197	157737368	-	Abu_1122	-	two-component response regulator
1098	 25.67	0	1124920..1125519	+	199	157737369	-	Abu_1123	-	hypothetical protein
1099	 21.81	-1	1125516..1127390	+	624	157737370	-	Abu_1124	-	EAL/GGDEF/HAMP domain-containing protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.