IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
951	 59.15	-1	1051728..1053044	+	438	119963867	-	AAur_0994	-	putative FemAB family protein
952	 63.04	0	1053072..1054559	+	495	119964452	-	AAur_0995	-	hypothetical protein
953	 64.17	0	1054619..1055458	-	279	119962939	-	AAur_0996	-	putative iron-chelator utilization protein
954	 65.19	+1	1055528..1056202	-	224	119961149	ung	AAur_0997	-	uracil-DNA glycosylase
955	 62.18	0	1056429..1056740	+	103	119962707	-	AAur_0998	-	hypothetical protein
956	 64.90	0	1056790..1057410	+	206	119963256	-	AAur_0999	-	hypothetical protein
957	 57.84	-1	1057583..1057786	+	67	119961765	-	AAur_1000	-	putative cold shock protein
958	 62.18	0	1058110..1059735	+	541	119960876	groEL	AAur_1001	-	chaperonin GroEL
959	 62.94	0	1059960..1061087	+	375	119960568	-	AAur_1002	-	putative RNase H
960	 55.33	-2	1061201..1061491	-	96	119962059	-	AAur_1003	-	hypothetical protein
961	 62.64	0	1063081..1063800	-	239	119963548	-	AAur_1005	-	response regulator of two-component system
962	 64.31	0	1063880..1064515	-	211	119961197	-	AAur_1006	-	LysE family translocator protein
963	 66.67	+1	1064584..1065525	+	313	119962663	-	AAur_1007	-	chromosome replication initiation inhibitor protein
964	 60.36	0	1065586..1065807	+	73	119963843	-	AAur_1008	-	hypothetical protein
965	 65.93	+1	1065829..1067988	-	719	119961029	-	AAur_1009	-	putative multicopper oxidase family protein
966	 60.76	0	1068034..1068507	-	157	119963937	-	AAur_1010	-	hypothetical protein
967	 63.29	0	1068719..1070377	-	552	119961251	-	AAur_1011	-	putative ATP-dependent DNA helicase
968	 65.94	+1	1070421..1072886	-	821	119962941	-	AAur_1012	-	hypothetical protein
969	 61.98	0	1073382..1073765	+	127	119963261	-	AAur_1013	-	putative cold shock protein
970	 66.16	+1	1073774..1074361	+	195	119961864	-	AAur_1014	-	hypothetical protein
971	 65.06	0	1074405..1075712	+	435	119962255	-	AAur_1015	-	putative transmembrane efflux protein (MFS)
972	 65.16	+1	1075779..1076909	-	376	119961064	-	AAur_1016	-	phosphoserine aminotransferase
973	 62.93	0	1077203..1077898	+	231	119961741	-	AAur_1017	-	putative iron-dependent repressor
974	 68.46	+2	1078326..1079162	+	278	119962355	-	AAur_1018	-	M23 peptidase domain-containing protein
975	 66.29	+1	1079808..1080596	+	262	119961735	-	AAur_1019	-	hypothetical protein
976	 59.68	-1	1080813..1081313	+	166	119960536	-	AAur_1020	-	HNH endonuclease domain-containing protein
977	 64.76	0	1081356..1082300	+	314	119963939	-	AAur_1021	-	putative molybdopterin-guanine dinucleotide biosynthesis protein (mobA)
978	 65.93	+1	1082297..1083655	+	452	119961425	-	AAur_1022	-	putative molybdopterin biosynthesis protein (MoeA)
979	 60.92	0	1083683..1086013	+	776	119964214	-	AAur_1023	-	putative formate dehydrogenase
980	 64.87	0	1086015..1086905	+	296	119963927	fdhD	AAur_1024	-	formate dehydrogenase family accessory protein FdhD
981	 63.30	0	1087053..1090082	+	1009	119961757	-	AAur_1025	-	putative alpha-mannosidase
982	 56.75	-2	1090115..1091122	-	335	119964474	-	AAur_1026	-	hypothetical protein
983	 59.09	-1	1091125..1092021	-	298	119961001	-	AAur_1027	-	hypothetical protein
984	 62.58	0	1092068..1092874	-	268	119963324	-	AAur_1028	-	putative amino acid ABC transporter, ATP-binding protein
985	 61.67	0	1092861..1093520	-	219	119964017	-	AAur_1029	-	putative amino acid ABC transporter, permease protein
986	 61.40	0	1093521..1094336	-	271	119961444	-	AAur_1030	-	putative amino acid ABC transporter
987	 59.60	-1	1094567..1095274	-	235	119963273	-	AAur_1031	-	putative integral membrane protein
988	 65.15	+1	1095271..1095993	-	240	119962658	-	AAur_1032	-	hypothetical protein
989	 65.04	0	1096205..1097866	+	553	119960930	-	AAur_1033	-	putative ABC transporter, ATP-binding protein
990	 64.84	0	1097869..1099782	+	637	119961230	-	AAur_1034	-	putative ABC transporter, ATP-binding protein
991	 64.73	0	1099790..1100203	-	137	119963570	-	AAur_1035	-	MutT/nudix family protein
992	 61.22	0	1100200..1100658	-	152	119964461	-	AAur_1036	-	hypothetical protein
993	 64.91	0	1100841..1101638	+	265	119962674	-	AAur_1038	-	hypothetical protein
994	 62.52	0	1101798..1102376	-	192	119963063	-	AAur_1039	-	hypothetical protein
995	 66.43	+1	1102458..1103303	+	281	119963580	-	AAur_1040	-	extragenic suppressor protein
996	 63.96	0	1103383..1105929	+	848	119964268	pcrA	AAur_1041	-	ATP-dependent DNA helicase PcrA
997	 61.37	0	1105926..1106642	+	238	119961330	-	AAur_1042	-	putative lipoprotein
998	 55.21	-2	1106805..1106900	-	31	119962959	-	AAur_1043	-	hypothetical protein
999	 62.31	0	1106907..1108076	+	389	119964224	sucC	AAur_1044	-	succinyl-CoA synthetase subunit beta
1000	 62.13	0	1108089..1108991	+	300	119962638	sucD	AAur_1045	-	succinyl-CoA synthetase subunit alpha
1001	 61.73	0	1109129..1112047	-	972	119963150	-	AAur_1046	-	FG-GAP repeat-containing protein
1002	 64.02	0	1112169..1112960	-	263	119961865	-	AAur_1047	-	putative glutamine amidotransferases
1003	 65.80	+1	1113118..1114155	+	345	119961375	-	AAur_1048	-	hypothetical protein
1004	 65.28	+1	1114174..1115109	-	311	119963614	-	AAur_1049	-	hypothetical protein
1005	 65.95	+1	1115229..1116065	-	278	119962085	-	AAur_1050	-	hypothetical protein
1006	 67.53	+1	1116208..1117365	-	385	119962172	-	AAur_1051	-	putative integral membrane protein
1007	 60.93	0	1117360..1117812	+	150	119962832	-	AAur_1053	-	hypothetical protein
1008	 63.33	0	1117809..1118138	-	109	119963530	-	AAur_1052	-	hypothetical protein
1009	 63.04	0	1118781..1120298	-	505	119963954	-	AAur_1054	-	putative sodium:solute symporter family protein
1010	 62.85	0	1120565..1121140	+	191	119962079	-	AAur_1055	-	helix-turn-helix domain-containing protein
1011	 61.84	0	1121169..1122038	-	289	119962275	-	AAur_1056	-	hypothetical protein
1012	 62.87	0	1122294..1124267	-	657	119963352	-	AAur_1057	-	regulatory protein
1013	 66.11	+1	1124489..1125559	+	356	119961107	-	AAur_1058	-	putative agmatinase (speB)
1014	 65.20	+1	1125556..1127259	+	567	119961675	-	AAur_1059	-	putative acetolactate synthase, large subunit
1015	 62.73	0	1127483..1127965	+	160	119962263	-	AAur_1060	-	MarR family transcriptional regulator
1016	 64.13	0	1127976..1130024	+	682	119963010	-	AAur_1061	-	EmrB/QacA family drug resistance transporter
1017	 61.25	0	1130327..1132060	+	577	119964354	-	AAur_1062	-	putative ABC transporter, ATP-binding protein
1018	 60.62	0	1132216..1134135	+	639	119961420	-	AAur_1063	-	putative ABC transporter, ATP-binding protein
1019	 59.95	0	1134192..1134608	+	138	119961552	-	AAur_1064	-	hypothetical protein
1020	 62.75	0	1134634..1135398	+	254	119963203	-	AAur_1065	-	putative copper homeostasis protein CutC
1021	 63.89	0	1135615..1138713	+	1032	119962752	-	AAur_1066	-	hypothetical protein
1022	 65.50	+1	1138766..1140652	+	628	119964478	-	AAur_1067	-	TPR repeat-containing protein
1023	 64.34	0	1140743..1141345	+	200	119961060	-	AAur_1068	-	hypothetical protein
1024	 62.49	0	1141498..1143654	+	718	119962222	-	AAur_1069	-	hypothetical protein
1025	 65.10	0	1143641..1144978	+	445	119962877	-	AAur_1070	-	hypothetical protein
1026	 60.71	0	1145012..1145263	+	83	119962328	-	AAur_1071	-	putative integral membrane protein
1027	 61.25	0	1145267..1146892	-	541	119963101	-	AAur_1072	-	signal transduction histidine kinase domain-containing protein
1028	 59.81	0	1147037..1147780	+	247	119964131	-	AAur_1074	-	two-component system response regulator
1029	 61.99	0	1147777..1148097	-	106	119960623	-	AAur_1073	-	ferredoxin
1030	 65.50	+1	1148104..1149564	-	486	119961284	-	AAur_1075	-	aldehyde dehydrogenase (NAD) family protein
1031	 66.30	+1	1149606..1150418	-	270	119963281	-	AAur_1076	-	short chain dehydrogenase/reductase family oxidoreductase
1032	 64.76	0	1150418..1151362	-	314	119962692	-	AAur_1077	-	dihydrodipicolinate synthetase
1033	 65.18	+1	1151410..1152216	-	268	119961775	-	AAur_1078	-	putative enoyl-CoA hydratase/isomerase family protein
1034	 63.33	0	1152213..1153472	-	419	119962501	-	AAur_1079	-	CAIB/BAIF family acyl-CoA thioesterase
1035	 65.94	+1	1153469..1154851	-	460	119964182	-	AAur_1080	-	FAD dependent oxidoreductase domain-containing protein
1036	 61.94	0	1154861..1156192	-	443	119964366	kgtP	AAur_1081	-	alpha-ketoglutarate permease
1037	 58.71	-1	1156357..1156884	-	175	119962787	-	AAur_1082	-	helix-turn-helix domain-containing protein
1038	 60.10	0	1157047..1157427	-	126	119963482	-	AAur_1083	-	hypothetical protein
1039	 63.79	0	1157618..1157791	+	57	119962036	-	AAur_1085	-	hypothetical protein
1040	 60.56	0	1157788..1158180	-	130	119962031	-	AAur_1084	-	putative DNA mismatch endonuclease (vsr)
1041	 64.92	0	1158238..1159383	-	381	119962488	-	AAur_1086	-	putative cytochrome P450
1042	 67.11	+1	1159392..1160075	-	227	119963407	bioD	AAur_1087	-	dethiobiotin synthase
1043	 66.32	+1	1160072..1161229	-	385	119964318	bioF	AAur_1088	-	8-amino-7-oxononanoate synthase
1044	 66.59	+1	1161238..1162563	-	441	119963601	bioA	AAur_1089	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1045	 67.69	+1	1162578..1162772	+	64	119961405	-	AAur_1090	-	hypothetical protein
1046	 64.04	0	1162784..1163851	-	355	119964050	bioB	AAur_1091	-	biotin synthase
1047	 61.52	0	1164014..1165741	+	575	119963649	-	AAur_1092	-	hypothetical protein
1048	 60.75	0	1165847..1166032	-	61	119962550	-	AAur_1093	-	putative CsbD-like family protein
1049	 60.93	0	1166201..1167124	+	307	119960533	-	AAur_1094	-	short chain dehydrogenase/reductase family oxidoreductase
1050	 62.16	0	1167149..1168324	-	391	119963903	-	AAur_1095	-	putative glutathione-dependent formaldehyde dehydrogenase
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.