IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
913	 60.93	0	1014088..1014819	-	243	119963137	-	AAur_0956	-	hypothetical protein
914	 49.73	-2	1014900..1015271	-	123	119962592	-	AAur_0957	-	hypothetical protein
915	 53.75	-2	1016016..1016348	+	110	119964152	-	AAur_0958	-	hypothetical protein
916	 61.28	0	1016562..1017248	+	228	119962580	-	AAur_0959	-	hypothetical protein
917	 61.87	0	1017480..1017938	-	152	119964470	-	AAur_0960	-	MarR family transcriptional regulator
918	 65.19	+1	1018078..1019028	+	316	119963659	-	AAur_0961	-	short chain dehydrogenase/reductase family oxidoreductase
919	 63.52	0	1019031..1019921	+	296	119960700	-	AAur_0962	-	amidohydrolase family protein
920	 62.67	0	1019923..1021149	+	408	119961259	-	AAur_0963	-	putative glutaryl-CoA dehydrogenase
921	 62.06	0	1021187..1021642	+	151	119960732	-	AAur_0964	-	MaoC-like domain-containing protein
922	 62.37	0	1021701..1023026	+	441	119961062	-	AAur_0965	-	major facilitator transporter
923	 61.70	0	1023039..1024589	+	516	119963319	menE	AAur_0966	-	O-succinylbenzoate-CoA ligase
924	 62.60	0	1024897..1025388	+	163	119964464	-	AAur_0967	-	putative protein of unknown function (DUF805)
925	 62.32	0	1025517..1026734	+	405	119961037	-	AAur_0968	-	hypothetical protein
926	 59.13	-1	1026735..1027490	-	251	119963581	-	AAur_0969	-	putative CAAX amino terminal protease family protein
927	 62.50	0	1027587..1027802	+	71	119962127	-	AAur_0970	-	hypothetical protein
928	 56.85	-2	1027895..1028230	+	111	119960663	-	AAur_0971	-	hypothetical protein
929	 64.47	0	1028447..1028992	+	181	119960600	-	AAur_0972	-	hypothetical protein
930	 62.12	0	1029104..1030642	-	512	119964253	-	AAur_0973	-	putative amino acid permease
931	 63.84	0	1030655..1031680	-	341	119960966	-	AAur_0974	-	putative peptidylarginine deiminase
932	 65.43	+1	1032040..1033578	+	512	119963249	-	AAur_0975	-	HNH endonuclease domain-containing protein
933	 64.17	0	1033592..1034392	-	266	119961548	map	AAur_0976	-	methionine aminopeptidase, type I
934	 64.03	0	1034439..1034741	+	100	119962844	-	AAur_0977	-	helix-turn-helix domain-containing protein
935	 61.37	0	1034744..1035385	-	213	119962680	-	AAur_0978	-	helix-turn-helix domain-containing protein
936	 63.29	0	1035428..1036435	+	335	119963472	-	AAur_0979	-	pyridine nucleotide-disulphide oxidoreductase domain-containing protein
937	 60.67	0	1036463..1036996	+	177	119960675	-	AAur_0980	-	hypothetical protein
938	 61.68	0	1037108..1038331	-	407	119962090	-	AAur_0981	-	putative metal-dependent amidase/aminoacylase/carboxypeptidase
939	 61.82	0	1038422..1039081	+	219	119960724	-	AAur_0982	-	hypothetical protein
940	 57.96	-1	1039331..1039870	+	179	119963820	-	AAur_0983	-	hypothetical protein
941	 62.40	0	1039978..1040469	+	163	119964327	-	AAur_0984	-	hypothetical protein
942	 64.47	0	1040533..1042083	-	516	119964429	-	AAur_0985	-	putative drug resistance transporter
943	 60.59	0	1042120..1042695	+	191	119962822	-	AAur_0986	-	TetR family transcriptional regulator
944	 64.66	0	1043065..1045911	+	948	119961579	gcvP	AAur_0987	-	glycine dehydrogenase
945	 64.81	0	1045926..1047059	+	377	119961253	gcvT	AAur_0988	-	glycine cleavage system aminomethyltransferase T
946	 60.72	0	1047185..1047571	+	128	119964271	gcvH	AAur_0989	-	glycine cleavage system H protein
947	 62.00	0	1047877..1049289	+	470	119962302	sdaA	AAur_0990	-	L-serine ammonia-lyase
948	 62.70	0	1049332..1049583	+	83	119963392	-	AAur_0991	-	hypothetical protein
949	 58.74	-1	1049626..1050420	+	264	119962219	-	AAur_0992	-	putative DNA/RNA non-specific endonuclease family protein
950	 59.50	-1	1050528..1051616	+	362	119961052	-	AAur_0993	-	putative FemAB family protein
951	 59.15	-1	1051728..1053044	+	438	119963867	-	AAur_0994	-	putative FemAB family protein
952	 63.04	0	1053072..1054559	+	495	119964452	-	AAur_0995	-	hypothetical protein
953	 64.17	0	1054619..1055458	-	279	119962939	-	AAur_0996	-	putative iron-chelator utilization protein
954	 65.19	+1	1055528..1056202	-	224	119961149	ung	AAur_0997	-	uracil-DNA glycosylase
955	 62.18	0	1056429..1056740	+	103	119962707	-	AAur_0998	-	hypothetical protein
956	 64.90	0	1056790..1057410	+	206	119963256	-	AAur_0999	-	hypothetical protein
957	 57.84	-1	1057583..1057786	+	67	119961765	-	AAur_1000	-	putative cold shock protein
958	 62.18	0	1058110..1059735	+	541	119960876	groEL	AAur_1001	-	chaperonin GroEL
959	 62.94	0	1059960..1061087	+	375	119960568	-	AAur_1002	-	putative RNase H
960	 55.33	-2	1061201..1061491	-	96	119962059	-	AAur_1003	-	hypothetical protein
961	 62.64	0	1063081..1063800	-	239	119963548	-	AAur_1005	-	response regulator of two-component system
962	 64.31	0	1063880..1064515	-	211	119961197	-	AAur_1006	-	LysE family translocator protein
963	 66.67	+1	1064584..1065525	+	313	119962663	-	AAur_1007	-	chromosome replication initiation inhibitor protein
964	 60.36	0	1065586..1065807	+	73	119963843	-	AAur_1008	-	hypothetical protein
965	 65.93	+1	1065829..1067988	-	719	119961029	-	AAur_1009	-	putative multicopper oxidase family protein
966	 60.76	0	1068034..1068507	-	157	119963937	-	AAur_1010	-	hypothetical protein
967	 63.29	0	1068719..1070377	-	552	119961251	-	AAur_1011	-	putative ATP-dependent DNA helicase
968	 65.94	+1	1070421..1072886	-	821	119962941	-	AAur_1012	-	hypothetical protein
969	 61.98	0	1073382..1073765	+	127	119963261	-	AAur_1013	-	putative cold shock protein
970	 66.16	+1	1073774..1074361	+	195	119961864	-	AAur_1014	-	hypothetical protein
971	 65.06	0	1074405..1075712	+	435	119962255	-	AAur_1015	-	putative transmembrane efflux protein (MFS)
972	 65.16	+1	1075779..1076909	-	376	119961064	-	AAur_1016	-	phosphoserine aminotransferase
973	 62.93	0	1077203..1077898	+	231	119961741	-	AAur_1017	-	putative iron-dependent repressor
974	 68.46	+2	1078326..1079162	+	278	119962355	-	AAur_1018	-	M23 peptidase domain-containing protein
975	 66.29	+1	1079808..1080596	+	262	119961735	-	AAur_1019	-	hypothetical protein
976	 59.68	-1	1080813..1081313	+	166	119960536	-	AAur_1020	-	HNH endonuclease domain-containing protein
977	 64.76	0	1081356..1082300	+	314	119963939	-	AAur_1021	-	putative molybdopterin-guanine dinucleotide biosynthesis protein (mobA)
978	 65.93	+1	1082297..1083655	+	452	119961425	-	AAur_1022	-	putative molybdopterin biosynthesis protein (MoeA)
979	 60.92	0	1083683..1086013	+	776	119964214	-	AAur_1023	-	putative formate dehydrogenase
980	 64.87	0	1086015..1086905	+	296	119963927	fdhD	AAur_1024	-	formate dehydrogenase family accessory protein FdhD
981	 63.30	0	1087053..1090082	+	1009	119961757	-	AAur_1025	-	putative alpha-mannosidase
982	 56.75	-2	1090115..1091122	-	335	119964474	-	AAur_1026	-	hypothetical protein
983	 59.09	-1	1091125..1092021	-	298	119961001	-	AAur_1027	-	hypothetical protein
984	 62.58	0	1092068..1092874	-	268	119963324	-	AAur_1028	-	putative amino acid ABC transporter, ATP-binding protein
985	 61.67	0	1092861..1093520	-	219	119964017	-	AAur_1029	-	putative amino acid ABC transporter, permease protein
986	 61.40	0	1093521..1094336	-	271	119961444	-	AAur_1030	-	putative amino acid ABC transporter
987	 59.60	-1	1094567..1095274	-	235	119963273	-	AAur_1031	-	putative integral membrane protein
988	 65.15	+1	1095271..1095993	-	240	119962658	-	AAur_1032	-	hypothetical protein
989	 65.04	0	1096205..1097866	+	553	119960930	-	AAur_1033	-	putative ABC transporter, ATP-binding protein
990	 64.84	0	1097869..1099782	+	637	119961230	-	AAur_1034	-	putative ABC transporter, ATP-binding protein
991	 64.73	0	1099790..1100203	-	137	119963570	-	AAur_1035	-	MutT/nudix family protein
992	 61.22	0	1100200..1100658	-	152	119964461	-	AAur_1036	-	hypothetical protein
993	 64.91	0	1100841..1101638	+	265	119962674	-	AAur_1038	-	hypothetical protein
994	 62.52	0	1101798..1102376	-	192	119963063	-	AAur_1039	-	hypothetical protein
995	 66.43	+1	1102458..1103303	+	281	119963580	-	AAur_1040	-	extragenic suppressor protein
996	 63.96	0	1103383..1105929	+	848	119964268	pcrA	AAur_1041	-	ATP-dependent DNA helicase PcrA
997	 61.37	0	1105926..1106642	+	238	119961330	-	AAur_1042	-	putative lipoprotein
998	 55.21	-2	1106805..1106900	-	31	119962959	-	AAur_1043	-	hypothetical protein
999	 62.31	0	1106907..1108076	+	389	119964224	sucC	AAur_1044	-	succinyl-CoA synthetase subunit beta
1000	 62.13	0	1108089..1108991	+	300	119962638	sucD	AAur_1045	-	succinyl-CoA synthetase subunit alpha
1001	 61.73	0	1109129..1112047	-	972	119963150	-	AAur_1046	-	FG-GAP repeat-containing protein
1002	 64.02	0	1112169..1112960	-	263	119961865	-	AAur_1047	-	putative glutamine amidotransferases
1003	 65.80	+1	1113118..1114155	+	345	119961375	-	AAur_1048	-	hypothetical protein
1004	 65.28	+1	1114174..1115109	-	311	119963614	-	AAur_1049	-	hypothetical protein
1005	 65.95	+1	1115229..1116065	-	278	119962085	-	AAur_1050	-	hypothetical protein
1006	 67.53	+1	1116208..1117365	-	385	119962172	-	AAur_1051	-	putative integral membrane protein
1007	 60.93	0	1117360..1117812	+	150	119962832	-	AAur_1053	-	hypothetical protein
1008	 63.33	0	1117809..1118138	-	109	119963530	-	AAur_1052	-	hypothetical protein
1009	 63.04	0	1118781..1120298	-	505	119963954	-	AAur_1054	-	putative sodium:solute symporter family protein
1010	 62.85	0	1120565..1121140	+	191	119962079	-	AAur_1055	-	helix-turn-helix domain-containing protein
1011	 61.84	0	1121169..1122038	-	289	119962275	-	AAur_1056	-	hypothetical protein
1012	 62.87	0	1122294..1124267	-	657	119963352	-	AAur_1057	-	regulatory protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.