IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
835	 58.94	-1	918515..919459	+	314	119964089	-	AAur_0873	-	putative ribose ABC transporter
836	 59.15	-1	919521..921050	+	509	119963390	rbsA	AAur_0874	-	ribose ABC transporter, ATP-binding protein
837	 58.18	-1	921167..922120	+	317	119962833	rbsC	AAur_0875	-	ribose ABC transporter, permease protein
838	 60.56	0	922266..923051	-	261	119964016	-	AAur_0876	-	putative 3-oxoacyl-[acyl-carrier protein] reductase
839	 60.25	0	923194..923988	+	264	119962190	-	AAur_0878	-	putative 3-oxoacyl-[acyl-carrier protein] reductase
840	 62.92	0	923985..925025	-	346	119960629	-	AAur_0877	-	luciferase-like monooxygenase family protein
841	 61.66	0	924964..926202	-	412	119961196	-	AAur_0879	-	putative transmembrane efflux protein (MFS)
842	 62.31	0	926351..926809	+	152	119963881	-	AAur_0880	-	MarR family transcriptional regulator
843	 57.87	-1	926838..928577	-	579	119963684	-	AAur_0881	-	GAF domain-containing protein
844	 65.09	0	928843..929604	-	253	119964342	-	AAur_0882	-	putative DJ-1/PfpI family protein
845	 62.21	0	929665..930561	+	298	119963293	-	AAur_0883	-	LysR family transcriptional regulator
846	 64.44	0	930975..931691	+	238	119961882	-	AAur_0886	-	putative phosphatase
847	 62.87	0	931688..933322	-	544	119962347	-	AAur_0885	-	putative proteinase
848	 64.93	0	933331..934482	-	383	119962705	-	AAur_0887	-	DNA polymerase III subunit delta'
849	 66.38	+1	934479..935168	-	229	119963206	tmk	AAur_0888	-	thymidylate kinase
850	 65.82	+1	935242..936426	+	394	119963670	metB	AAur_0889	-	cystathionine gamma-synthase
851	 65.50	+1	936437..936778	+	113	119962711	-	AAur_0890	-	putative integral membrane protein
852	 65.20	+1	936804..937622	-	272	119963664	-	AAur_0891	-	hypothetical protein
853	 62.57	0	937713..938468	+	251	119963163	gpm	AAur_0892	-	phosphoglycerate mutase
854	 62.08	0	938537..939190	-	217	119960962	phoU	AAur_0893	-	phosphate transport system regulatory protein PhoU
855	 64.79	0	939444..940670	+	408	119961879	-	AAur_0894	-	putative signal transduction histidine kinase
856	 62.29	0	940685..941347	+	220	119963579	-	AAur_0895	-	two-component system response regulator
857	 65.74	+1	941443..941979	-	178	119964320	-	AAur_0896	-	putative lipoprotein
858	 54.66	-2	942273..942755	+	160	119961222	-	AAur_0897	-	putative CarD-like transcriptional regulator
859	 65.02	0	942837..943625	+	262	119962498	ispD	AAur_0898	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
860	 65.77	+1	943625..944182	+	185	119961914	ispF	AAur_0899	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
861	 58.47	-1	944175..944528	+	117	119961887	-	AAur_0900	-	putative lipoprotein
862	 64.67	0	944564..946018	+	484	119960845	cysS	AAur_0901	-	cysteinyl-tRNA synthetase
863	 64.25	0	946099..947091	+	330	119962649	-	AAur_0902	-	TrmH family RNA methyltransferase , group 3
864	 65.68	+1	947891..948700	-	269	119962063	-	AAur_0903	-	carbon-nitrogen family hydrolase
865	 62.78	0	948918..951053	+	711	119961929	glgX	AAur_0904	-	glycogen debranching enzyme GlgX
866	 61.18	0	951093..951566	+	157	119961309	-	AAur_0905	-	putative ribonuclease
867	 61.67	0	951573..951932	+	119	119961966	-	AAur_0906	-	hypothetical protein
868	 65.22	+1	952053..954686	-	877	119961238	glgP	AAur_0907	-	alpha-glucan phosphorylase
869	 63.46	0	954803..956890	+	695	119962232	-	AAur_0908	-	alpha-amylase family protein
870	 61.21	0	956890..958686	+	598	119964419	treS	AAur_0909	-	trehalose synthase
871	 63.44	0	958688..962344	+	1218	161897607	glgB	AAur_0910	-	1,4-alpha-glucan branching enzyme
872	 62.15	0	968309..968950	+	213	119962398	-	AAur_0914	-	hypothetical protein
873	 62.92	0	968985..969464	+	159	119962339	-	AAur_0915	-	acetyltransferase, GNAT family protein
874	 64.13	0	969472..970494	-	340	119961341	-	AAur_0916	-	LacI family transcriptional regulator
875	 64.72	0	970515..972368	-	617	119963831	-	AAur_0917	-	alpha-amylase family protein
876	 61.74	0	972471..973769	+	432	119964139	malE	AAur_0918	-	maltose-binding protein
877	 61.97	0	973867..975525	+	552	119962957	malF	AAur_0919	-	maltose ABC transporter, permease protein
878	 60.99	0	975525..976457	+	310	119961563	malG	AAur_0920	-	maltose ABC transporter, permease protein
879	 64.53	0	976460..978382	+	640	119961116	-	AAur_0921	-	alpha-amylase family protein
880	 65.28	+1	978513..979958	+	481	119963639	-	AAur_0922	-	putative glycolate oxidase, subunit GlcD
881	 65.91	+1	980178..981506	+	442	119963795	-	AAur_0923	-	major facilitator transporter
882	 63.74	0	981542..982054	+	170	119962727	-	AAur_0924	-	hypothetical protein
883	 63.50	0	982058..983287	-	409	119960713	-	AAur_0925	-	amidohydrolase family protein
884	 63.10	0	983516..984187	+	223	119961515	-	AAur_0926	-	GntR family transcriptional regulator
885	 63.84	0	984247..985662	-	471	119963726	-	AAur_0927	-	hypothetical protein
886	 63.45	0	985659..987242	-	527	119962520	nahA	AAur_0928	-	beta-N-acetylhexosaminidase
887	 62.79	0	987360..988442	-	360	119963487	-	AAur_0929	-	putative sugar ABC transportor, ATP-binding protein
888	 66.79	+1	988649..989446	-	265	119963738	otsB	AAur_0930	-	trehalose-phosphatase
889	 62.54	0	989436..990938	-	500	119962722	otsA	AAur_0931	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
890	 61.70	0	991081..991986	+	301	119962890	-	AAur_0932	-	DSBA-like thioredoxin domain-containing protein
891	 58.77	-1	992578..992691	-	37	119961285	-	AAur_0934	-	hypothetical protein
892	 65.39	+1	992688..993629	-	313	119962015	-	AAur_0935	-	hypothetical protein
893	 61.74	0	993919..994932	-	337	119960789	panE	AAur_0936	-	2-dehydropantoate 2-reductase
894	 61.43	0	995008..995943	-	311	119961324	-	AAur_0937	-	hypothetical protein
895	 54.32	-2	996155..996316	+	53	119964209	-	AAur_0938	-	hypothetical protein
896	 60.00	0	996716..997000	+	94	119961174	-	AAur_0939	-	hypothetical protein
897	 65.24	+1	997264..997752	-	162	119961608	-	AAur_0940	-	putative integral membrane protein
898	 56.14	-2	997850..997963	-	37	119961134	-	AAur_0941	-	hypothetical protein
899	 57.35	-1	998114..998854	-	246	119962987	-	AAur_0942	-	DedA family membrane protein
900	 62.09	0	998919..999923	-	334	119962067	-	AAur_0943	-	LacI family transcriptional regulator
901	 57.59	-1	1000037..1000939	-	300	119963479	-	AAur_0944	-	putative ABC-type sugar transport system, permease component
902	 57.48	-1	1000936..1001817	-	293	119960680	-	AAur_0945	-	putative ABC-type sugar transport systems, permease components
903	 59.72	-1	1001864..1003201	-	445	119963888	-	AAur_0946	-	putative extracellular sugar-binding protein
904	 63.19	0	1003251..1004687	-	478	119963756	-	AAur_0947	-	glycoside hydrolase family protein
905	 60.58	0	1004910..1006469	+	519	119961221	-	AAur_0948	-	putative levansucrase
906	 62.16	0	1006832..1007452	+	206	119961980	-	AAur_0949	-	hypothetical protein
907	 62.16	0	1007576..1009240	+	554	119962453	-	AAur_0950	-	ATP-dependent DNA helicase RecQ
908	 65.88	+1	1009262..1010149	-	295	119961822	-	AAur_0951	-	putative carbohydrate kinase family protein
909	 62.27	0	1010169..1010918	-	249	119960942	-	AAur_0952	-	phosphoglycerate mutase family protein
910	 60.73	0	1011079..1012374	+	431	119960834	-	AAur_0954	-	putative NADH dehydrogenase
911	 55.44	-2	1012360..1012644	-	94	119960844	-	AAur_0953	-	hypothetical protein
912	 61.44	0	1012751..1014109	-	452	119961961	-	AAur_0955	-	hypothetical protein
913	 60.93	0	1014088..1014819	-	243	119963137	-	AAur_0956	-	hypothetical protein
914	 49.73	-2	1014900..1015271	-	123	119962592	-	AAur_0957	-	hypothetical protein
915	 53.75	-2	1016016..1016348	+	110	119964152	-	AAur_0958	-	hypothetical protein
916	 61.28	0	1016562..1017248	+	228	119962580	-	AAur_0959	-	hypothetical protein
917	 61.87	0	1017480..1017938	-	152	119964470	-	AAur_0960	-	MarR family transcriptional regulator
918	 65.19	+1	1018078..1019028	+	316	119963659	-	AAur_0961	-	short chain dehydrogenase/reductase family oxidoreductase
919	 63.52	0	1019031..1019921	+	296	119960700	-	AAur_0962	-	amidohydrolase family protein
920	 62.67	0	1019923..1021149	+	408	119961259	-	AAur_0963	-	putative glutaryl-CoA dehydrogenase
921	 62.06	0	1021187..1021642	+	151	119960732	-	AAur_0964	-	MaoC-like domain-containing protein
922	 62.37	0	1021701..1023026	+	441	119961062	-	AAur_0965	-	major facilitator transporter
923	 61.70	0	1023039..1024589	+	516	119963319	menE	AAur_0966	-	O-succinylbenzoate-CoA ligase
924	 62.60	0	1024897..1025388	+	163	119964464	-	AAur_0967	-	putative protein of unknown function (DUF805)
925	 62.32	0	1025517..1026734	+	405	119961037	-	AAur_0968	-	hypothetical protein
926	 59.13	-1	1026735..1027490	-	251	119963581	-	AAur_0969	-	putative CAAX amino terminal protease family protein
927	 62.50	0	1027587..1027802	+	71	119962127	-	AAur_0970	-	hypothetical protein
928	 56.85	-2	1027895..1028230	+	111	119960663	-	AAur_0971	-	hypothetical protein
929	 64.47	0	1028447..1028992	+	181	119960600	-	AAur_0972	-	hypothetical protein
930	 62.12	0	1029104..1030642	-	512	119964253	-	AAur_0973	-	putative amino acid permease
931	 63.84	0	1030655..1031680	-	341	119960966	-	AAur_0974	-	putative peptidylarginine deiminase
932	 65.43	+1	1032040..1033578	+	512	119963249	-	AAur_0975	-	HNH endonuclease domain-containing protein
933	 64.17	0	1033592..1034392	-	266	119961548	map	AAur_0976	-	methionine aminopeptidase, type I
934	 64.03	0	1034439..1034741	+	100	119962844	-	AAur_0977	-	helix-turn-helix domain-containing protein
62.44	MEAN

2.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.