IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
733	 64.71	0	797981..798286	+	101	119961100	-	AAur_0765	-	hypothetical protein
734	 64.03	0	798310..798954	-	214	119963964	-	AAur_0766	-	DedA family membrane protein
735	 66.45	+1	799102..799560	+	152	119962531	-	AAur_0767	-	appr-1-p processing domain-containing protein
736	 63.18	0	799581..800240	-	219	119962893	-	AAur_0768	-	putative integral membrane protein
737	 63.44	0	800317..801246	-	309	119963365	-	AAur_0769	-	putative RNA pseudouridine synthase
738	 65.28	+1	801399..802049	+	216	119962262	-	AAur_0770	-	ArsR family transcriptional regulator
739	 61.76	0	802042..802734	+	230	119960780	-	AAur_0771	-	hypothetical protein
740	 63.73	0	803422..803931	+	169	119964490	-	AAur_0774	-	hypothetical protein
741	 67.42	+1	803928..805391	-	487	119964160	-	AAur_0773	-	GntR family transcriptional regulator
742	 63.97	0	805452..806081	+	209	119960541	-	AAur_0775	-	putative integral membrane protein
743	 64.29	0	806099..807319	-	406	119961250	-	AAur_0776	-	hypothetical protein
744	 66.67	+1	807322..807759	-	145	119961712	-	AAur_0777	-	STAS domain-containing protein
745	 62.60	0	807811..809754	-	647	119962432	-	AAur_0778	-	glycosyl transferase group 2 family protein
746	 61.92	0	810048..811310	+	420	119963204	-	AAur_0779	-	putative beta-1,3-glucanase
747	 64.98	0	811491..812321	-	276	119962578	-	AAur_0780	-	putative formamidopyrimidine-DNA glycosylase
748	 65.49	+1	812314..817260	-	1648	119963676	-	AAur_0781	-	putative ATP dependent DNA helicase
749	 65.81	+1	817316..818017	-	233	119961389	-	AAur_0782	-	hypothetical protein
750	 65.17	+1	818077..818811	-	244	119961811	-	AAur_0783	-	putative nuclear export factor GLE1 family protein
751	 66.67	+1	818937..819557	-	206	119960920	-	AAur_0784	-	hypothetical protein
752	 63.95	0	819768..820319	-	183	119964028	-	AAur_0785	-	hypothetical protein
753	 60.89	0	821627..822439	+	270	119961808	-	AAur_0786	-	hypothetical protein
754	 59.26	-1	822565..822699	+	44	119961311	-	AAur_0787	-	hypothetical protein
755	 64.48	0	823062..824069	+	335	119963332	-	AAur_0789	-	zinc-binding dehydrogenase family oxidoreductase
756	 65.41	+1	824073..824471	+	132	119962274	-	AAur_0790	-	putative 6-pyruvoyl tetrahydropterin synthase
757	 64.84	0	824657..825475	+	272	119961050	-	AAur_0791	-	putative glycosyl transferase, group 1 family protein
758	 64.50	0	825503..826747	+	414	119964476	-	AAur_0792	-	hypothetical protein
759	 61.68	0	826766..827146	-	126	119960838	-	AAur_0793	-	putative glyoxalase family protein
760	 66.48	+1	827169..827702	-	177	119961460	-	AAur_0794	-	putative cytidine/deoxycytidylate deaminase
761	 61.79	0	827725..828360	+	211	119963987	upp	AAur_0795	-	uracil phosphoribosyltransferase
762	 58.37	-1	828896..829534	+	212	119964302	-	AAur_0796	-	hypothetical protein
763	 60.32	0	829592..829969	+	125	119960683	-	AAur_0797	-	putative glyoxalase family protein
764	 67.38	+1	830029..830733	+	234	119963115	-	AAur_0798	-	putative haloacid dehalogenase-like hydrolase
765	 67.10	+1	830785..832176	+	463	119963744	-	AAur_0799	-	putative amino acid decarboxylase, pyridoxal-dependent protein
766	 65.00	0	832180..833199	-	339	119962471	-	AAur_0800	-	putative dolichyl-phosphate beta-glucosyltransferase
767	 65.29	+1	833483..834427	-	314	119962037	-	AAur_0801	-	hypothetical protein
768	 64.46	0	834642..836138	-	498	119962003	-	AAur_0802	-	putative signal transduction histidine kinase
769	 65.18	+1	836160..836900	-	246	119962132	-	AAur_0803	-	two-component system response regulator
770	 66.11	+1	837719..838441	+	240	119963523	-	AAur_0804	-	putative transcriptional regulatory protein
771	 60.38	0	838687..839211	+	174	119964293	-	AAur_0805	-	putative phosphohistidine phosphatase SixA
772	 59.67	-1	839260..839559	-	99	119963854	-	AAur_0806	-	hypothetical protein
773	 63.40	0	839713..840630	-	305	119960762	-	AAur_0807	-	LysR family transcriptional regulator
774	 63.13	0	840629..841618	+	329	119961334	-	AAur_0808	-	hypothetical protein
775	 63.83	0	841661..843139	-	492	119961576	-	AAur_0809	-	gamma-aminobutyraldehyde dehydrogenase
776	 63.27	0	843253..843930	-	225	119962428	-	AAur_0810	-	TetR family tetracycline repressor protein
777	 63.24	0	844126..845817	+	563	119960560	-	AAur_0811	-	putative amidohydrolase family protein
778	 61.70	0	845814..847523	+	569	119961447	-	AAur_0812	-	putative ABC-type peptide/oligopeptide transport system
779	 63.85	0	847525..848553	+	342	119962963	-	AAur_0813	-	putative ABC-type dipeptide/oligopeptide transport systems, permease components
780	 64.80	0	848550..849407	+	285	119961672	-	AAur_0814	-	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
781	 63.99	0	849404..851008	+	534	119963602	-	AAur_0815	-	putative ABC transporter, ATP-binding protein
782	 63.71	0	851075..852493	+	472	119961216	-	AAur_0816	-	putative oxidoreductase
783	 62.22	0	852656..853330	-	224	119961400	-	AAur_0817	-	hypothetical protein
784	 64.31	0	854077..856113	-	678	119963733	-	AAur_0819	-	putative ABC-2 type transporter
785	 65.17	+1	856110..856910	-	266	119964266	-	AAur_0820	-	hypothetical protein
786	 63.31	0	856982..858439	-	485	119962564	-	AAur_0821	-	pyridine nucleotide-disulphide oxidoreductase domain-containing protein
787	 62.90	0	858595..859416	+	273	119963108	-	AAur_0822	-	putative thiosulfate sulfurtransferase
788	 66.96	+1	859484..860170	-	228	119962371	-	AAur_0823	-	N-acetylmannosamine-6-phosphate 2-epimerase
789	 65.34	+1	860193..861173	-	326	119962420	-	AAur_0824	-	putative glucokinase
790	 64.08	0	861170..862096	-	308	119961819	-	AAur_0825	-	putative dihydrodipicolinate synthase
791	 63.73	0	862134..862949	-	271	119963266	-	AAur_0826	-	putative ABC transporter, ATP-binding protein
792	 64.20	0	862946..865057	-	703	119962917	-	AAur_0827	-	putative ABC-type dipeptide/oligopeptide transport system, ATPase component
793	 62.38	0	865061..866017	-	318	119963503	-	AAur_0828	-	putative ABC-type dipeptide/oligopeptide transport systems, permease components
794	 61.38	0	866119..867822	-	567	119962121	-	AAur_0829	-	extracellular solute-binding family protein 5
795	 60.36	0	868079..868807	+	242	119960666	-	AAur_0830	-	GntR family transcriptional regulator
796	 64.26	0	869304..871130	+	608	119961191	-	AAur_0832	-	phosphoenolpyruvate carboxykinase
797	 60.62	0	871220..872377	-	385	119961154	-	AAur_0833	-	putative flavohemoprotein
798	 62.42	0	872564..873034	-	156	119961490	-	AAur_0834	-	putative transcriptional regulator
799	 59.33	-1	873057..873506	-	149	119962070	-	AAur_0835	-	hypothetical protein
800	 62.51	0	873519..874937	-	472	119962905	manB	AAur_0836	-	phosphomannomutase
801	 65.19	+1	875063..877228	+	721	119963491	-	AAur_0837	-	ATP-dependent DNA helicase
802	 62.82	0	877360..878790	+	476	119964364	-	AAur_0838	-	putative transmembrane efflux protein (MFS)
803	 64.85	0	879098..881353	-	751	119963977	-	AAur_0840	-	putative prolyl oligopeptidase family protein
804	 64.96	0	881414..883351	+	645	119963165	-	AAur_0841	-	hypothetical protein
805	 61.62	0	883676..885142	+	488	119964229	-	AAur_0842	-	putative D-serine/D-alanine/glycine transporter
806	 63.93	0	885264..889793	-	1509	119961986	-	AAur_0843	-	putative 5'-nucleotidase family protein
807	 62.47	0	889984..890769	-	261	119962122	-	AAur_0844	-	putative glyoxalase family protein
808	 63.31	0	891152..892135	+	327	119962331	-	AAur_0846	-	putative quinone oxidoreductase
809	 63.33	0	892166..892705	+	179	119961269	-	AAur_0847	-	PadR family transcriptional regulator
810	 62.09	0	893256..895526	+	756	119964157	-	AAur_0848	-	putative carbon starvation protein CstA
811	 63.02	0	895539..895730	+	63	119961006	-	AAur_0849	-	hypothetical protein
812	 64.99	0	895822..896478	+	218	119963736	-	AAur_0850	-	hypothetical protein
813	 62.13	0	896487..896927	+	146	119962740	-	AAur_0851	-	hypothetical protein
814	 60.83	0	897064..897903	+	279	119963174	-	AAur_0852	-	putative 2,5-diketo-D-gluconic acid reductase
815	 64.05	0	898045..899001	+	318	119961286	-	AAur_0854	-	AsnC family transcriptional regulator
816	 63.42	0	898982..900430	-	482	119963957	-	AAur_0853	-	putative amidase
817	 63.78	0	900705..901466	+	253	119963650	-	AAur_0855	-	putative integral membrane protein
818	 62.59	0	901531..902265	+	244	119960633	-	AAur_0856	-	putative integral membrane protein
819	 65.61	+1	902309..903538	+	409	119962986	-	AAur_0857	-	putative metal-dependent amidase/aminoacylase/carboxypeptidase
820	 59.13	-1	903573..904196	+	207	119963438	-	AAur_0858	-	hypothetical protein
821	 60.98	0	904845..906338	-	497	119962315	-	AAur_0859	-	putative succinate-semialdehyde dehydrogenase
822	 59.46	-1	906774..907661	+	295	119961850	-	AAur_0860	-	putative transketolase subunit A
823	 58.07	-1	907658..908599	+	313	119963727	-	AAur_0861	-	putative transketolase subunit B
824	 61.93	0	908651..909664	+	337	119963239	fruK	AAur_0862	-	1-phosphofructokinase
825	 60.63	0	909752..910828	-	358	119962967	-	AAur_0863	-	putative NAD dependent epimerase/dehydratase family protein
826	 62.42	0	910954..911919	-	321	119963778	-	AAur_0864	-	putative NAD dependent epimerase/dehydratase family protein
827	 59.29	-1	911961..912299	-	112	119964100	-	AAur_0865	-	hypothetical protein
828	 57.82	-1	912315..912800	-	161	119961139	-	AAur_0866	-	hypothetical protein
829	 58.74	-1	912797..913591	-	264	119961440	-	AAur_0867	-	short chain dehydrogenase/reductase family oxidoreductase
830	 59.46	-1	913865..914752	-	295	119962134	-	AAur_0868	-	putative NAD dependent epimerase/dehydratase family protein
831	 61.18	0	914878..915843	-	321	119961761	-	AAur_0869	-	LysR family transcriptional regulator
832	 57.14	-1	916020..917027	+	335	119963367	-	AAur_0870	-	amidohydrolase family protein
62.44	MEAN

2.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.