IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
652	 64.81	0	704355..705002	+	215	119961008	-	AAur_0682	-	hypothetical protein
653	 67.10	+1	705129..705815	-	228	119960638	-	AAur_0683	-	TetR family transcriptional regulator
654	 62.77	0	705923..706924	+	333	119962847	-	AAur_0684	-	LacI family transcriptional regulator
655	 61.80	0	707110..708444	+	444	119963406	-	AAur_0685	-	extracellular solute-binding domain-containing protein
656	 60.59	0	708481..709401	+	306	119962971	-	AAur_0686	-	putative ABC-type sugar transport systems, permease components
657	 61.46	0	709404..710306	+	300	119964339	-	AAur_0687	-	putative ABC-type sugar transport system, permease component
658	 63.68	0	710356..711894	+	512	119961079	abfA	AAur_0688	-	alpha-L-arabinofuranosidase
659	 62.66	0	711992..712690	-	232	119962002	-	AAur_0689	-	DSBA-like thioredoxin domain-containing protein
660	 61.84	0	712838..713893	+	351	119961558	-	AAur_0690	-	putative glycosyl transferase, group 1 family protein
661	 65.36	+1	713890..716025	+	711	119962892	-	AAur_0691	-	putative glycogen debranching enzyme family protein
662	 63.84	0	716036..716566	-	176	119964462	-	AAur_0692	-	acetyltransferase, GNAT family protein
663	 60.01	0	716572..718074	-	500	119961854	-	AAur_0693	-	putative inulinase
664	 64.26	0	718067..719020	-	317	119962934	-	AAur_0694	-	fructokinase
665	 61.34	0	719068..720156	-	362	119963399	-	AAur_0695	-	LacI family transcriptional regulator
666	 59.59	-1	720226..721623	-	465	119961379	-	AAur_0696	-	putative inulin fructotransferase (DFA-III-forming)
667	 62.54	0	721634..722506	-	290	119963969	-	AAur_0697	-	ABC-type sugar transport system, permease component
668	 61.04	0	722599..723486	-	295	119960520	-	AAur_0698	-	putative ABC-type sugar transport system, permease component
669	 61.58	0	723559..724836	-	425	119963280	-	AAur_0699	-	putative extracellular sugar-binding protein
670	 63.10	0	726591..726983	-	130	119963755	-	AAur_0701	-	universal stress family domain-containing protein
671	 64.59	0	727016..728554	-	512	119961565	-	AAur_0702	-	putative integral membrane protein
672	 63.49	0	728554..729057	-	167	119962138	-	AAur_0703	-	putative integral membrane protein
673	 62.90	0	729054..730061	-	335	119963425	-	AAur_0704	-	putative lipoprotein, ATP binding protein
674	 63.69	0	730353..731930	+	525	119963450	-	AAur_0705	-	putative two component sensor histidine kinase
675	 61.32	0	731960..732595	+	211	119963015	-	AAur_0706	-	two-component system response regulator
676	 61.69	0	732609..732869	-	86	119963762	-	AAur_0707	-	addiction module toxin, RelE/StbE
677	 61.80	0	732866..733132	-	88	119962950	-	AAur_0708	-	prevent-host-death protein
678	 62.69	0	733184..734215	-	343	119961119	-	AAur_0709	-	putative luciferase-like monooxygenase protein
679	 56.44	-2	734361..734663	+	100	119963172	-	AAur_0710	-	helix-turn-helix domain-containing protein
680	 60.93	0	734663..735970	+	435	119961697	-	AAur_0711	-	HipA-like protein
681	 62.05	0	735978..736454	-	158	119963823	-	AAur_0712	-	hypothetical protein
682	 62.17	0	736458..737480	-	340	119964373	-	AAur_0713	-	oxidoreductase family protein
683	 63.19	0	737501..738220	-	239	119962812	-	AAur_0714	-	hypothetical protein
684	 65.87	+1	738232..739233	-	333	119963433	-	AAur_0715	-	hypothetical protein
685	 63.86	0	739235..740410	-	391	119962962	-	AAur_0716	-	putative myo-inositol 2-dehydrogenase
686	 65.51	+1	740428..741549	-	373	119963429	-	AAur_0717	-	NADH-dependent dehydrogenase
687	 61.78	0	741546..742322	-	258	119963099	-	AAur_0718	-	putative sugar phosphate isomerase/epimerase
688	 66.42	+1	742467..743702	+	411	119961990	-	AAur_0719	-	ROK family transcriptional regulator
689	 66.00	+1	743788..744981	+	397	119962340	-	AAur_0720	-	major facilitator transporter
690	 62.31	0	745201..746853	-	550	119963087	aceB	AAur_0721	-	malate synthase
691	 64.29	0	746967..748310	-	447	119962480	aceA	AAur_0722	-	isocitrate lyase
692	 63.44	0	748483..749970	+	495	119964507	-	AAur_0723	-	helix-turn-helix domain-containing protein
693	 62.75	0	750111..751412	+	433	119961090	-	AAur_0725	-	putative serpin (serine proteinase inhibitor) family protein
694	 61.20	0	752327..753259	+	310	119961960	-	AAur_0726	-	putative integral membrane protein
695	 63.43	0	753345..754241	-	298	119961243	-	AAur_0727	-	phosphomethylpyrimidine kinase
696	 66.20	+1	754234..755307	-	357	119961291	-	AAur_0728	-	TRAP transporter solute receptor
697	 64.19	0	755216..756631	-	471	119960733	-	AAur_0729	-	putative signal transduction histidine kinase
698	 63.80	0	756628..757290	-	220	119962486	-	AAur_0730	-	two-component system response regulator
699	 59.76	0	757476..758966	-	496	119963270	-	AAur_0731	-	putative MFS dicarboxylate transporter
700	 62.48	0	759192..759956	+	254	119962619	-	AAur_0732	-	hypothetical protein
701	 65.02	0	760351..761259	-	302	119961858	-	AAur_0733	-	putative NAD dependent epimerase/dehydratase family protein
702	 63.95	0	761256..761918	-	220	119961514	-	AAur_0734	-	TetR family transcriptional regulator
703	 61.74	0	762201..762911	+	236	119962815	-	AAur_0735	-	putative integral membrane protein
704	 63.23	0	762993..764303	-	436	119963394	tgt	AAur_0736	-	queuine tRNA-ribosyltransferase
705	 61.74	0	764351..765061	-	236	119963915	-	AAur_0737	-	hypothetical protein
706	 65.65	+1	765122..766105	-	327	119961203	-	AAur_0738	-	hypothetical protein
707	 64.26	0	766179..766718	-	179	119961718	-	AAur_0739	-	hypothetical protein
708	 67.00	+1	766796..767404	-	202	119962826	-	AAur_0740	-	putative demethylmenaquinone methyltransferase
709	 63.48	0	767401..767808	-	135	119960813	-	AAur_0741	-	L-PSP family endoribonuclease
710	 63.23	0	767805..769172	-	455	119963225	-	AAur_0742	-	major facilitator transporter
711	 66.50	+1	769328..770545	-	405	119963077	-	AAur_0743	-	hypothetical protein
712	 62.76	0	770676..772007	+	443	119962624	-	AAur_0744	-	major facilitator transporter
713	 67.78	+1	772004..773623	+	539	119962437	-	AAur_0745	-	putative acetolactate synthase, large subunit
714	 65.10	0	773638..775044	+	468	119961977	-	AAur_0746	-	aldehyde dehydrogenase
715	 67.01	+1	775053..776789	+	578	119964188	-	AAur_0747	-	putative amidohydrolase family protein
716	 65.79	+1	776798..778054	+	418	119963769	-	AAur_0749	-	putative N-carbamoyl-L-amino acid amidohydrolase
717	 64.09	0	778051..778749	-	232	119963074	-	AAur_0748	-	hypothetical protein
718	 64.48	0	778824..779417	+	197	119960672	-	AAur_0750	-	hypothetical protein
719	 64.43	0	779431..780546	-	371	119961390	sufC	AAur_0751	-	iron(III)-transport ATP-binding protein
720	 62.67	0	780594..782195	-	533	119961593	sfuB	AAur_0752	-	Iron(III)-transport system permease protein
721	 60.10	0	782200..783249	-	349	119963832	sufA	AAur_0753	-	iron(III)-binding protein
722	 64.08	0	783424..784506	-	360	119964413	-	AAur_0754	-	putative alpha-1,6-mannanase
723	 65.03	0	784710..785504	+	264	119962904	-	AAur_0755	-	3-hydroxyacyl-CoA dehydrogenase
724	 61.70	0	785501..786808	+	435	119961860	-	AAur_0756	-	putative glutaryl-CoA dehydrogenase
725	 62.80	0	786835..787662	-	275	119963534	-	AAur_0757	-	putative protein of unknown function (DUF1684)
726	 59.43	-1	787923..788792	-	289	119963901	-	AAur_0758	-	hypothetical protein
727	 61.69	0	788858..790504	+	548	119961434	-	AAur_0759	-	sigma-70 region 2 domain-containing protein
728	 59.71	-1	790514..791533	+	339	119964098	-	AAur_0760	-	hypothetical protein
729	 63.05	0	791533..792444	+	303	119961655	-	AAur_0761	-	hypothetical protein
730	 59.34	-1	792441..793736	+	431	119963223	-	AAur_0762	-	glycosyl transferase group 2 family protein
731	 60.45	0	793787..794848	+	353	119962311	-	AAur_0763	-	hypothetical protein
732	 61.91	0	795077..797875	+	932	119962288	ppc	AAur_0764	-	phosphoenolpyruvate carboxylase
733	 64.71	0	797981..798286	+	101	119961100	-	AAur_0765	-	hypothetical protein
734	 64.03	0	798310..798954	-	214	119963964	-	AAur_0766	-	DedA family membrane protein
735	 66.45	+1	799102..799560	+	152	119962531	-	AAur_0767	-	appr-1-p processing domain-containing protein
736	 63.18	0	799581..800240	-	219	119962893	-	AAur_0768	-	putative integral membrane protein
737	 63.44	0	800317..801246	-	309	119963365	-	AAur_0769	-	putative RNA pseudouridine synthase
738	 65.28	+1	801399..802049	+	216	119962262	-	AAur_0770	-	ArsR family transcriptional regulator
739	 61.76	0	802042..802734	+	230	119960780	-	AAur_0771	-	hypothetical protein
740	 63.73	0	803422..803931	+	169	119964490	-	AAur_0774	-	hypothetical protein
741	 67.42	+1	803928..805391	-	487	119964160	-	AAur_0773	-	GntR family transcriptional regulator
742	 63.97	0	805452..806081	+	209	119960541	-	AAur_0775	-	putative integral membrane protein
743	 64.29	0	806099..807319	-	406	119961250	-	AAur_0776	-	hypothetical protein
744	 66.67	+1	807322..807759	-	145	119961712	-	AAur_0777	-	STAS domain-containing protein
745	 62.60	0	807811..809754	-	647	119962432	-	AAur_0778	-	glycosyl transferase group 2 family protein
746	 61.92	0	810048..811310	+	420	119963204	-	AAur_0779	-	putative beta-1,3-glucanase
747	 64.98	0	811491..812321	-	276	119962578	-	AAur_0780	-	putative formamidopyrimidine-DNA glycosylase
748	 65.49	+1	812314..817260	-	1648	119963676	-	AAur_0781	-	putative ATP dependent DNA helicase
749	 65.81	+1	817316..818017	-	233	119961389	-	AAur_0782	-	hypothetical protein
750	 65.17	+1	818077..818811	-	244	119961811	-	AAur_0783	-	putative nuclear export factor GLE1 family protein
751	 66.67	+1	818937..819557	-	206	119960920	-	AAur_0784	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.