IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
587	 59.28	-1	633373..634266	+	297	119961618	-	AAur_0614	-	putative ABC-type sugar transport system, permease component
588	 61.06	0	634388..634708	+	106	119960701	-	AAur_0615	-	antibiotic biosynthesis monooxygenase domain-containing protein
589	 65.14	+1	634831..635355	-	174	119962695	-	AAur_0616	-	nitrilotriacetate monooxygenase component b
590	 61.02	0	635357..635728	-	123	119963586	-	AAur_0617	-	hypothetical protein
591	 63.61	0	635731..637203	-	490	119961487	-	AAur_0618	-	putative 4-hydroxyphenylacetate 3-monooxygenase
592	 59.80	0	637203..637886	-	227	119960889	-	AAur_0619	-	hypothetical protein
593	 64.15	0	637924..638718	-	264	119962704	-	AAur_0620	-	carbon-nitrogen family hydrolase
594	 61.89	0	638715..640076	-	453	119964141	-	AAur_0621	-	major facilitator transporter
595	 61.21	0	640298..640939	+	213	119963674	-	AAur_0623	-	GntR family transcriptional regulator
596	 63.27	0	640936..641229	-	97	119961282	-	AAur_0622	-	putative protein of unknown function (DUF503)
597	 55.49	-2	641324..641833	-	169	119962433	-	AAur_0624	-	hypothetical protein
598	 57.66	-1	641823..642155	-	110	119962148	-	AAur_0625	-	hypothetical protein
599	 61.15	0	642308..643486	+	392	119961555	-	AAur_0626	-	GGDEF domain-containing protein
600	 62.30	0	643483..643986	+	167	119963229	-	AAur_0627	-	hypothetical protein
601	 63.50	0	643983..645401	+	472	119962652	-	AAur_0628	-	GGDEF domain/EAL domain-containing protein
602	 65.24	+1	645476..647785	-	769	119964003	purL	AAur_0629	-	phosphoribosylformylglycinamidine synthase II
603	 63.81	0	647782..648552	-	256	119961814	purQ	AAur_0630	-	phosphoribosylformylglycinamidine synthase I
604	 63.89	0	648554..648805	-	83	119960885	purS	AAur_0631	-	phosphoribosylformylglycinamidine synthase, purS protein
605	 59.56	-1	649111..649293	+	60	119960667	-	AAur_0632	-	hypothetical protein
606	 60.19	0	649434..649742	-	102	119961142	-	AAur_0633	-	hypothetical protein
607	 60.89	0	649809..650777	-	322	119961885	-	AAur_0634	-	catalase, Mn-containing
608	 64.77	0	650903..651850	-	315	119963654	-	AAur_0635	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
609	 64.84	0	651982..654996	+	1004	119963934	-	AAur_0636	-	BNR/Asp-box repeat-containing protein
610	 63.40	0	655313..658432	+	1039	119962708	-	AAur_0637	-	putative subtilisin-like serine proteinase protein
611	 62.72	0	658523..658927	-	134	119963068	-	AAur_0638	-	hypothetical protein
612	 64.54	0	658957..659895	-	312	119961927	-	AAur_0639	-	hypothetical protein
613	 67.98	+2	659882..660415	-	177	119962487	-	AAur_0640	-	putative lipoprotein
614	 63.85	0	660529..660990	-	153	119961263	-	AAur_0641	-	MarR family transcriptional regulator
615	 63.11	0	661107..661331	+	74	119963643	-	AAur_0642	-	hypothetical protein
616	 61.62	0	662339..663052	+	237	119964505	-	AAur_0644	-	putative glycine betaine/carnitine/choline ABC transporter
617	 63.32	0	663045..664061	+	338	119962919	-	AAur_0645	-	putative glycine betaine/L-proline transport ATP binding subunit
618	 62.21	0	664058..664843	+	261	119961298	opuCB	AAur_0646	-	glycine betaine/carnitine/choline transport system permease
619	 61.11	0	664872..665807	+	311	119963764	-	AAur_0647	-	glycine/betaine ABC transporter substrate binding protein
620	 64.44	0	665780..666319	+	179	119963587	-	AAur_0648	-	putative formaldehyde-activating enzyme
621	 63.86	0	666325..667428	+	367	119963097	-	AAur_0649	-	putative mandelate racemase/muconate lactonizing enzyme
622	 65.15	+1	667439..668956	+	505	119962400	-	AAur_0650	-	aldehyde dehydrogenase (NAD) family protein
623	 64.96	0	668972..669970	+	332	119963761	mmsB	AAur_0651	-	3-hydroxyisobutyrate dehydrogenase
624	 66.08	+1	669976..671163	+	395	119963291	-	AAur_0652	-	NAD(P)-dependent methanol dehydrogenase
625	 65.20	+1	671164..672663	+	499	119960856	-	AAur_0653	-	putative succinate-semialdehyde dehydrogenase
626	 65.05	0	672663..673343	+	226	119962360	-	AAur_0654	-	short chain dehydrogenase/reductase family oxidoreductase
627	 58.87	-1	673443..673673	+	76	119961888	-	AAur_0655	-	hypothetical protein
628	 63.80	0	673844..674227	+	127	119963269	-	AAur_0656	-	hypothetical protein
629	 60.00	0	674336..674635	-	99	119960951	-	AAur_0657	-	hypothetical protein
630	 64.86	0	674791..677286	-	831	119961086	-	AAur_0658	-	Beta-glucosidase
631	 62.21	0	677286..678542	-	418	119963170	-	AAur_0659	-	major facilitator transporter
632	 62.14	0	679436..680782	-	448	119963652	ask	AAur_0661	-	aspartate kinase
633	 62.22	0	680943..681662	-	239	119963890	-	AAur_0662	-	hypothetical protein
634	 65.45	+1	681697..682686	+	329	119962095	-	AAur_0664	-	putative integral membrane protein
635	 60.89	0	682667..683272	-	201	119963022	-	AAur_0663	-	riboflavin biosynthesis protein RibD
636	 61.67	0	683309..683908	-	199	119961171	recR	AAur_0665	-	recombination protein RecR
637	 67.35	+1	683942..687028	-	1028	119962449	dnaX	AAur_0666	-	DNA polymerase III subunits gamma and tau
638	 62.65	0	687451..687774	-	107	119962896	-	AAur_0667	-	hypothetical protein
639	 63.69	0	688326..689399	+	357	119960967	-	AAur_0670	-	putative acyltransferase
640	 66.24	+1	689396..690322	-	308	119961435	-	AAur_0669	-	LysR family transcriptional regulator
641	 65.95	+1	690446..693919	+	1157	119964202	-	AAur_0671	-	putative proline dehydrogenase
642	 66.45	+1	694086..695006	-	306	119961266	-	AAur_0672	-	hypothetical protein
643	 62.75	0	695052..696530	-	492	119963052	-	AAur_0673	-	putative transmembrane efflux protein (MFS)
644	 61.36	0	696592..696987	+	131	119961607	-	AAur_0674	-	MarR family transcriptional regulator
645	 66.60	+1	697143..698690	+	515	119963507	-	AAur_0675	-	M23 peptidase domain-containing protein
646	 59.42	-1	698768..699250	+	160	119960656	-	AAur_0676	-	glutathione peroxidase
647	 64.02	0	699393..700376	+	327	119962173	-	AAur_0678	-	putative 3'',5''-cyclic-nucleotide phosphodiesterase
648	 63.28	0	700354..701769	-	471	119961710	-	AAur_0677	-	hypothetical protein
649	 62.22	0	702065..703009	+	314	119963448	-	AAur_0679	-	hypothetical protein
650	 58.86	-1	703014..703871	+	285	119964479	-	AAur_0680	-	hypothetical protein
651	 59.33	-1	704033..704332	+	99	119964026	-	AAur_0681	-	hypothetical protein
652	 64.81	0	704355..705002	+	215	119961008	-	AAur_0682	-	hypothetical protein
653	 67.10	+1	705129..705815	-	228	119960638	-	AAur_0683	-	TetR family transcriptional regulator
654	 62.77	0	705923..706924	+	333	119962847	-	AAur_0684	-	LacI family transcriptional regulator
655	 61.80	0	707110..708444	+	444	119963406	-	AAur_0685	-	extracellular solute-binding domain-containing protein
656	 60.59	0	708481..709401	+	306	119962971	-	AAur_0686	-	putative ABC-type sugar transport systems, permease components
657	 61.46	0	709404..710306	+	300	119964339	-	AAur_0687	-	putative ABC-type sugar transport system, permease component
658	 63.68	0	710356..711894	+	512	119961079	abfA	AAur_0688	-	alpha-L-arabinofuranosidase
659	 62.66	0	711992..712690	-	232	119962002	-	AAur_0689	-	DSBA-like thioredoxin domain-containing protein
660	 61.84	0	712838..713893	+	351	119961558	-	AAur_0690	-	putative glycosyl transferase, group 1 family protein
661	 65.36	+1	713890..716025	+	711	119962892	-	AAur_0691	-	putative glycogen debranching enzyme family protein
662	 63.84	0	716036..716566	-	176	119964462	-	AAur_0692	-	acetyltransferase, GNAT family protein
663	 60.01	0	716572..718074	-	500	119961854	-	AAur_0693	-	putative inulinase
664	 64.26	0	718067..719020	-	317	119962934	-	AAur_0694	-	fructokinase
665	 61.34	0	719068..720156	-	362	119963399	-	AAur_0695	-	LacI family transcriptional regulator
666	 59.59	-1	720226..721623	-	465	119961379	-	AAur_0696	-	putative inulin fructotransferase (DFA-III-forming)
667	 62.54	0	721634..722506	-	290	119963969	-	AAur_0697	-	ABC-type sugar transport system, permease component
668	 61.04	0	722599..723486	-	295	119960520	-	AAur_0698	-	putative ABC-type sugar transport system, permease component
669	 61.58	0	723559..724836	-	425	119963280	-	AAur_0699	-	putative extracellular sugar-binding protein
670	 63.10	0	726591..726983	-	130	119963755	-	AAur_0701	-	universal stress family domain-containing protein
671	 64.59	0	727016..728554	-	512	119961565	-	AAur_0702	-	putative integral membrane protein
672	 63.49	0	728554..729057	-	167	119962138	-	AAur_0703	-	putative integral membrane protein
673	 62.90	0	729054..730061	-	335	119963425	-	AAur_0704	-	putative lipoprotein, ATP binding protein
674	 63.69	0	730353..731930	+	525	119963450	-	AAur_0705	-	putative two component sensor histidine kinase
675	 61.32	0	731960..732595	+	211	119963015	-	AAur_0706	-	two-component system response regulator
676	 61.69	0	732609..732869	-	86	119963762	-	AAur_0707	-	addiction module toxin, RelE/StbE
677	 61.80	0	732866..733132	-	88	119962950	-	AAur_0708	-	prevent-host-death protein
678	 62.69	0	733184..734215	-	343	119961119	-	AAur_0709	-	putative luciferase-like monooxygenase protein
679	 56.44	-2	734361..734663	+	100	119963172	-	AAur_0710	-	helix-turn-helix domain-containing protein
680	 60.93	0	734663..735970	+	435	119961697	-	AAur_0711	-	HipA-like protein
681	 62.05	0	735978..736454	-	158	119963823	-	AAur_0712	-	hypothetical protein
682	 62.17	0	736458..737480	-	340	119964373	-	AAur_0713	-	oxidoreductase family protein
683	 63.19	0	737501..738220	-	239	119962812	-	AAur_0714	-	hypothetical protein
684	 65.87	+1	738232..739233	-	333	119963433	-	AAur_0715	-	hypothetical protein
685	 63.86	0	739235..740410	-	391	119962962	-	AAur_0716	-	putative myo-inositol 2-dehydrogenase
686	 65.51	+1	740428..741549	-	373	119963429	-	AAur_0717	-	NADH-dependent dehydrogenase
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.