IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3942	 57.47	-1	4484783..4487359	+	858	119963027	-	AAur_4108	-	transcriptional regulator
3943	 60.21	0	4487450..4488022	+	190	119962645	-	AAur_4109	-	putative transcriptional regulatory protein
3944	 58.77	-1	4488028..4489407	-	459	119964203	-	AAur_4110	-	UDP-glucose 6-dehydrogenase
3945	 60.15	0	4489477..4490427	-	316	119963740	-	AAur_4111	-	hypothetical protein
3946	 57.66	-1	4490431..4491396	-	321	119961270	-	AAur_4112	-	GDP-fucose synthetase
3947	 56.17	-2	4491393..4492430	-	345	119960832	gmd	AAur_4113	-	GDP-mannose 4,6-dehydratase
3948	 59.90	0	4492476..4493702	-	408	119962454	-	AAur_4114	-	putative glycosyl transferase, group 1 family protein
3949	 57.72	-1	4493785..4494030	-	81	119961688	-	AAur_4115	-	hypothetical protein
3950	 58.73	-1	4494900..4495466	+	188	119964159	-	AAur_4116	-	acetyltransferase-like protein
3951	 53.93	-2	4495463..4496797	+	444	119962654	-	AAur_4117	-	AraC family regulatory protein
3952	 60.46	0	4496806..4498158	+	450	119963562	-	AAur_4118	-	putative integral membrane protein
3953	 61.81	0	4498178..4499041	+	287	119963246	-	AAur_4119	-	hypothetical protein
3954	 60.34	0	4499074..4500321	+	415	119960943	-	AAur_4120	-	putative glycosyl transferase, group 1 family protein
3955	 56.51	-2	4500356..4501399	+	347	119964454	-	AAur_4121	-	putative glycosyl transferase, group 1 family protein
3956	 59.66	-1	4501407..4502591	+	394	119962757	-	AAur_4122	-	putative glycosyl transferase, group 1 family protein
3957	 60.90	0	4502791..4503102	+	103	119961809	-	AAur_4123	-	hypothetical protein
3958	 60.25	0	4503243..4504925	+	560	119963655	-	AAur_4124	-	putative cell surface polysaccharide biosynthesis
3959	 58.42	-1	4505606..4507096	-	496	119962778	-	AAur_4125	-	putative glucosyltransferase
3960	 56.79	-2	4507474..4508202	+	242	119963403	-	AAur_4126	-	hypothetical protein
3961	 56.34	-2	4509265..4509816	-	183	119962672	-	AAur_4127	-	Tat pathway signal sequence domain-containing protein
3962	 62.04	0	4510051..4511304	-	417	119961025	-	AAur_4128	-	hypothetical protein
3963	 63.46	0	4511663..4512316	-	217	119961623	-	AAur_4129	-	GntR family transcriptional regulator
3964	 63.86	0	4512437..4513432	-	331	119963687	-	AAur_4130	-	putative transketolase subunit B
3965	 65.86	+1	4513429..4514292	-	287	119962589	-	AAur_4131	-	putative transketolase subunit A
3966	 61.70	0	4514385..4515794	-	469	119963299	-	AAur_4132	-	major facilitator transporter
3967	 64.29	0	4515926..4516768	+	280	119961962	-	AAur_4133	-	hypothetical protein
3968	 65.37	+1	4516798..4517571	+	257	119960783	-	AAur_4134	-	short chain dehydrogenase/reductase family oxidoreductase
3969	 66.84	+1	4517606..4519342	+	578	119961165	-	AAur_4135	-	putative dihydroxyacetone kinase
3970	 62.96	0	4519353..4519811	+	152	119963540	rpiB	AAur_4136	-	ribose 5-phosphate isomerase
3971	 57.81	-1	4519897..4520280	+	127	119962771	-	AAur_4137	-	hypothetical protein
3972	 59.75	0	4520539..4521261	-	240	119963383	-	AAur_4138	-	putative lipoprotein
3973	 61.12	0	4521361..4522749	-	462	119961825	dnaB	AAur_4139	-	replicative DNA helicase
3974	 61.67	0	4523336..4523815	+	159	119964369	-	AAur_4140	-	hypothetical protein
3975	 61.11	0	4523823..4524398	+	191	119962955	-	AAur_4141	-	hypothetical protein
3976	 53.92	-2	4524581..4526431	-	616	119963486	-	AAur_4142	-	Tat pathway signal sequence domain-containing protein
3977	 63.41	0	4527146..4527514	-	122	119963794	-	AAur_4143	-	hypothetical protein
3978	 65.71	+1	4527552..4528178	-	208	119964379	-	AAur_4144	-	putative NADH-dependent FMN reductase
3979	 60.54	0	4528590..4529666	-	358	119961328	-	AAur_4145	-	putative lipase/esterase protein
3980	 62.04	0	4529826..4531337	+	503	119963708	-	AAur_4146	-	putative gluconate transporter
3981	 63.63	0	4531381..4532631	+	416	119962239	-	AAur_4147	-	CAIB/BAIF family acyl-CoA thioesterase
3982	 63.60	0	4532628..4533605	+	325	119964301	-	AAur_4148	-	putative hydroxymethylglutaryl-CoA lyase
3983	 66.06	+1	4533608..4534597	+	329	119963595	-	AAur_4149	-	glyoxylate reductase
3984	 66.23	+1	4534648..4535565	+	305	119961108	-	AAur_4150	-	putative glycerate kinase
3985	 62.89	0	4535575..4536024	-	149	119960589	-	AAur_4151	-	hypothetical protein
3986	 57.48	-1	4536105..4536398	-	97	119962056	-	AAur_4152	-	hypothetical protein
3987	 62.32	0	4536442..4537407	+	321	119963533	-	AAur_4153	-	hypothetical protein
3988	 58.78	-1	4537414..4538313	-	299	119963133	-	AAur_4154	-	diacylglycerol kinase catalytic subunit
3989	 63.36	0	4538346..4539101	-	251	119964414	-	AAur_4155	-	hypothetical protein
3990	 54.97	-2	4539101..4539271	-	56	119963838	-	AAur_4156	-	hypothetical protein
3991	 62.25	0	4539296..4540087	-	263	119960926	-	AAur_4157	-	IclR family transcriptional regulator
3992	 63.27	0	4540146..4540823	+	225	119960717	-	AAur_4158	-	putative ABC transporter, ATP-binding protein
3993	 65.30	+1	4540825..4542357	+	510	119963411	-	AAur_4159	-	putative integral membrane protein
3994	 65.49	+1	4542364..4543215	-	283	119962960	-	AAur_4160	-	PhzF family phenazine biosynthesis protein
3995	 63.36	0	4543274..4543696	+	140	119964243	-	AAur_4161	-	hypothetical protein
3996	 60.93	0	4543774..4544226	-	150	119963887	rplI	AAur_4162	-	50S ribosomal protein L9
3997	 58.33	-1	4544245..4544484	-	79	119961039	rpsR	AAur_4163	-	ribosomal protein S18
3998	 61.00	0	4544613..4545194	-	193	119960570	ssb	AAur_4164	-	single-strand binding protein
3999	 54.25	-2	4545245..4545550	-	101	119962193	rpsF	AAur_4165	-	ribosomal protein S6
4000	 65.19	+1	4545783..4546121	+	112	119963898	-	AAur_4166	-	hypothetical protein
4001	 55.78	-2	4546417..4546563	+	48	119964303	-	AAur_4168	-	hypothetical protein
4002	 62.19	0	4546631..4548037	-	468	119961057	-	AAur_4169	-	putative GABA permease (4-amino butyrate transport carrier)
4003	 63.76	0	4548260..4549567	-	435	119961581	-	AAur_4170	-	putative aminopeptidase 2
4004	 63.09	0	4549605..4550498	-	297	119962051	-	AAur_4171	-	putative dioxygenase subfamily protein
4005	 62.77	0	4550561..4551253	-	230	119963933	-	AAur_4172	-	two-component system response regulator
4006	 62.05	0	4551250..4552419	-	389	119964394	-	AAur_4173	-	putative signal transduction histidine kinase
4007	 62.68	0	4552566..4553417	-	283	119960691	-	AAur_4174	-	putative ABC transporter transmembrane protein
4008	 62.65	0	4553420..4554364	-	314	119964438	-	AAur_4175	-	putative ABC transporter, ATP-binding protein
4009	 64.60	0	4554530..4556032	-	500	119963950	-	AAur_4176	-	PAP2 superfamily domain-containing protein
4010	 61.25	0	4556055..4556792	+	245	119963402	-	AAur_4178	-	PAP2 superfamily domain-containing protein
4011	 65.57	+1	4556737..4557924	-	395	119962876	-	AAur_4177	-	major facilitator transporter
4012	 63.28	0	4557921..4558688	-	255	119962209	-	AAur_4179	-	DeoR family transcriptional regulator
4013	 63.52	0	4558844..4560526	-	560	119960996	-	AAur_4180	-	putative ABC transporter, ATP-binding protein
4014	 61.03	0	4560678..4562237	+	519	119960582	-	AAur_4182	-	putative beta-lactamase family protein
4015	 63.24	0	4562221..4564290	-	689	119964007	-	AAur_4181	-	penicillin binding protein transpeptidase domain-containing protein
4016	 62.93	0	4564332..4568180	-	1282	119963322	-	AAur_4183	-	glycoside hydrolase family protein
4017	 64.54	0	4568305..4568961	-	218	119964172	-	AAur_4184	-	two-component system response regulator
4018	 64.17	0	4568958..4570238	-	426	119961288	-	AAur_4185	-	putative signal transduction histidine kinase
4019	 63.43	0	4570434..4571513	+	359	119960540	-	AAur_4186	-	putative ABC transporter, permease protein
4020	 63.66	0	4571538..4572236	+	232	119961918	-	AAur_4188	-	putative ABC transporter, ATP-binding protein
4021	 63.13	0	4572233..4572628	-	131	119961683	-	AAur_4187	-	putative transcriptional regulator protein
4022	 64.19	0	4572729..4573334	+	201	119963122	-	AAur_4189	-	hypothetical protein
4023	 63.69	0	4573340..4574785	-	481	119964174	-	AAur_4190	-	putative dehydrogenase
4024	 61.85	0	4574778..4576250	-	490	119963741	-	AAur_4191	-	putative integral membrane protein
4025	 58.16	-1	4576426..4576566	-	46	119961267	-	AAur_4192	-	hypothetical protein
4026	 61.00	0	4577166..4577747	-	193	119961972	-	AAur_4193	-	phosphoglycerate mutase family protein
4027	 62.58	0	4577744..4579210	-	488	119964423	-	AAur_4194	-	putative RNA nucleotidyltransferase
4028	 63.52	0	4579275..4579910	+	211	119962886	-	AAur_4195	-	MutT/nudix family protein
4029	 64.78	0	4579997..4581952	+	651	119963917	mviN	AAur_4196	-	integral membrane protein MviN
4030	 63.84	0	4582092..4583753	+	553	119961113	-	AAur_4197	-	hypothetical protein
4031	 60.19	0	4584013..4584939	+	308	119962276	trxB	AAur_4198	-	thioredoxin-disulfide reductase
4032	 54.07	-2	4585934..4586068	-	44	119961040	-	AAur_4200	-	hypothetical protein
4033	 47.10	-2	4586179..4586316	-	45	119962932	-	AAur_4201	-	hypothetical protein
4034	 55.91	-2	4588158..4588250	-	30	119962392	-	AAur_4202	-	hypothetical protein
4035	 60.82	0	4591548..4592795	-	415	119962086	-	AAur_4203	-	putative chromosome partitioning protein (ParB)
4036	 57.26	-1	4592863..4593915	-	350	119963412	-	AAur_4204	-	putative ParA-family protein
4037	 58.68	-1	4594003..4594653	-	216	119963842	gidB	AAur_4205	-	methyltransferase GidB
4038	 60.51	0	4594660..4595211	-	183	119961218	-	AAur_4206	-	putative jag-like protein
4039	 59.29	-1	4595211..4596200	-	329	119963653	-	AAur_4207	-	putative 60Kd inner membrane family protein
4040	 61.93	0	4596217..4596702	-	161	119961135	-	AAur_4208	-	hypothetical protein
4041	 67.39	+1	4597084..4597221	-	45	119962693	rpmH	AAur_4209	-	ribosomal protein L34
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.