IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3504	 68.55	+2	4000429..4000746	-	105	119962678	-	AAur_3649	-	hypothetical protein
3505	 62.39	0	4001561..4002121	+	186	119963981	-	AAur_3651	-	low molecular weight phosphotyrosine protein phosphatase
3506	 66.32	+1	4002118..4004163	+	681	119963437	pabB	AAur_3652	-	para-aminobenzoate synthase, component I
3507	 59.39	-1	4004168..4005568	-	466	119962100	-	AAur_3653	-	cardiolipin synthetase
3508	 64.01	0	4005728..4006669	+	313	119961089	-	AAur_3654	-	4-amino-4-deoxychorismate lyase
3509	 62.27	0	4006925..4008379	+	484	119960646	-	AAur_3655	-	putative amino acid permease
3510	 57.35	-1	4008663..4009145	-	160	119964251	-	AAur_3656	-	4-carboxymuconolactone decarboxylase domain-containing protein
3511	 56.25	-2	4009155..4009298	-	47	119963856	-	AAur_3657	-	hypothetical protein
3512	 66.29	+1	4009455..4010528	-	357	119964308	-	AAur_3658	-	pyridoxal-phosphate dependent enzyme
3513	 66.35	+1	4010522..4012090	-	522	119963464	hutH	AAur_3659	-	histidine ammonia-lyase
3514	 61.78	0	4012090..4013418	-	442	119962477	-	AAur_3660	-	putative dibenzothiophene desulfurization enzyme
3515	 64.14	0	4013573..4015273	+	566	119960871	-	AAur_3661	-	putative sulfate transporter family protein
3516	 59.55	-1	4015485..4015751	+	88	119963647	-	AAur_3662	-	hypothetical protein
3517	 63.02	0	4015748..4016158	+	136	119963812	-	AAur_3663	-	hypothetical protein
3518	 63.52	0	4016159..4017367	+	402	119963210	metB	AAur_3664	-	O-succinylhomoserine sulfhydrylase
3519	 64.87	0	4017378..4017989	+	203	119961610	-	AAur_3666	-	putative integral membrane protein
3520	 64.78	0	4017986..4019260	-	424	119960722	-	AAur_3665	-	carboxylate-amine ligase
3521	 61.47	0	4019365..4020768	-	467	119963938	-	AAur_3667	-	putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3522	 64.38	0	4021093..4021791	-	232	119961304	-	AAur_3668	-	putative iron-chelator utilization protein
3523	 65.68	+1	4021929..4024064	+	711	119962606	-	AAur_3669	-	putative penicillin amidase
3524	 63.50	0	4024127..4024726	+	199	119961671	-	AAur_3671	-	putative acetyltransferase
3525	 64.40	0	4024723..4025517	-	264	119963083	-	AAur_3670	-	putative cobalt transport protein
3526	 66.85	+1	4025514..4027106	-	530	119962330	-	AAur_3672	-	putative ABC transporter, ATP-binding protein
3527	 63.45	0	4027106..4027726	-	206	119961354	-	AAur_3673	-	putative integral membrane protein
3528	 64.06	0	4028455..4029144	+	229	119960864	-	AAur_3674	-	NUDIX family hydrolase
3529	 57.47	-1	4029175..4029435	+	86	119963746	-	AAur_3675	-	hypothetical protein
3530	 63.61	0	4029495..4029887	-	130	119961280	-	AAur_3676	-	putative multisubunit Na+/H+ antiporter, MnhG subunit
3531	 57.71	-1	4029877..4030155	-	92	119963244	-	AAur_3677	-	hypothetical protein
3532	 60.67	0	4030152..4030718	-	188	119962611	-	AAur_3678	-	putative monovalent cation/H+ antiporter subunit E
3533	 61.35	0	4030715..4032313	-	532	119964166	-	AAur_3679	-	putative monovalent cation/H+ antiporter subunit D
3534	 60.08	0	4032310..4032810	-	166	119963046	-	AAur_3680	-	putative multisubunit Na+/H+ antiporter, MnhC subunit
3535	 63.09	0	4032807..4035824	-	1005	119962588	-	AAur_3681	-	putative monovalent cation/H+ antiporter subunit A
3536	 62.32	0	4036027..4037430	+	467	119960527	-	AAur_3682	-	major facilitator transporter
3537	 61.70	0	4037495..4037977	+	160	119961077	-	AAur_3683	-	TrkA domain-containing protein
3538	 62.25	0	4037983..4039182	+	399	119961654	-	AAur_3684	-	putative Sodium/hydrogen exchanger family protein
3539	 62.92	0	4039262..4040248	-	328	119963707	-	AAur_3685	-	hypothetical protein
3540	 60.07	0	4040531..4041106	-	191	119964288	dcd	AAur_3686	-	deoxycytidine triphosphate deaminase
3541	 62.17	0	4042032..4043210	+	392	119960784	-	AAur_3687	-	FG-GAP repeat-containing protein
3542	 61.59	0	4043410..4043901	-	163	119961349	-	AAur_3688	-	hypothetical protein
3543	 63.83	0	4044068..4045582	+	504	119961539	-	AAur_3689	-	putative D-alanyl-D-alanine carboxypeptidase family protein
3544	 62.12	0	4045895..4046356	+	153	119962737	-	AAur_3691	-	hypothetical protein
3545	 55.56	-2	4046451..4046585	+	44	119963160	-	AAur_3692	-	hypothetical protein
3546	 64.34	0	4046582..4047739	+	385	119964031	-	AAur_3693	-	putative alanine dehydrogenase
3547	 64.21	0	4047790..4049175	-	461	119961363	-	AAur_3694	-	putative transmembrane efflux protein (MFS)
3548	 64.09	0	4049342..4050196	+	284	119961837	-	AAur_3695	-	LysR family transcriptional regulator
3549	 61.20	0	4050337..4050903	+	188	119961371	-	AAur_3696	-	acetyltransferase, GNAT family protein
3550	 64.21	0	4051121..4051894	+	257	119961547	-	AAur_3698	-	AP endonuclease family 2 protein
3551	 64.41	0	4051891..4052643	-	250	119960577	-	AAur_3697	-	putative lipase/esterase
3552	 63.97	0	4052640..4055051	-	803	119964020	-	AAur_3699	-	transcriptional regulator
3553	 65.35	+1	4055042..4056256	+	404	119962796	-	AAur_3700	-	putative protein of unknown function (DUF993)
3554	 64.89	0	4056253..4057095	+	280	119961650	-	AAur_3701	-	putative sugar phosphate isomerase/epimerase
3555	 60.23	0	4057485..4057655	+	56	119964294	-	AAur_3702	-	hypothetical protein
3556	 59.52	-1	4057790..4057999	-	69	119962715	-	AAur_3703	-	hypothetical protein
3557	 59.54	-1	4058020..4059099	-	359	119961246	-	AAur_3704	-	YihY family protein
3558	 64.61	0	4059280..4060545	-	421	119960621	-	AAur_3705	-	xylose repressor
3559	 64.14	0	4060627..4061814	+	395	119964059	xylA	AAur_3706	-	xylose isomerase
3560	 65.27	+1	4061913..4063343	+	476	119960658	xylB	AAur_3707	-	xylulokinase
3561	 64.52	0	4063374..4064396	+	340	119964187	-	AAur_3708	-	LacI family transcription regulator
3562	 63.21	0	4064553..4066289	+	578	119962686	araB	AAur_3709	-	ribulokinase
3563	 63.28	0	4066286..4066993	+	235	119962119	araD	AAur_3710	-	L-ribulose-5-phosphate 4-epimerase
3564	 63.80	0	4067068..4068603	+	511	119961215	araA	AAur_3711	-	L-arabinose isomerase
3565	 66.78	+1	4068600..4069496	+	298	119961926	-	AAur_3712	-	putative aldose-1-epimerase
3566	 63.03	0	4069557..4070573	-	338	119960712	-	AAur_3713	-	LacI family transcription regulator
3567	 60.00	0	4070700..4071104	+	134	119964068	-	AAur_3714	-	L-rhamnose 1-epimerase
3568	 63.58	0	4071101..4072267	+	388	119963873	rhaI	AAur_3715	-	L-rhamnose isomerase
3569	 65.44	+1	4072272..4074311	+	679	119963800	rhaD	AAur_3716	-	short chain dehydrogenase
3570	 65.78	+1	4074368..4075837	+	489	119962923	rhaB	AAur_3717	-	rhamnulokinase
3571	 58.42	-1	4075925..4076470	+	181	119963320	-	AAur_3718	-	helix-turn-helix domain-containing protein
3572	 58.33	-1	4076536..4076871	+	111	119961511	-	AAur_3719	-	hypothetical protein
3573	 62.96	0	4076951..4077382	+	143	119962044	panD	AAur_3720	-	aspartate 1-decarboxylase
3574	 62.03	0	4077545..4078471	+	308	119960681	-	AAur_3721	-	putative integral membrane permease
3575	 63.78	0	4078479..4081115	-	878	119960716	otsB	AAur_3722	-	trehalose-phosphatase
3576	 64.65	0	4081212..4082201	-	329	119963166	-	AAur_3723	-	putative luciferase-like monooxygenase
3577	 64.35	0	4082480..4083472	+	330	119962345	-	AAur_3724	-	putative ABC transporter, solute binding protein
3578	 65.05	0	4083576..4084505	-	309	119960840	-	AAur_3725	-	threonine dehydratase
3579	 63.07	0	4084498..4085025	+	175	119962442	-	AAur_3726	-	acetyltransferase, GNAT family protein
3580	 63.27	0	4085098..4086303	+	401	119964249	-	AAur_3727	-	FG-GAP repeat-containing protein
3581	 67.28	+1	4086318..4086479	-	53	119963692	-	AAur_3728	-	hypothetical protein
3582	 64.51	0	4086476..4087822	-	448	119963949	-	AAur_3729	-	putative monooxygenase
3583	 66.39	+1	4087832..4088899	-	355	119963470	-	AAur_3730	-	putative monooxygenase
3584	 64.14	0	4088896..4089726	-	276	119964299	-	AAur_3731	-	putative protein of unknown function (DUF1684)
3585	 64.01	0	4089716..4090882	-	388	119963815	-	AAur_3732	-	putative luciferase-like monooxygenase
3586	 62.34	0	4090879..4091871	-	330	119964102	-	AAur_3733	-	putative ABC transporter, solute binding protein
3587	 61.46	0	4091881..4092648	-	255	119963549	-	AAur_3734	-	putative amino acid ABC transporter, ATP-binding protein
3588	 62.53	0	4092801..4093766	-	321	119960912	-	AAur_3735	-	amino acid ABC transporter permease
3589	 67.69	+1	4094054..4096012	+	652	119963302	-	AAur_3736	-	hypothetical protein
3590	 64.10	0	4096043..4096588	+	181	119962598	-	AAur_3737	-	acetyltransferase, GNAT family protein
3591	 63.65	0	4096592..4098316	+	574	119963698	-	AAur_3738	-	putative ATP-binding protein
3592	 62.08	0	4098567..4099460	+	297	119960763	-	AAur_3739	-	hypothetical protein
3593	 60.95	0	4099561..4100400	-	279	119964386	-	AAur_3740	-	hypothetical protein
3594	 64.74	0	4100565..4102538	-	657	119961614	-	AAur_3741	-	NHL repeat-containing protein
3595	 63.74	0	4102538..4104793	-	751	119962766	-	AAur_3742	-	copper resistance protein D family
3596	 61.11	0	4104924..4105211	-	95	119962186	hup	AAur_3743	-	DNA-binding protein HU
3597	 63.12	0	4105441..4106004	-	187	119962572	-	AAur_3744	-	putative ribosomal-protein-alanine acetyltransferase
3598	 63.89	0	4106208..4107179	+	323	119960620	-	AAur_3745	-	hypothetical protein
3599	 60.66	0	4113223..4114104	-	293	119961963	-	AAur_3749	-	putative epoxide hydrolase
3600	 62.92	0	4114226..4116148	+	640	119962975	-	AAur_3750	-	putative afsR/dnrI/redD regulatory family protein
3601	 61.11	0	4122755..4123060	-	101	119963863	rpsN	AAur_3754	-	30S ribosomal protein S14
3602	 55.95	-2	4123065..4123232	-	55	119964323	rpmG	AAur_3755	-	50S ribosomal protein L33
3603	 59.92	0	4123232..4123468	-	78	119964156	rpmB	AAur_3756	-	50S ribosomal protein L28
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.