IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3443	 61.41	0	3933603..3934535	+	310	119962136	-	AAur_3584	-	putative transketolase subunit B
3444	 68.72	+2	3934553..3934942	+	129	119962699	-	AAur_3585	-	hypothetical protein
3445	 61.07	0	3934971..3935738	+	255	119963696	-	AAur_3586	-	short chain dehydrogenase/reductase family oxidoreductase
3446	 65.71	+1	3935804..3936745	-	313	119964248	-	AAur_3587	-	putative alcohol dehydrogenase
3447	 59.60	-1	3936894..3938195	-	433	119960815	kgtP	AAur_3588	-	alpha-ketoglutarate permease
3448	 65.89	+1	3938451..3939227	+	258	119962511	-	AAur_3589	-	putative serine 3-dehydrogenase
3449	 65.01	0	3939309..3939731	-	140	119962567	hspR	AAur_3590	-	heat shock regulator protein HspR
3450	 62.59	0	3941562..3943427	-	621	119962235	dnaK	AAur_3593	-	molecular chaperone DnaK
3451	 65.59	+1	3943681..3944238	+	185	119961087	-	AAur_3595	-	hypothetical protein
3452	 61.57	0	3944213..3944977	-	254	119961681	-	AAur_3594	-	putative uncharacterized integral membrane protein
3453	 64.52	0	3945105..3945896	-	263	119960523	-	AAur_3596	-	hypothetical protein
3454	 66.99	+1	3946800..3947738	+	312	119961347	-	AAur_3598	-	putative NAD dependent epimerase/dehydratase family protein
3455	 61.84	0	3947759..3949621	+	620	119962510	-	AAur_3599	-	transcriptional regulator
3456	 62.35	0	3949622..3950455	-	277	119961915	-	AAur_3600	-	putative hydrolase, alpha/beta fold family protein
3457	 64.50	0	3950569..3951075	+	168	119963124	-	AAur_3601	-	putative integral membrane protein
3458	 59.69	-1	3951090..3951548	-	152	119962609	-	AAur_3602	-	hypothetical protein
3459	 63.74	0	3952094..3954523	+	809	119963822	-	AAur_3604	-	cation-transporting ATPase E1-E2 family
3460	 62.15	0	3954505..3954858	-	117	119963780	-	AAur_3603	-	putative integral membrane protein
3461	 63.69	0	3955049..3956629	+	526	119960928	-	AAur_3605	-	alkaline phosphatase family protein
3462	 64.70	0	3956707..3958233	-	508	119964417	betA	AAur_3606	-	choline dehydrogenase
3463	 62.75	0	3958416..3958721	-	101	119963830	-	AAur_3607	-	hypothetical protein
3464	 63.49	0	3958793..3959485	+	230	119963706	-	AAur_3608	-	hypothetical protein
3465	 62.93	0	3959529..3960812	+	427	119961430	-	AAur_3609	-	putative phage tail sheath family protein
3466	 61.46	0	3960814..3961293	+	159	119962408	-	AAur_3610	-	hypothetical protein
3467	 66.32	+1	3961533..3962981	+	482	119961830	-	AAur_3611	-	hypothetical protein
3468	 65.55	+1	3962978..3964498	+	506	119962814	-	AAur_3612	-	putative phage-related protein
3469	 61.65	0	3964537..3964875	+	112	119961213	-	AAur_3613	-	hypothetical protein
3470	 67.13	+1	3964889..3965323	+	144	119961210	-	AAur_3614	-	putative phage-related protein
3471	 66.48	+1	3965320..3967947	+	875	119964424	-	AAur_3615	-	putative phage-related protein
3472	 64.61	0	3967940..3968473	+	177	119962953	-	AAur_3616	-	phage tail domain-containing protein
3473	 63.64	0	3968997..3969920	+	307	119960662	-	AAur_3617	-	PASTA domain-containing protein
3474	 60.82	0	3969958..3971223	+	421	119961846	-	AAur_3618	-	aminotransferase AlaT
3475	 58.96	-1	3971307..3972020	+	237	119962295	-	AAur_3619	-	hypothetical protein
3476	 61.01	0	3972017..3973342	+	441	119961895	-	AAur_3620	-	surface protein
3477	 62.24	0	3973346..3974158	-	270	119964231	-	AAur_3621	-	putative integral membrane protein
3478	 68.49	+2	3974310..3974747	-	145	119963583	-	AAur_3622	-	hypothetical protein
3479	 62.94	0	3976872..3977462	+	196	119962482	-	AAur_3624	-	TetR family transcriptional regulator
3480	 64.33	0	3977463..3978104	-	213	119962273	-	AAur_3625	-	LysE family translocator protein
3481	 67.09	+1	3978266..3979678	+	470	119962801	maoB	AAur_3626	-	phenylacetaldehyde dehydrogenase
3482	 61.38	0	3979877..3980671	+	264	119962546	-	AAur_3627	-	prephenate dehydratase
3483	 65.80	+1	3980672..3982051	-	459	119964280	-	AAur_3628	-	FAD dependent oxidoreductase domain-containing protein
3484	 60.94	0	3982081..3983058	-	325	119963722	trxB	AAur_3629	-	thioredoxin-disulfide reductase
3485	 62.65	0	3983083..3983505	-	140	119960751	arsC	AAur_3630	-	arsenate reductase
3486	 63.73	0	3983642..3984016	-	124	119962250	-	AAur_3631	-	putative arsenate reductase
3487	 61.84	0	3984273..3985100	+	275	119962000	-	AAur_3632	-	MIP family protein
3488	 61.01	0	3985131..3985961	+	276	119963414	-	AAur_3633	-	putative integral membrane protein
3489	 61.90	0	3986073..3986450	+	125	119961752	-	AAur_3634	-	ArsR family transcriptional regulator
3490	 62.35	0	3986447..3986956	+	169	119960647	-	AAur_3635	-	putative phosphinothricin N-acetyltransferase
3491	 63.40	0	3986960..3989134	-	724	119964383	-	AAur_3636	-	MMPL family protein
3492	 66.48	+1	3989301..3989837	+	178	119963801	-	AAur_3637	-	MarR family transcriptional regulator
3493	 65.32	+1	3989867..3990682	+	271	119963499	-	AAur_3638	-	methyltransferase
3494	 57.07	-1	3990783..3991157	+	124	119963112	-	AAur_3639	-	DGPF domain-containing protein
3495	 64.63	0	3991203..3992381	+	392	119962308	-	AAur_3640	-	putative RNA polymerase sigma (70) factor
3496	 63.41	0	3992400..3993383	+	327	119961415	-	AAur_3641	-	aldo/keto reductase family oxidoreductase
3497	 64.43	0	3993430..3994503	-	357	119963623	-	AAur_3642	-	DNA polymerase IV
3498	 58.37	-1	3994670..3995296	+	208	119963739	-	AAur_3643	-	putative homoserine/homoserine lactone efflux protein
3499	 62.18	0	3995360..3995716	+	118	119963033	-	AAur_3645	-	hypothetical protein
3500	 65.90	+1	3995709..3996752	-	347	119962597	-	AAur_3644	-	LacI family transcriptional regulator
3501	 62.62	0	3996942..3997955	+	337	119962444	-	AAur_3646	-	putative inosine-uridine preferring nucleoside hydrolase (IunH)
3502	 63.62	0	3997955..3999397	+	480	119963688	-	AAur_3647	-	putative transmembrane efflux protein (MFS)
3503	 67.19	+1	3999394..4000350	+	318	119963140	rbsK	AAur_3648	-	ribokinase
3504	 68.55	+2	4000429..4000746	-	105	119962678	-	AAur_3649	-	hypothetical protein
3505	 62.39	0	4001561..4002121	+	186	119963981	-	AAur_3651	-	low molecular weight phosphotyrosine protein phosphatase
3506	 66.32	+1	4002118..4004163	+	681	119963437	pabB	AAur_3652	-	para-aminobenzoate synthase, component I
3507	 59.39	-1	4004168..4005568	-	466	119962100	-	AAur_3653	-	cardiolipin synthetase
3508	 64.01	0	4005728..4006669	+	313	119961089	-	AAur_3654	-	4-amino-4-deoxychorismate lyase
3509	 62.27	0	4006925..4008379	+	484	119960646	-	AAur_3655	-	putative amino acid permease
3510	 57.35	-1	4008663..4009145	-	160	119964251	-	AAur_3656	-	4-carboxymuconolactone decarboxylase domain-containing protein
3511	 56.25	-2	4009155..4009298	-	47	119963856	-	AAur_3657	-	hypothetical protein
3512	 66.29	+1	4009455..4010528	-	357	119964308	-	AAur_3658	-	pyridoxal-phosphate dependent enzyme
3513	 66.35	+1	4010522..4012090	-	522	119963464	hutH	AAur_3659	-	histidine ammonia-lyase
3514	 61.78	0	4012090..4013418	-	442	119962477	-	AAur_3660	-	putative dibenzothiophene desulfurization enzyme
3515	 64.14	0	4013573..4015273	+	566	119960871	-	AAur_3661	-	putative sulfate transporter family protein
3516	 59.55	-1	4015485..4015751	+	88	119963647	-	AAur_3662	-	hypothetical protein
3517	 63.02	0	4015748..4016158	+	136	119963812	-	AAur_3663	-	hypothetical protein
3518	 63.52	0	4016159..4017367	+	402	119963210	metB	AAur_3664	-	O-succinylhomoserine sulfhydrylase
3519	 64.87	0	4017378..4017989	+	203	119961610	-	AAur_3666	-	putative integral membrane protein
3520	 64.78	0	4017986..4019260	-	424	119960722	-	AAur_3665	-	carboxylate-amine ligase
3521	 61.47	0	4019365..4020768	-	467	119963938	-	AAur_3667	-	putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3522	 64.38	0	4021093..4021791	-	232	119961304	-	AAur_3668	-	putative iron-chelator utilization protein
3523	 65.68	+1	4021929..4024064	+	711	119962606	-	AAur_3669	-	putative penicillin amidase
3524	 63.50	0	4024127..4024726	+	199	119961671	-	AAur_3671	-	putative acetyltransferase
3525	 64.40	0	4024723..4025517	-	264	119963083	-	AAur_3670	-	putative cobalt transport protein
3526	 66.85	+1	4025514..4027106	-	530	119962330	-	AAur_3672	-	putative ABC transporter, ATP-binding protein
3527	 63.45	0	4027106..4027726	-	206	119961354	-	AAur_3673	-	putative integral membrane protein
3528	 64.06	0	4028455..4029144	+	229	119960864	-	AAur_3674	-	NUDIX family hydrolase
3529	 57.47	-1	4029175..4029435	+	86	119963746	-	AAur_3675	-	hypothetical protein
3530	 63.61	0	4029495..4029887	-	130	119961280	-	AAur_3676	-	putative multisubunit Na+/H+ antiporter, MnhG subunit
3531	 57.71	-1	4029877..4030155	-	92	119963244	-	AAur_3677	-	hypothetical protein
3532	 60.67	0	4030152..4030718	-	188	119962611	-	AAur_3678	-	putative monovalent cation/H+ antiporter subunit E
3533	 61.35	0	4030715..4032313	-	532	119964166	-	AAur_3679	-	putative monovalent cation/H+ antiporter subunit D
3534	 60.08	0	4032310..4032810	-	166	119963046	-	AAur_3680	-	putative multisubunit Na+/H+ antiporter, MnhC subunit
3535	 63.09	0	4032807..4035824	-	1005	119962588	-	AAur_3681	-	putative monovalent cation/H+ antiporter subunit A
3536	 62.32	0	4036027..4037430	+	467	119960527	-	AAur_3682	-	major facilitator transporter
3537	 61.70	0	4037495..4037977	+	160	119961077	-	AAur_3683	-	TrkA domain-containing protein
3538	 62.25	0	4037983..4039182	+	399	119961654	-	AAur_3684	-	putative Sodium/hydrogen exchanger family protein
3539	 62.92	0	4039262..4040248	-	328	119963707	-	AAur_3685	-	hypothetical protein
3540	 60.07	0	4040531..4041106	-	191	119964288	dcd	AAur_3686	-	deoxycytidine triphosphate deaminase
3541	 62.17	0	4042032..4043210	+	392	119960784	-	AAur_3687	-	FG-GAP repeat-containing protein
3542	 61.59	0	4043410..4043901	-	163	119961349	-	AAur_3688	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.