IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3390	 63.95	0	3879817..3880920	+	367	119963715	-	AAur_3530	-	hypothetical protein
3391	 63.58	0	3880930..3883587	-	885	119961094	-	AAur_3531	-	ClpA/ClpB family protein
3392	 60.52	0	3883736..3884353	+	205	119962562	-	AAur_3532	-	pyridoxamine 5'-phosphate oxidase family protein
3393	 66.85	+1	3884363..3885436	-	357	119963988	-	AAur_3533	-	molybdate ABC transporter, ATP-binding protein
3394	 66.26	+1	3885433..3886173	-	246	119964054	modB	AAur_3534	-	molybdate ABC transporter, permease protein
3395	 62.98	0	3886256..3887068	-	270	119962988	modA	AAur_3535	-	molybdate ABC transporter
3396	 63.02	0	3887065..3887475	-	136	119960543	-	AAur_3536	-	molybdenum-pterin binding domain-containing protein
3397	 65.17	+1	3887679..3889013	+	444	119961665	-	AAur_3537	-	putative oxidoreductase, FAD-binding
3398	 64.50	0	3889139..3890014	+	291	119961928	-	AAur_3538	-	hypothetical protein
3399	 62.81	0	3890110..3891768	+	552	119962338	-	AAur_3540	-	BNR/Asp-box repeat-containing protein
3400	 58.96	-1	3891765..3892166	-	133	119962534	-	AAur_3539	-	hypothetical protein
3401	 59.82	0	3892268..3892720	-	150	119963475	-	AAur_3541	-	hypothetical protein
3402	 66.50	+1	3892978..3893583	-	201	119961194	trpF	AAur_3542	-	N-(5'phosphoribosyl)anthranilate isomerase
3403	 64.46	0	3893738..3894325	+	195	119963816	-	AAur_3543	-	hypothetical protein
3404	 62.54	0	3894458..3894772	+	104	119962151	-	AAur_3544	-	putative multidrug resistance protein (sugE)
3405	 58.54	-1	3894775..3895143	+	122	119960673	-	AAur_3545	-	putative multidrug resistance protein (sugE)
3406	 63.18	0	3895348..3896352	+	334	119963007	-	AAur_3546	-	aldo/keto reductase family oxidoreductase
3407	 62.52	0	3896357..3897007	+	216	119963449	-	AAur_3547	-	metallo-beta-lactamase superfamily protein
3408	 66.90	+1	3897077..3898807	-	576	119963413	-	AAur_3548	-	putative ATP-dependent RNA helicase
3409	 66.74	+1	3899222..3900613	-	463	119963073	-	AAur_3549	-	major facilitator transporter
3410	 62.86	0	3900612..3901136	+	174	119961624	soxR	AAur_3550	-	redox-sensitive transcriptional activator SoxR
3411	 64.40	0	3901146..3901895	+	249	119964257	-	AAur_3552	-	methyltransferase small subunit
3412	 62.83	0	3901892..3902986	-	364	119962688	-	AAur_3551	-	putative transcriptional regulatory protein
3413	 63.96	0	3903071..3904288	+	405	119961943	-	AAur_3553	-	putative metal-dependent amidase/aminoacylase/carboxypeptidase
3414	 63.42	0	3904324..3905616	+	430	119960767	-	AAur_3554	-	major facilitator transporter
3415	 65.40	+1	3905693..3906955	-	420	119961319	-	AAur_3555	-	putative cyanate transporter
3416	 59.42	-1	3907107..3907520	+	137	119962230	-	AAur_3556	-	hypothetical protein
3417	 65.12	0	3907598..3908503	+	301	119960727	trmB	AAur_3557	-	tRNA (guanine-N(7)-)-methyltransferase
3418	 61.83	0	3908525..3908917	+	130	119962780	-	AAur_3558	-	hypothetical protein
3419	 63.84	0	3908917..3909411	+	164	119962006	-	AAur_3559	-	hypothetical protein
3420	 63.41	0	3909415..3910089	-	224	119961570	-	AAur_3560	-	hypothetical protein
3421	 60.82	0	3910086..3910598	-	170	119960693	-	AAur_3561	-	RNA polymerase ECF-subfamily sigma factor
3422	 62.30	0	3910729..3911277	+	182	119962348	-	AAur_3562	-	putative lipoprotein
3423	 56.86	-2	3911367..3912314	-	315	119961598	-	AAur_3563	-	hypothetical protein
3424	 62.62	0	3912366..3913082	+	238	119961395	-	AAur_3564	-	hypothetical protein
3425	 63.60	0	3913426..3914403	-	325	119964053	-	AAur_3565	-	putative ABC transporter, ATP-binding protein
3426	 64.76	0	3914405..3915244	-	279	119962754	-	AAur_3566	-	hypothetical protein
3427	 63.40	0	3915237..3916031	-	264	119962104	-	AAur_3567	-	hypothetical protein
3428	 60.17	0	3916051..3917112	+	353	119961183	-	AAur_3568	-	hypothetical protein
3429	 63.17	0	3917152..3920607	+	1151	119964500	-	AAur_3569	-	helicase/SNF2 family domain-containing protein
3430	 65.81	+1	3921078..3922250	-	390	119962334	-	AAur_3570	-	putative transmembrane efflux protein (MFS)
3431	 60.51	0	3922247..3922912	-	221	119961706	-	AAur_3571	-	GntR family transcriptional regulator
3432	 61.08	0	3922900..3923991	+	363	119961448	-	AAur_3572	-	hypothetical protein
3433	 66.14	+1	3924020..3925738	-	572	119964064	-	AAur_3573	-	amidase
3434	 67.23	+1	3925738..3926796	-	352	119962775	-	AAur_3574	-	putative peptidylarginine deiminase
3435	 65.44	+1	3927570..3928220	+	216	119963393	-	AAur_3576	-	hypothetical protein
3436	 63.36	0	3928411..3928833	+	140	119962299	-	AAur_3577	-	hypothetical protein
3437	 61.39	0	3928860..3929162	-	100	119960924	-	AAur_3578	-	putative integral membrane protein
3438	 61.48	0	3929319..3929858	+	179	119961456	-	AAur_3580	-	hypothetical protein
3439	 61.81	0	3929855..3930595	-	246	119963552	-	AAur_3579	-	IclR family transcriptional regulator
3440	 63.60	0	3930595..3931410	-	271	119964107	-	AAur_3581	-	IclR family transcriptional regulator
3441	 63.51	0	3931585..3932631	+	348	119964267	-	AAur_3582	-	putative alcohol dehydrogenase
3442	 60.85	0	3932713..3933606	+	297	119961502	-	AAur_3583	-	putative transketolase subunit A
3443	 61.41	0	3933603..3934535	+	310	119962136	-	AAur_3584	-	putative transketolase subunit B
3444	 68.72	+2	3934553..3934942	+	129	119962699	-	AAur_3585	-	hypothetical protein
3445	 61.07	0	3934971..3935738	+	255	119963696	-	AAur_3586	-	short chain dehydrogenase/reductase family oxidoreductase
3446	 65.71	+1	3935804..3936745	-	313	119964248	-	AAur_3587	-	putative alcohol dehydrogenase
3447	 59.60	-1	3936894..3938195	-	433	119960815	kgtP	AAur_3588	-	alpha-ketoglutarate permease
3448	 65.89	+1	3938451..3939227	+	258	119962511	-	AAur_3589	-	putative serine 3-dehydrogenase
3449	 65.01	0	3939309..3939731	-	140	119962567	hspR	AAur_3590	-	heat shock regulator protein HspR
3450	 62.59	0	3941562..3943427	-	621	119962235	dnaK	AAur_3593	-	molecular chaperone DnaK
3451	 65.59	+1	3943681..3944238	+	185	119961087	-	AAur_3595	-	hypothetical protein
3452	 61.57	0	3944213..3944977	-	254	119961681	-	AAur_3594	-	putative uncharacterized integral membrane protein
3453	 64.52	0	3945105..3945896	-	263	119960523	-	AAur_3596	-	hypothetical protein
3454	 66.99	+1	3946800..3947738	+	312	119961347	-	AAur_3598	-	putative NAD dependent epimerase/dehydratase family protein
3455	 61.84	0	3947759..3949621	+	620	119962510	-	AAur_3599	-	transcriptional regulator
3456	 62.35	0	3949622..3950455	-	277	119961915	-	AAur_3600	-	putative hydrolase, alpha/beta fold family protein
3457	 64.50	0	3950569..3951075	+	168	119963124	-	AAur_3601	-	putative integral membrane protein
3458	 59.69	-1	3951090..3951548	-	152	119962609	-	AAur_3602	-	hypothetical protein
3459	 63.74	0	3952094..3954523	+	809	119963822	-	AAur_3604	-	cation-transporting ATPase E1-E2 family
3460	 62.15	0	3954505..3954858	-	117	119963780	-	AAur_3603	-	putative integral membrane protein
3461	 63.69	0	3955049..3956629	+	526	119960928	-	AAur_3605	-	alkaline phosphatase family protein
3462	 64.70	0	3956707..3958233	-	508	119964417	betA	AAur_3606	-	choline dehydrogenase
3463	 62.75	0	3958416..3958721	-	101	119963830	-	AAur_3607	-	hypothetical protein
3464	 63.49	0	3958793..3959485	+	230	119963706	-	AAur_3608	-	hypothetical protein
3465	 62.93	0	3959529..3960812	+	427	119961430	-	AAur_3609	-	putative phage tail sheath family protein
3466	 61.46	0	3960814..3961293	+	159	119962408	-	AAur_3610	-	hypothetical protein
3467	 66.32	+1	3961533..3962981	+	482	119961830	-	AAur_3611	-	hypothetical protein
3468	 65.55	+1	3962978..3964498	+	506	119962814	-	AAur_3612	-	putative phage-related protein
3469	 61.65	0	3964537..3964875	+	112	119961213	-	AAur_3613	-	hypothetical protein
3470	 67.13	+1	3964889..3965323	+	144	119961210	-	AAur_3614	-	putative phage-related protein
3471	 66.48	+1	3965320..3967947	+	875	119964424	-	AAur_3615	-	putative phage-related protein
3472	 64.61	0	3967940..3968473	+	177	119962953	-	AAur_3616	-	phage tail domain-containing protein
3473	 63.64	0	3968997..3969920	+	307	119960662	-	AAur_3617	-	PASTA domain-containing protein
3474	 60.82	0	3969958..3971223	+	421	119961846	-	AAur_3618	-	aminotransferase AlaT
3475	 58.96	-1	3971307..3972020	+	237	119962295	-	AAur_3619	-	hypothetical protein
3476	 61.01	0	3972017..3973342	+	441	119961895	-	AAur_3620	-	surface protein
3477	 62.24	0	3973346..3974158	-	270	119964231	-	AAur_3621	-	putative integral membrane protein
3478	 68.49	+2	3974310..3974747	-	145	119963583	-	AAur_3622	-	hypothetical protein
3479	 62.94	0	3976872..3977462	+	196	119962482	-	AAur_3624	-	TetR family transcriptional regulator
3480	 64.33	0	3977463..3978104	-	213	119962273	-	AAur_3625	-	LysE family translocator protein
3481	 67.09	+1	3978266..3979678	+	470	119962801	maoB	AAur_3626	-	phenylacetaldehyde dehydrogenase
3482	 61.38	0	3979877..3980671	+	264	119962546	-	AAur_3627	-	prephenate dehydratase
3483	 65.80	+1	3980672..3982051	-	459	119964280	-	AAur_3628	-	FAD dependent oxidoreductase domain-containing protein
3484	 60.94	0	3982081..3983058	-	325	119963722	trxB	AAur_3629	-	thioredoxin-disulfide reductase
3485	 62.65	0	3983083..3983505	-	140	119960751	arsC	AAur_3630	-	arsenate reductase
3486	 63.73	0	3983642..3984016	-	124	119962250	-	AAur_3631	-	putative arsenate reductase
3487	 61.84	0	3984273..3985100	+	275	119962000	-	AAur_3632	-	MIP family protein
3488	 61.01	0	3985131..3985961	+	276	119963414	-	AAur_3633	-	putative integral membrane protein
3489	 61.90	0	3986073..3986450	+	125	119961752	-	AAur_3634	-	ArsR family transcriptional regulator
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.