IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3312	 60.34	0	3803888..3804994	+	368	119961158	-	AAur_3452	-	glycosyl transferase domain-containing protein
3313	 61.29	0	3805270..3806646	-	458	119963946	-	AAur_3453	-	hypothetical protein
3314	 59.46	-1	3806939..3807382	+	147	119964306	-	AAur_3454	-	putative MutT/nudix family protein
3315	 66.02	+1	3807699..3808619	+	306	119963494	-	AAur_3455	-	hypothetical protein
3316	 56.28	-2	3808798..3809442	+	214	119963427	-	AAur_3456	-	hypothetical protein
3317	 66.03	+1	3809609..3809764	-	51	119963125	-	AAur_3457	-	hypothetical protein
3318	 62.96	0	3809879..3810607	-	242	119962973	-	AAur_3458	-	hydrolase, alpha/beta fold family protein
3319	 61.19	0	3810916..3811353	-	145	119962602	-	AAur_3459	-	hypothetical protein
3320	 65.27	+1	3811418..3811990	+	190	119963030	-	AAur_3460	-	hypothetical protein
3321	 59.09	-1	3812028..3812159	-	43	119961600	-	AAur_3461	-	hypothetical protein
3322	 63.10	0	3812256..3812759	+	167	119964350	-	AAur_3462	-	hypothetical protein
3323	 62.30	0	3812878..3814845	-	655	119960925	-	AAur_3463	-	putative ABC transporter, ATP-binding protein
3324	 64.13	0	3814842..3816575	-	577	119962012	-	AAur_3464	-	putative ABC transporter ATP-binding protein
3325	 62.09	0	3816658..3817335	-	225	119962283	-	AAur_3465	-	putative acyl carrier protein phosphodiesterase
3326	 61.63	0	3817461..3817877	+	138	119960825	-	AAur_3466	-	MarR family transcriptional regulator
3327	 61.29	0	3817921..3818757	+	278	119961660	-	AAur_3467	-	haloperoxidase
3328	 61.45	0	3818762..3820294	-	510	119964130	-	AAur_3468	-	putative adenylate cyclase family protein
3329	 62.28	0	3820440..3821054	-	204	119961438	-	AAur_3469	-	hypothetical protein
3330	 60.88	0	3821168..3821599	-	143	119961005	-	AAur_3470	-	hypothetical protein
3331	 56.25	-2	3821676..3821963	-	95	119961594	-	AAur_3471	-	hypothetical protein
3332	 53.80	-2	3822263..3822433	-	56	119962322	-	AAur_3472	-	hypothetical protein
3333	 64.18	0	3822653..3823417	-	254	119961976	-	AAur_3473	-	KdgR acetate operon repressor
3334	 63.63	0	3823670..3824887	+	405	119961738	-	AAur_3474	-	CAIB/BAIF family acyl-CoA thioesterase
3335	 64.47	0	3824884..3825702	+	272	119964228	-	AAur_3475	-	enoyl-CoA hydratase/isomerase family protein
3336	 62.89	0	3825804..3826385	+	193	119960496	-	AAur_3476	-	putative thymidylate kinase
3337	 60.31	0	3826480..3826935	+	151	119962541	-	AAur_3477	-	hypothetical protein
3338	 66.01	+1	3826955..3827716	-	253	119963089	-	AAur_3478	-	MutT/NUDIX family DNA hydrolase
3339	 63.33	0	3827794..3828813	+	339	119961975	-	AAur_3479	-	hypothetical protein
3340	 65.34	+1	3828823..3829725	+	300	119962915	-	AAur_3480	-	hypothetical protein
3341	 62.54	0	3829919..3830863	+	314	119961617	-	AAur_3481	-	putative integral membrane protein
3342	 62.11	0	3830970..3832811	+	613	119962073	ggt	AAur_3482	-	gamma-glutamyltransferase
3343	 59.01	-1	3832858..3833079	+	73	119963335	-	AAur_3483	-	hypothetical protein
3344	 59.51	-1	3833161..3833859	-	232	119963768	-	AAur_3484	-	putative integral membrane protein
3345	 57.60	-1	3833860..3834609	-	249	119962443	-	AAur_3485	-	hypothetical protein
3346	 62.17	0	3834606..3835316	-	236	119962553	-	AAur_3486	-	putative ABC transporter, ATP-binding protein
3347	 62.12	0	3835313..3837004	-	563	119964275	-	AAur_3487	-	putative zinc metallopeptidase family protein
3348	 63.77	0	3837001..3838242	-	413	119963729	-	AAur_3488	-	hypothetical protein
3349	 60.29	0	3838230..3839045	-	271	119961856	-	AAur_3489	-	hypothetical protein
3350	 57.63	-1	3839130..3839306	-	58	119960668	-	AAur_3490	-	hypothetical protein
3351	 56.22	-2	3839334..3839582	-	82	119962571	-	AAur_3491	-	hypothetical protein
3352	 64.38	0	3839628..3840851	-	407	119962590	-	AAur_3492	-	hypothetical protein
3353	 60.08	0	3840848..3842137	-	429	119962504	-	AAur_3493	-	aminotransferase class III protein
3354	 59.43	-1	3842137..3843159	-	340	119961933	-	AAur_3494	-	hypothetical protein
3355	 58.01	-1	3843391..3844464	+	357	119962161	-	AAur_3495	-	hypothetical protein
3356	 63.51	0	3844959..3845402	-	147	119960554	-	AAur_3496	-	hypothetical protein
3357	 60.67	0	3845467..3846216	-	249	119963942	-	AAur_3497	-	putative thuA-like protein
3358	 63.95	0	3846218..3847321	-	367	119963958	-	AAur_3498	-	oxidoreductase family protein
3359	 63.11	0	3847359..3848258	-	299	119963388	-	AAur_3499	-	putative ABC-type sugar transport system, permease component
3360	 65.50	+1	3848255..3849196	-	313	119962837	-	AAur_3500	-	putative sugar ABC transporter, permease protein
3361	 63.99	0	3849199..3850506	-	435	119963603	-	AAur_3501	-	extracellular solute-binding domain-containing protein
3362	 58.37	-1	3850705..3851403	-	232	119964124	-	AAur_3502	-	uridine kinase
3363	 62.06	0	3851493..3852491	-	332	119962685	-	AAur_3503	-	LacI family transcriptional regulator
3364	 62.52	0	3853484..3854014	+	176	119963340	-	AAur_3504	-	hypothetical protein
3365	 52.47	-2	3855148..3856584	-	478	119963147	-	AAur_3505	-	hypothetical protein
3366	 64.80	0	3857018..3857821	+	267	119961717	-	AAur_3506	-	putative hydroxypyruvate isomerase
3367	 65.42	+1	3857911..3858789	+	292	119962621	-	AAur_3507	-	2-hydroxy-3-oxopropionate reductase
3368	 62.89	0	3858915..3860690	+	591	119961481	gcl	AAur_3508	-	glyoxylate carboligase
3369	 65.55	+1	3860716..3861882	+	388	119960766	glxK	AAur_3509	-	glycerate kinase
3370	 66.67	+1	3861875..3863224	+	449	119962385	allB	AAur_3510	-	allantoinase
3371	 66.18	+1	3863235..3864062	+	275	119963572	-	AAur_3511	-	transcriptional regulator
3372	 63.89	0	3864160..3864627	+	155	119961376	bcp	AAur_3512	-	bacterioferritin comigratory protein (thioredoxin reductase)
3373	 65.24	+1	3864774..3865895	+	373	119962094	-	AAur_3513	-	two-component system response regulator
3374	 62.97	0	3865916..3867892	+	658	119960747	-	AAur_3514	-	glycosyl transferase, group 2 family protein
3375	 62.24	0	3867876..3868214	+	112	119961185	-	AAur_3515	-	putative anti-sigma factor antagonist
3376	 63.10	0	3868207..3868626	+	139	119961038	-	AAur_3516	-	hypothetical protein
3377	 61.85	0	3868829..3869389	+	186	119962282	-	AAur_3517	-	putative lipoprotein
3378	 64.84	0	3869576..3870670	-	364	119961953	-	AAur_3518	-	aminotransferase, class V protein
3379	 63.88	0	3870725..3871942	-	405	119963341	-	AAur_3519	-	major facilitator transporter
3380	 62.77	0	3872006..3872467	+	153	119963278	-	AAur_3520	-	putative transcriptional regulator protein
3381	 63.06	0	3872551..3873381	+	276	119964180	-	AAur_3521	-	PAP2 superfamily domain-containing protein
3382	 63.92	0	3873501..3874046	+	181	119960991	-	AAur_3522	-	putative OHCU decarboxylase
3383	 64.33	0	3874043..3874384	+	113	119960851	-	AAur_3523	-	putative transthyretin-like protein
3384	 63.23	0	3874431..3874808	+	125	119961779	-	AAur_3524	-	hypothetical protein
3385	 62.68	0	3874955..3876583	+	542	119963114	purF	AAur_3525	-	amidophosphoribosyltransferase
3386	 65.72	+1	3876676..3877728	+	350	119964519	purM	AAur_3526	-	phosphoribosylaminoimidazole synthetase
3387	 64.07	0	3877794..3878564	-	256	119962818	-	AAur_3527	-	putative glyoxalase family protein
3388	 60.41	0	3878561..3879343	-	260	119961667	-	AAur_3528	-	putative glyoxalase family protein
3389	 58.67	-1	3879529..3879753	-	74	119961401	-	AAur_3529	-	hypothetical protein
3390	 63.95	0	3879817..3880920	+	367	119963715	-	AAur_3530	-	hypothetical protein
3391	 63.58	0	3880930..3883587	-	885	119961094	-	AAur_3531	-	ClpA/ClpB family protein
3392	 60.52	0	3883736..3884353	+	205	119962562	-	AAur_3532	-	pyridoxamine 5'-phosphate oxidase family protein
3393	 66.85	+1	3884363..3885436	-	357	119963988	-	AAur_3533	-	molybdate ABC transporter, ATP-binding protein
3394	 66.26	+1	3885433..3886173	-	246	119964054	modB	AAur_3534	-	molybdate ABC transporter, permease protein
3395	 62.98	0	3886256..3887068	-	270	119962988	modA	AAur_3535	-	molybdate ABC transporter
3396	 63.02	0	3887065..3887475	-	136	119960543	-	AAur_3536	-	molybdenum-pterin binding domain-containing protein
3397	 65.17	+1	3887679..3889013	+	444	119961665	-	AAur_3537	-	putative oxidoreductase, FAD-binding
3398	 64.50	0	3889139..3890014	+	291	119961928	-	AAur_3538	-	hypothetical protein
3399	 62.81	0	3890110..3891768	+	552	119962338	-	AAur_3540	-	BNR/Asp-box repeat-containing protein
3400	 58.96	-1	3891765..3892166	-	133	119962534	-	AAur_3539	-	hypothetical protein
3401	 59.82	0	3892268..3892720	-	150	119963475	-	AAur_3541	-	hypothetical protein
3402	 66.50	+1	3892978..3893583	-	201	119961194	trpF	AAur_3542	-	N-(5'phosphoribosyl)anthranilate isomerase
3403	 64.46	0	3893738..3894325	+	195	119963816	-	AAur_3543	-	hypothetical protein
3404	 62.54	0	3894458..3894772	+	104	119962151	-	AAur_3544	-	putative multidrug resistance protein (sugE)
3405	 58.54	-1	3894775..3895143	+	122	119960673	-	AAur_3545	-	putative multidrug resistance protein (sugE)
3406	 63.18	0	3895348..3896352	+	334	119963007	-	AAur_3546	-	aldo/keto reductase family oxidoreductase
3407	 62.52	0	3896357..3897007	+	216	119963449	-	AAur_3547	-	metallo-beta-lactamase superfamily protein
3408	 66.90	+1	3897077..3898807	-	576	119963413	-	AAur_3548	-	putative ATP-dependent RNA helicase
3409	 66.74	+1	3899222..3900613	-	463	119963073	-	AAur_3549	-	major facilitator transporter
3410	 62.86	0	3900612..3901136	+	174	119961624	soxR	AAur_3550	-	redox-sensitive transcriptional activator SoxR
3411	 64.40	0	3901146..3901895	+	249	119964257	-	AAur_3552	-	methyltransferase small subunit
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.