IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3277	 63.50	0	3761494..3761967	+	157	119963554	-	AAur_3415	-	signal transduction histidine kinase domain-containing protein
3278	 61.64	0	3762075..3764264	+	729	119960894	-	AAur_3416	-	penicillin-binding protein
3279	 60.93	0	3764341..3765072	-	243	119961842	-	AAur_3417	-	glutamine amidotransferase
3280	 63.98	0	3765238..3766464	+	408	119960865	-	AAur_3418	-	major facilitator transporter
3281	 64.36	0	3766579..3767964	+	461	119964006	amt	AAur_3419	-	ammonium transporter
3282	 64.99	0	3768033..3768629	-	198	119963544	-	AAur_3420	-	hypothetical protein
3283	 64.65	0	3768867..3771149	-	760	119962931	-	AAur_3421	-	putative sulfate transporter family protein
3284	 68.25	+2	3771256..3771633	+	125	119962505	-	AAur_3422	-	FG-GAP repeat-containing protein
3285	 64.83	0	3771737..3772822	+	361	119963060	-	AAur_3423	-	hypothetical protein
3286	 65.42	+1	3772816..3774180	+	454	119963421	-	AAur_3424	-	hypothetical protein
3287	 65.88	+1	3774183..3774941	+	252	119961575	-	AAur_3425	-	glycosyl transferase, group 2 family protein
3288	 64.95	0	3774968..3775609	-	213	119961916	adk	AAur_3426	-	adenylate kinase
3289	 60.84	0	3775648..3776145	-	165	119964426	-	AAur_3427	-	hypothetical protein
3290	 59.78	0	3776142..3776504	-	120	119963558	-	AAur_3428	-	ArsR family transcriptional regulator
3291	 62.91	0	3776574..3777371	-	265	119961053	-	AAur_3429	-	SIS domain-containing protein
3292	 61.20	0	3777561..3778949	+	462	119960616	-	AAur_3430	-	major facilitator transporter
3293	 60.20	0	3778946..3779440	+	164	119962278	-	AAur_3431	-	hypothetical protein
3294	 65.13	0	3779442..3780674	+	410	119962895	-	AAur_3432	-	Xaa-Pro dipeptidase (prolidase)
3295	 62.34	0	3780881..3781573	+	230	119962412	-	AAur_3433	-	hypothetical protein
3296	 64.08	0	3781689..3783779	-	696	119960824	-	AAur_3434	-	FG-GAP repeat-containing protein
3297	 64.43	0	3783951..3785606	-	551	119962137	-	AAur_3435	-	putative peptide ABC transporter, ATP-binding protein
3298	 64.45	0	3785603..3786550	-	315	119962098	-	AAur_3436	-	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
3299	 61.69	0	3786561..3787505	-	314	119963020	-	AAur_3437	-	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
3300	 62.58	0	3787513..3789150	-	545	119962247	-	AAur_3438	-	putative ABC-type dipeptide/oligopeptide transport system
3301	 64.34	0	3789147..3790562	-	471	119960505	-	AAur_3439	-	putative monooxygenase
3302	 66.58	+1	3790612..3791763	-	383	119963032	-	AAur_3440	-	putative monooxygenase
3303	 67.33	+1	3793254..3793703	+	149	119960696	-	AAur_3443	-	rhodanese-like domain-containing protein
3304	 66.01	+1	3793667..3795199	-	510	119963420	-	AAur_3442	-	putative transmembrane efflux protein (MFS)
3305	 65.63	+1	3797183..3798343	-	386	119961911	-	AAur_3445	-	putative alkansulfonate monooxygenase
3306	 60.76	0	3798367..3799026	-	219	119962924	-	AAur_3446	-	putative ABC transporter permease protein
3307	 65.06	0	3799029..3800147	-	372	119961583	-	AAur_3447	-	putative ABC transporter, ATP-binding protein
3308	 60.23	0	3800369..3801253	+	294	119962157	-	AAur_3448	-	putative ABC-type transport system
3309	 63.19	0	3801313..3802662	+	449	119960760	-	AAur_3449	-	putative monooxygenase
3310	 67.03	+1	3802659..3803201	+	180	119962516	-	AAur_3450	-	acetyltransferase, GNAT family protein
3311	 55.38	-2	3803407..3803592	+	61	119962596	-	AAur_3451	-	hypothetical protein
3312	 60.34	0	3803888..3804994	+	368	119961158	-	AAur_3452	-	glycosyl transferase domain-containing protein
3313	 61.29	0	3805270..3806646	-	458	119963946	-	AAur_3453	-	hypothetical protein
3314	 59.46	-1	3806939..3807382	+	147	119964306	-	AAur_3454	-	putative MutT/nudix family protein
3315	 66.02	+1	3807699..3808619	+	306	119963494	-	AAur_3455	-	hypothetical protein
3316	 56.28	-2	3808798..3809442	+	214	119963427	-	AAur_3456	-	hypothetical protein
3317	 66.03	+1	3809609..3809764	-	51	119963125	-	AAur_3457	-	hypothetical protein
3318	 62.96	0	3809879..3810607	-	242	119962973	-	AAur_3458	-	hydrolase, alpha/beta fold family protein
3319	 61.19	0	3810916..3811353	-	145	119962602	-	AAur_3459	-	hypothetical protein
3320	 65.27	+1	3811418..3811990	+	190	119963030	-	AAur_3460	-	hypothetical protein
3321	 59.09	-1	3812028..3812159	-	43	119961600	-	AAur_3461	-	hypothetical protein
3322	 63.10	0	3812256..3812759	+	167	119964350	-	AAur_3462	-	hypothetical protein
3323	 62.30	0	3812878..3814845	-	655	119960925	-	AAur_3463	-	putative ABC transporter, ATP-binding protein
3324	 64.13	0	3814842..3816575	-	577	119962012	-	AAur_3464	-	putative ABC transporter ATP-binding protein
3325	 62.09	0	3816658..3817335	-	225	119962283	-	AAur_3465	-	putative acyl carrier protein phosphodiesterase
3326	 61.63	0	3817461..3817877	+	138	119960825	-	AAur_3466	-	MarR family transcriptional regulator
3327	 61.29	0	3817921..3818757	+	278	119961660	-	AAur_3467	-	haloperoxidase
3328	 61.45	0	3818762..3820294	-	510	119964130	-	AAur_3468	-	putative adenylate cyclase family protein
3329	 62.28	0	3820440..3821054	-	204	119961438	-	AAur_3469	-	hypothetical protein
3330	 60.88	0	3821168..3821599	-	143	119961005	-	AAur_3470	-	hypothetical protein
3331	 56.25	-2	3821676..3821963	-	95	119961594	-	AAur_3471	-	hypothetical protein
3332	 53.80	-2	3822263..3822433	-	56	119962322	-	AAur_3472	-	hypothetical protein
3333	 64.18	0	3822653..3823417	-	254	119961976	-	AAur_3473	-	KdgR acetate operon repressor
3334	 63.63	0	3823670..3824887	+	405	119961738	-	AAur_3474	-	CAIB/BAIF family acyl-CoA thioesterase
3335	 64.47	0	3824884..3825702	+	272	119964228	-	AAur_3475	-	enoyl-CoA hydratase/isomerase family protein
3336	 62.89	0	3825804..3826385	+	193	119960496	-	AAur_3476	-	putative thymidylate kinase
3337	 60.31	0	3826480..3826935	+	151	119962541	-	AAur_3477	-	hypothetical protein
3338	 66.01	+1	3826955..3827716	-	253	119963089	-	AAur_3478	-	MutT/NUDIX family DNA hydrolase
3339	 63.33	0	3827794..3828813	+	339	119961975	-	AAur_3479	-	hypothetical protein
3340	 65.34	+1	3828823..3829725	+	300	119962915	-	AAur_3480	-	hypothetical protein
3341	 62.54	0	3829919..3830863	+	314	119961617	-	AAur_3481	-	putative integral membrane protein
3342	 62.11	0	3830970..3832811	+	613	119962073	ggt	AAur_3482	-	gamma-glutamyltransferase
3343	 59.01	-1	3832858..3833079	+	73	119963335	-	AAur_3483	-	hypothetical protein
3344	 59.51	-1	3833161..3833859	-	232	119963768	-	AAur_3484	-	putative integral membrane protein
3345	 57.60	-1	3833860..3834609	-	249	119962443	-	AAur_3485	-	hypothetical protein
3346	 62.17	0	3834606..3835316	-	236	119962553	-	AAur_3486	-	putative ABC transporter, ATP-binding protein
3347	 62.12	0	3835313..3837004	-	563	119964275	-	AAur_3487	-	putative zinc metallopeptidase family protein
3348	 63.77	0	3837001..3838242	-	413	119963729	-	AAur_3488	-	hypothetical protein
3349	 60.29	0	3838230..3839045	-	271	119961856	-	AAur_3489	-	hypothetical protein
3350	 57.63	-1	3839130..3839306	-	58	119960668	-	AAur_3490	-	hypothetical protein
3351	 56.22	-2	3839334..3839582	-	82	119962571	-	AAur_3491	-	hypothetical protein
3352	 64.38	0	3839628..3840851	-	407	119962590	-	AAur_3492	-	hypothetical protein
3353	 60.08	0	3840848..3842137	-	429	119962504	-	AAur_3493	-	aminotransferase class III protein
3354	 59.43	-1	3842137..3843159	-	340	119961933	-	AAur_3494	-	hypothetical protein
3355	 58.01	-1	3843391..3844464	+	357	119962161	-	AAur_3495	-	hypothetical protein
3356	 63.51	0	3844959..3845402	-	147	119960554	-	AAur_3496	-	hypothetical protein
3357	 60.67	0	3845467..3846216	-	249	119963942	-	AAur_3497	-	putative thuA-like protein
3358	 63.95	0	3846218..3847321	-	367	119963958	-	AAur_3498	-	oxidoreductase family protein
3359	 63.11	0	3847359..3848258	-	299	119963388	-	AAur_3499	-	putative ABC-type sugar transport system, permease component
3360	 65.50	+1	3848255..3849196	-	313	119962837	-	AAur_3500	-	putative sugar ABC transporter, permease protein
3361	 63.99	0	3849199..3850506	-	435	119963603	-	AAur_3501	-	extracellular solute-binding domain-containing protein
3362	 58.37	-1	3850705..3851403	-	232	119964124	-	AAur_3502	-	uridine kinase
3363	 62.06	0	3851493..3852491	-	332	119962685	-	AAur_3503	-	LacI family transcriptional regulator
3364	 62.52	0	3853484..3854014	+	176	119963340	-	AAur_3504	-	hypothetical protein
3365	 52.47	-2	3855148..3856584	-	478	119963147	-	AAur_3505	-	hypothetical protein
3366	 64.80	0	3857018..3857821	+	267	119961717	-	AAur_3506	-	putative hydroxypyruvate isomerase
3367	 65.42	+1	3857911..3858789	+	292	119962621	-	AAur_3507	-	2-hydroxy-3-oxopropionate reductase
3368	 62.89	0	3858915..3860690	+	591	119961481	gcl	AAur_3508	-	glyoxylate carboligase
3369	 65.55	+1	3860716..3861882	+	388	119960766	glxK	AAur_3509	-	glycerate kinase
3370	 66.67	+1	3861875..3863224	+	449	119962385	allB	AAur_3510	-	allantoinase
3371	 66.18	+1	3863235..3864062	+	275	119963572	-	AAur_3511	-	transcriptional regulator
3372	 63.89	0	3864160..3864627	+	155	119961376	bcp	AAur_3512	-	bacterioferritin comigratory protein (thioredoxin reductase)
3373	 65.24	+1	3864774..3865895	+	373	119962094	-	AAur_3513	-	two-component system response regulator
3374	 62.97	0	3865916..3867892	+	658	119960747	-	AAur_3514	-	glycosyl transferase, group 2 family protein
3375	 62.24	0	3867876..3868214	+	112	119961185	-	AAur_3515	-	putative anti-sigma factor antagonist
3376	 63.10	0	3868207..3868626	+	139	119961038	-	AAur_3516	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.