IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3213	 63.06	0	3682710..3683264	-	184	119960987	-	AAur_3350	-	hydrolase, NUDIX family protein
3214	 62.64	0	3683384..3684178	-	264	119962011	nth	AAur_3351	-	endonuclease III
3215	 66.40	+1	3684190..3685707	-	505	119962468	-	AAur_3352	-	putative integral membrane protein
3216	 65.26	+1	3686177..3688234	+	685	119961321	acsA	AAur_3353	-	acetate--CoA ligase
3217	 64.26	0	3688402..3689190	+	262	119963683	-	AAur_3354	-	DeoR family transcriptional regulator
3218	 65.65	+1	3689305..3690093	+	262	119962634	-	AAur_3355	-	putative ABC transporter, ATP binding protein
3219	 65.04	0	3690101..3691456	+	451	119963072	-	AAur_3356	-	permease
3220	 63.14	0	3691498..3692517	-	339	119960757	-	AAur_3357	-	LacI family transcriptional regulator
3221	 62.58	0	3692532..3693731	-	399	119961470	-	AAur_3358	-	oxidoreductase family, NAD-binding Rossmann fold family protein
3222	 59.70	-1	3694033..3694908	+	291	119962731	-	AAur_3359	-	putative sugar ABC transporter, permease protein
3223	 62.72	0	3694934..3695845	+	303	119963162	-	AAur_3360	-	putative ABC-type sugar transport system, permease component
3224	 61.89	0	3695887..3697227	+	446	119962309	-	AAur_3361	-	putative extracellular sugar-binding protein
3225	 64.92	0	3697345..3699516	+	723	119961486	rafA	AAur_3362	-	alpha-galactosidase (melibiase)
3226	 64.52	0	3699636..3700100	-	154	119963230	aroQ	AAur_3363	-	3-dehydroquinate dehydratase, type II
3227	 64.31	0	3700215..3701360	-	381	119963666	-	AAur_3364	-	trypsin-like serine protease
3228	 66.96	+1	3701635..3702312	+	225	119963283	-	AAur_3365	-	cyclic nucleotide-binding domain-containing protein
3229	 65.13	0	3702433..3703344	-	303	119963582	-	AAur_3366	-	hydrolase
3230	 62.76	0	3703362..3703898	-	178	119961658	-	AAur_3367	-	endoribonuclease L-PSP family protein
3231	 56.41	-2	3703901..3704056	-	51	119962258	-	AAur_3368	-	hypothetical protein
3232	 60.77	0	3704094..3706382	+	762	119960513	-	AAur_3369	-	penicillin-binding protein
3233	 64.64	0	3706385..3707323	+	312	119961095	-	AAur_3370	-	Ser/Thr protein phosphatase family protein
3234	 55.63	-2	3707497..3707949	-	150	119963444	-	AAur_3371	-	MarR family transcriptional regulator
3235	 56.59	-2	3708060..3710402	-	780	119963996	-	AAur_3372	-	MMPL family protein
3236	 57.98	-1	3710417..3711487	-	356	119962883	-	AAur_3373	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase III
3237	 60.74	0	3711492..3712943	-	483	119962909	-	AAur_3374	-	PheA/TfdB family FAD-binding monooxygenase
3238	 56.59	-2	3712976..3713620	-	214	119964118	-	AAur_3375	-	putative hydrolase
3239	 59.65	-1	3713613..3714581	-	322	119960921	-	AAur_3376	-	A-factor biosynthesis repeat-containing protein
3240	 60.75	0	3714717..3715595	-	292	119961622	-	AAur_3377	-	aldo/keto reductase family oxidoreductase
3241	 63.61	0	3715896..3717695	+	599	119961869	-	AAur_3378	-	putative ABC transporter, ATP-binding protein
3242	 62.30	0	3717692..3719524	+	610	119964292	-	AAur_3379	-	putative ABC transporter, ATP-binding protein
3243	 61.47	0	3719934..3720164	-	76	119961157	-	AAur_3381	-	hypothetical protein
3244	 63.35	0	3720289..3721554	+	421	119960674	-	AAur_3382	-	helix-turn-helix domain-containing protein
3245	 63.47	0	3721630..3722568	-	312	119962502	purC	AAur_3383	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3246	 65.42	+1	3722571..3723929	-	452	119964381	purD	AAur_3384	-	phosphoribosylamine--glycine ligase
3247	 63.42	0	3723964..3724980	+	338	119961755	-	AAur_3385	-	putative L-asparaginase, thermolabile
3248	 69.67	+2	3725001..3725399	+	132	119962081	-	AAur_3386	-	hypothetical protein
3249	 60.48	0	3725462..3726949	-	495	119961452	dctA	AAur_3387	-	C4-dicarboxylate transport protein
3250	 64.71	0	3727216..3727983	-	255	119963615	-	AAur_3388	-	short chain dehydrogenase/reductase family oxidoreductase
3251	 63.91	0	3728015..3728776	-	253	119962854	hyuE	AAur_3389	-	hydantoin racemase
3252	 61.11	0	3728854..3730419	-	521	119962053	-	AAur_3390	-	putative cytosine/purine/uracil/thiamine/allantoin permease family protein
3253	 63.25	0	3730704..3733481	+	925	119961193	-	AAur_3391	-	2-oxoacid dehydrogenase subunit E1
3254	 66.67	+1	3733920..3734558	+	212	119960756	-	AAur_3392	-	hypothetical protein
3255	 64.53	0	3734579..3735046	+	155	119964384	-	AAur_3393	-	acetyltransferase, GNAT family protein
3256	 65.60	+1	3735095..3737902	-	935	119963658	-	AAur_3394	-	aldehyde oxidase and xanthine dehydrogenase domain-containing protein
3257	 66.77	+1	3737892..3738830	-	312	119963463	-	AAur_3395	-	putative oxidoreductase
3258	 64.31	0	3738821..3740050	-	409	119961235	-	AAur_3396	-	putative xanthine dehydrogenase accessory factor
3259	 61.30	0	3740409..3741992	-	527	119963094	-	AAur_3397	-	putative xanthine/uracil permease family protein
3260	 61.62	0	3741999..3742493	-	164	119962522	-	AAur_3398	-	putative cytidine/deoxycytidylate deaminase
3261	 67.19	+1	3742907..3744253	+	448	119962401	-	AAur_3399	-	hydroxydechloroatrazine ethylaminohydrolase
3262	 62.25	0	3744353..3745891	-	512	119960608	-	AAur_3400	-	putative lipoprotein
3263	 58.68	-1	3746270..3747208	+	312	119961229	-	AAur_3401	-	hypothetical protein
3264	 61.64	0	3747999..3748913	+	304	119964195	-	AAur_3402	-	putative uricase (urate oxidase)
3265	 61.83	0	3749105..3750613	+	502	119962636	ncs2	AAur_3403	-	uracil-xanthine permease
3266	 63.56	0	3750745..3751227	+	160	119963592	-	AAur_3404	-	hypothetical protein
3267	 65.48	+1	3751283..3752038	-	251	119960892	iclR	AAur_3405	-	glyoxylate bypass transcriptional regulator
3268	 65.02	0	3752260..3753660	+	466	119961892	-	AAur_3406	-	NAD-dependent malic enzyme
3269	 64.79	0	3753679..3755277	+	532	119962344	aceB	AAur_3407	-	malate synthase
3270	 66.43	+1	3755279..3756541	+	420	119963220	-	AAur_3408	-	hypothetical protein
3271	 63.59	0	3756556..3757368	+	270	119963763	-	AAur_3409	-	hypothetical protein
3272	 63.30	0	3757442..3757738	-	98	119960519	-	AAur_3410	-	hypothetical protein
3273	 63.75	0	3757749..3758057	-	102	119962604	-	AAur_3411	-	hypothetical protein
3274	 61.02	0	3758056..3758781	+	241	119963055	-	AAur_3412	-	putative protein of unknown function (DUF664)
3275	 60.09	0	3759258..3760580	+	440	119962687	-	AAur_3413	-	putative transmembrane efflux protein (MFS)
3276	 63.95	0	3760570..3761268	+	232	119964421	-	AAur_3414	-	putative hydantoin racemase
3277	 63.50	0	3761494..3761967	+	157	119963554	-	AAur_3415	-	signal transduction histidine kinase domain-containing protein
3278	 61.64	0	3762075..3764264	+	729	119960894	-	AAur_3416	-	penicillin-binding protein
3279	 60.93	0	3764341..3765072	-	243	119961842	-	AAur_3417	-	glutamine amidotransferase
3280	 63.98	0	3765238..3766464	+	408	119960865	-	AAur_3418	-	major facilitator transporter
3281	 64.36	0	3766579..3767964	+	461	119964006	amt	AAur_3419	-	ammonium transporter
3282	 64.99	0	3768033..3768629	-	198	119963544	-	AAur_3420	-	hypothetical protein
3283	 64.65	0	3768867..3771149	-	760	119962931	-	AAur_3421	-	putative sulfate transporter family protein
3284	 68.25	+2	3771256..3771633	+	125	119962505	-	AAur_3422	-	FG-GAP repeat-containing protein
3285	 64.83	0	3771737..3772822	+	361	119963060	-	AAur_3423	-	hypothetical protein
3286	 65.42	+1	3772816..3774180	+	454	119963421	-	AAur_3424	-	hypothetical protein
3287	 65.88	+1	3774183..3774941	+	252	119961575	-	AAur_3425	-	glycosyl transferase, group 2 family protein
3288	 64.95	0	3774968..3775609	-	213	119961916	adk	AAur_3426	-	adenylate kinase
3289	 60.84	0	3775648..3776145	-	165	119964426	-	AAur_3427	-	hypothetical protein
3290	 59.78	0	3776142..3776504	-	120	119963558	-	AAur_3428	-	ArsR family transcriptional regulator
3291	 62.91	0	3776574..3777371	-	265	119961053	-	AAur_3429	-	SIS domain-containing protein
3292	 61.20	0	3777561..3778949	+	462	119960616	-	AAur_3430	-	major facilitator transporter
3293	 60.20	0	3778946..3779440	+	164	119962278	-	AAur_3431	-	hypothetical protein
3294	 65.13	0	3779442..3780674	+	410	119962895	-	AAur_3432	-	Xaa-Pro dipeptidase (prolidase)
3295	 62.34	0	3780881..3781573	+	230	119962412	-	AAur_3433	-	hypothetical protein
3296	 64.08	0	3781689..3783779	-	696	119960824	-	AAur_3434	-	FG-GAP repeat-containing protein
3297	 64.43	0	3783951..3785606	-	551	119962137	-	AAur_3435	-	putative peptide ABC transporter, ATP-binding protein
3298	 64.45	0	3785603..3786550	-	315	119962098	-	AAur_3436	-	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
3299	 61.69	0	3786561..3787505	-	314	119963020	-	AAur_3437	-	putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
3300	 62.58	0	3787513..3789150	-	545	119962247	-	AAur_3438	-	putative ABC-type dipeptide/oligopeptide transport system
3301	 64.34	0	3789147..3790562	-	471	119960505	-	AAur_3439	-	putative monooxygenase
3302	 66.58	+1	3790612..3791763	-	383	119963032	-	AAur_3440	-	putative monooxygenase
3303	 67.33	+1	3793254..3793703	+	149	119960696	-	AAur_3443	-	rhodanese-like domain-containing protein
3304	 66.01	+1	3793667..3795199	-	510	119963420	-	AAur_3442	-	putative transmembrane efflux protein (MFS)
3305	 65.63	+1	3797183..3798343	-	386	119961911	-	AAur_3445	-	putative alkansulfonate monooxygenase
3306	 60.76	0	3798367..3799026	-	219	119962924	-	AAur_3446	-	putative ABC transporter permease protein
3307	 65.06	0	3799029..3800147	-	372	119961583	-	AAur_3447	-	putative ABC transporter, ATP-binding protein
3308	 60.23	0	3800369..3801253	+	294	119962157	-	AAur_3448	-	putative ABC-type transport system
3309	 63.19	0	3801313..3802662	+	449	119960760	-	AAur_3449	-	putative monooxygenase
3310	 67.03	+1	3802659..3803201	+	180	119962516	-	AAur_3450	-	acetyltransferase, GNAT family protein
3311	 55.38	-2	3803407..3803592	+	61	119962596	-	AAur_3451	-	hypothetical protein
3312	 60.34	0	3803888..3804994	+	368	119961158	-	AAur_3452	-	glycosyl transferase domain-containing protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.