IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2917	 64.67	0	3329734..3330534	+	266	119961890	-	AAur_3049	-	putative ABC transporter, permease protein
2918	 60.44	0	3330531..3331076	-	181	119960752	-	AAur_3048	-	thioesterase family protein
2919	 63.96	0	3331254..3331475	+	73	119962899	-	AAur_3050	-	hypothetical protein
2920	 62.92	0	3331522..3332295	+	257	119962106	-	AAur_3051	-	putative voltage-gated potassium channel protein
2921	 64.42	0	3332751..3333017	-	88	119961180	-	AAur_3053	-	hypothetical protein
2922	 57.72	-1	3333200..3333691	+	163	119962424	-	AAur_3054	-	nucleotide-binding protein
2923	 64.02	0	3333770..3334639	-	289	119960835	-	AAur_3055	-	putative Zn-dependent protease with chaperone function, HtpX-like protein
2924	 65.41	+1	3334748..3336019	-	423	119963686	-	AAur_3056	-	major facilitator transporter
2925	 64.86	0	3336111..3336887	+	258	119962257	-	AAur_3057	-	hypothetical protein
2926	 60.59	0	3336918..3337394	+	158	119962231	fur	AAur_3058	-	ferric uptake regulation protein
2927	 63.09	0	3337410..3338891	+	493	119962803	-	AAur_3059	-	catalase
2928	 59.91	0	3339022..3339657	+	211	119964448	-	AAur_3060	-	hypothetical protein
2929	 60.49	0	3339811..3341364	-	517	119964011	-	AAur_3061	-	putative amino acid permease
2930	 60.43	0	3341531..3341947	-	138	119960986	-	AAur_3062	-	hypothetical protein
2931	 63.44	0	3341947..3342969	-	340	119963610	adhA	AAur_3063	-	Zn-dependent alcohol dehydrogenase
2932	 61.42	0	3343004..3344527	-	507	119963296	-	AAur_3064	-	aldehyde dehydrogenase (NAD) family protein
2933	 65.57	+1	3344624..3345991	-	455	119964184	-	AAur_3065	-	putative transcriptional regulatory protein
2934	 62.08	0	3346055..3347494	-	479	119960516	-	AAur_3066	-	putative ferredoxin/ferredoxin-NADP reductase
2935	 61.14	0	3347612..3348697	+	361	119962357	-	AAur_3067	-	putative integral membrane protein (rarD protein)
2936	 63.61	0	3349023..3351440	+	805	119963956	-	AAur_3068	-	polysaccharide lyase family protein
2937	 66.01	+1	3351590..3352960	-	456	119963104	gabT	AAur_3069	-	4-aminobutyrate aminotransferase
2938	 62.99	0	3353020..3354459	-	479	119963978	-	AAur_3070	-	aldehyde dehydrogenase
2939	 64.62	0	3354573..3356036	+	487	119964402	-	AAur_3071	-	putative transcription regulator
2940	 64.96	0	3356113..3357399	+	428	119961464	-	AAur_3072	-	major facilitator transporter
2941	 65.93	+1	3357396..3358076	+	226	119960555	-	AAur_3073	-	GntR family transcriptional regulator
2942	 62.68	0	3358152..3359531	-	459	119963048	-	AAur_3074	-	metallo-beta-lactamase superfamily protein
2943	 64.35	0	3359616..3361082	-	488	119963983	-	AAur_3075	-	putative ferredoxin/ferredoxin-NADP reductase
2944	 65.63	+1	3361103..3362458	-	451	119960596	cobA	AAur_3076	-	uroporphyrin-III C-methyltransferase
2945	 60.93	0	3362471..3363028	-	185	119961721	-	AAur_3077	-	hypothetical protein
2946	 60.98	0	3363192..3363314	+	40	119960776	-	AAur_3078	-	hypothetical protein
2947	 62.39	0	3363320..3364231	-	303	119962521	-	AAur_3079	-	glutaminase
2948	 58.06	-1	3364446..3365270	-	274	119961904	-	AAur_3080	-	hypothetical protein
2949	 65.04	0	3365347..3366450	-	367	119963593	-	AAur_3081	-	putative alkanal monooxygenase (FMN-linked)
2950	 62.01	0	3366447..3367004	-	185	119963517	-	AAur_3082	-	riboflavin biosynthesis protein RibD
2951	 62.07	0	3367156..3367590	+	144	119961423	-	AAur_3083	-	hypothetical protein
2952	 59.12	-1	3367686..3368321	+	211	119960950	-	AAur_3084	-	hypothetical protein
2953	 62.19	0	3368478..3369326	-	282	119963618	-	AAur_3085	-	hypothetical protein
2954	 61.69	0	3369330..3370274	-	314	119961878	-	AAur_3086	-	ABC transporter, permease protein
2955	 66.28	+1	3370264..3371037	-	257	119962741	-	AAur_3087	-	putative ABC-type nitrate/ taurine/sulfonate/bicarbonate transport system, ATPase component
2956	 61.98	0	3371092..3372243	-	383	119962189	-	AAur_3088	-	aliphatic sulfonate ABC transporter periplasmic substrate-binding protein
2957	 63.94	0	3372398..3373351	-	317	119962403	mmuM	AAur_3089	-	homocysteine methyltransferase
2958	 64.39	0	3373451..3374854	-	467	119963538	cysN	AAur_3090	-	sulfate adenylytransferase, large subunit
2959	 64.69	0	3374855..3375814	-	319	119963478	cysD	AAur_3091	-	sulfate adenylyltransferase subunit 2
2960	 64.67	0	3375811..3376563	-	250	119962974	cysH	AAur_3092	-	phosophoadenylyl-sulfate reductase
2961	 57.36	-1	3378445..3378981	+	178	119960702	-	AAur_3094	-	hypothetical protein
2962	 53.88	-2	3378992..3379468	+	158	119964351	-	AAur_3095	-	hypothetical protein
2963	 64.97	0	3379965..3380729	-	254	119961527	-	AAur_3096	-	putative cbiX family protein
2964	 61.61	0	3380730..3381401	+	223	119961096	-	AAur_3097	-	hypothetical protein
2965	 60.05	0	3381415..3381837	+	140	119962018	-	AAur_3098	-	hypothetical protein
2966	 60.09	0	3381916..3382782	-	288	119963539	-	AAur_3099	-	hypothetical protein
2967	 64.76	0	3383338..3384441	-	367	119964240	-	AAur_3100	-	trans-hexaprenyltranstransferase (heptaprenyl diphosphate synthase)
2968	 64.88	0	3384451..3385794	-	447	119960639	-	AAur_3101	-	putative monooxygenase, FAD-binding
2969	 63.78	0	3385824..3386585	-	253	119961763	-	AAur_3102	-	ubiquinone/menaquinone biosynthesis methyltransferase
2970	 64.31	0	3386677..3388032	+	451	119963179	-	AAur_3103	-	isochorismate synthase
2971	 62.41	0	3388191..3388988	+	265	119961730	-	AAur_3104	-	putative amino acid ABC transporter
2972	 60.98	0	3389093..3389884	+	263	119961621	-	AAur_3105	-	putative amino acid ABC transporter, permease protein
2973	 63.14	0	3389896..3390690	+	264	119961955	glnQ	AAur_3106	-	glutamine ABC transporter, ATP-binding protein
2974	 71.01	+2	3390901..3391728	+	275	119961260	-	AAur_3108	-	hypothetical protein
2975	 67.54	+1	3391715..3393424	-	569	119964077	menD	AAur_3107	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2976	 59.74	0	3393672..3394061	-	129	119962718	-	AAur_3109	-	hypothetical protein
2977	 61.07	0	3394170..3395009	-	279	119963176	-	AAur_3110	-	ISAau1, transposase orfB
2978	 60.22	0	3395039..3395317	-	92	119961874	-	AAur_3111	-	ISAau1, transposase orfA
2979	 60.22	0	3395599..3395877	+	92	119962366	-	AAur_3112	-	ISAau1, transposase orfA
2980	 61.07	0	3395907..3396746	+	279	119962777	-	AAur_3113	-	ISAau1, transposase orfB
2981	 63.70	0	3397035..3399122	-	695	119963742	-	AAur_3114	-	hypothetical protein
2982	 66.08	+1	3399201..3400217	-	338	119964431	menC	AAur_3115	-	o-succinylbenzoic acid (OSB) synthetase
2983	 62.03	0	3400279..3400968	-	229	119964073	-	AAur_3116	-	hypothetical protein
2984	 61.21	0	3400988..3401647	+	219	119961237	-	AAur_3117	-	hypothetical protein
2985	 65.54	+1	3402293..3403357	+	354	119961934	-	AAur_3118	-	LacI family transcriptional regulator
2986	 65.09	0	3403523..3404920	-	465	119961949	-	AAur_3119	-	glycoside hydrolase family protein
2987	 64.26	0	3404948..3405820	-	290	119960858	-	AAur_3120	-	putative ABC-type sugar transport system, permease component
2988	 61.27	0	3405829..3406791	-	320	119961314	-	AAur_3121	-	putative ABC-type sugar transport system, permease component
2989	 62.79	0	3406788..3408206	-	472	119963701	-	AAur_3122	-	extracellular solute-binding domain-containing protein
2990	 64.99	0	3408260..3409270	+	336	119962872	-	AAur_3123	-	PAP2 superfamily domain-containing protein
2991	 57.51	-1	3409467..3409739	-	90	119962594	-	AAur_3124	-	hypothetical protein
2992	 63.42	0	3409950..3411305	+	451	119963042	-	AAur_3125	-	acyltransferase family protein
2993	 58.76	-1	3411406..3414225	-	939	119961646	-	AAur_3126	-	serine protease
2994	 63.79	0	3414373..3415590	-	405	119962356	-	AAur_3127	-	major facilitator transporter
2995	 63.71	0	3416391..3418523	-	710	119960990	-	AAur_3128	-	LPXTG-motif-containing cell wall anchor protein
2996	 62.71	0	3418622..3419707	-	361	119960709	-	AAur_3129	-	hypothetical protein
2997	 61.88	0	3419821..3420510	-	229	119964377	-	AAur_3130	-	hypothetical protein
2998	 61.72	0	3420786..3422483	-	565	119963806	-	AAur_3131	-	putative polysaccharide pyruvyl transferase family protein
2999	 60.01	0	3422419..3425364	-	981	119962824	-	AAur_3132	-	S-layer domain-containing protein
3000	 62.50	0	3425429..3425668	+	79	119962518	-	AAur_3133	-	hypothetical protein
3001	 60.14	0	3425842..3428799	-	985	119962682	-	AAur_3134	-	S-layer domain-containing protein
3002	 59.03	-1	3428971..3430776	-	601	119964111	-	AAur_3135	-	putative O-antigen polymerase family protein
3003	 59.54	-1	3430945..3433470	+	841	119963545	-	AAur_3136	-	S-layer domain-containing protein
3004	 60.73	0	3433535..3434545	-	336	119961439	-	AAur_3137	-	putative cobalt-zinc-cadmium efflux permease
3005	 62.29	0	3434542..3435021	-	159	119960790	-	AAur_3138	-	putative lipoprotein
3006	 60.35	0	3435252..3436613	+	453	119962292	-	AAur_3139	-	integral membrane transporter
3007	 60.23	0	3436606..3437646	+	346	119963268	-	AAur_3140	-	CBS domain-containing protein
3008	 63.29	0	3437753..3437989	-	78	119963719	-	AAur_3141	-	hypothetical protein
3009	 61.44	0	3438054..3440810	+	918	119960808	-	AAur_3142	-	S-layer domain-containing protein
3010	 60.20	0	3440940..3445499	-	1519	119962507	-	AAur_3143	-	serine protease
3011	 61.60	0	3445745..3448723	+	992	119964034	-	AAur_3144	-	S-layer domain-containing protein
3012	 57.75	-1	3448892..3449104	-	70	119963665	-	AAur_3145	-	hypothetical protein
3013	 55.74	-2	3449177..3449542	-	121	119963668	-	AAur_3146	-	cupin domain-containing protein
3014	 60.93	0	3449591..3450061	-	156	119960906	-	AAur_3147	-	hypothetical protein
3015	 64.29	0	3450076..3450876	+	266	119962321	-	AAur_3148	-	AraC family transcriptional regulator
3016	 61.98	0	3451152..3451940	+	262	119962396	-	AAur_3149	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.