IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2855	 64.23	0	3260938..3262002	-	354	119964440	-	AAur_2981	-	putative aminomethyltransferase (glycine cleavage system Tprotein)
2856	 59.44	-1	3262063..3262782	-	239	119963982	-	AAur_2982	-	hypothetical protein
2857	 63.33	0	3262832..3263431	-	199	119963629	-	AAur_2983	-	hypothetical protein
2858	 50.00	-2	3263467..3263580	-	37	119962034	-	AAur_2984	-	hypothetical protein
2859	 62.59	0	3263597..3264331	-	244	119963477	-	AAur_2985	-	putative integral membrane protein
2860	 62.95	0	3264594..3265292	+	232	119963894	-	AAur_2986	-	putative transcriptional regulatory protein
2861	 62.86	0	3265524..3266495	+	323	119962473	-	AAur_2987	-	acetyltransferase, GNAT family protein
2862	 63.20	0	3266599..3268848	+	749	119962016	ppk	AAur_2988	-	polyphosphate kinase
2863	 64.60	0	3268857..3269825	+	322	119962587	-	AAur_2989	-	mutT/nudix family protein
2864	 57.32	-1	3269963..3270283	-	106	119963415	-	AAur_2990	-	hypothetical protein
2865	 61.45	0	3270366..3270710	-	114	119963923	-	AAur_2991	-	hypothetical protein
2866	 62.06	0	3271040..3271843	+	267	119961084	thyA	AAur_2992	-	thymidylate synthase
2867	 64.20	0	3271912..3272439	+	175	119961120	folA	AAur_2993	-	dihydrofolate reductase
2868	 56.76	-2	3272450..3272671	+	73	119963173	-	AAur_2994	-	putative integral membrane protein
2869	 62.38	0	3272778..3273920	+	380	119962728	asd	AAur_2995	-	aspartate-semialdehyde dehydrogenase
2870	 59.96	0	3273934..3275037	-	367	119963638	-	AAur_2996	-	hypothetical protein
2871	 64.46	0	3275077..3276207	-	376	119961468	-	AAur_2997	-	hypothetical protein
2872	 63.96	0	3276293..3276772	+	159	119960944	-	AAur_2998	-	hypothetical protein
2873	 63.11	0	3276868..3277935	-	355	119963625	murB	AAur_2999	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2874	 63.69	0	3277945..3279288	-	447	119964396	-	AAur_3000	-	major facilitator transporter
2875	 63.24	0	3279285..3279722	-	145	119963828	-	AAur_3001	-	MaoC-like domain-containing protein
2876	 64.00	0	3279725..3280174	-	149	119961981	-	AAur_3002	-	hypothetical protein
2877	 56.44	-2	3280233..3280457	-	74	119960588	-	AAur_3003	-	hypothetical protein
2878	 66.23	+1	3280561..3281481	-	306	119962478	-	AAur_3004	-	hypothetical protein
2879	 63.19	0	3281484..3282347	-	287	119964325	-	AAur_3005	-	putative citrate lyase beta subunit
2880	 61.55	0	3282428..3283756	+	442	119963924	-	AAur_3006	-	putative ABC-type nitrate/sulfonate/bicarbonate transport systems
2881	 66.78	+1	3283759..3284646	+	295	119962954	-	AAur_3007	-	putative ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component
2882	 64.39	0	3284646..3285569	+	307	119961771	-	AAur_3008	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
2883	 62.47	0	3285621..3286550	+	309	119962750	tauD	AAur_3009	-	taurine dioxygenase
2884	 63.87	0	3287638..3289392	-	584	119961473	-	AAur_3011	-	putative alpha glucosidase
2885	 59.74	-1	3289469..3290377	-	302	119962365	-	AAur_3012	-	putative ABC-type sugar transport system, permease component
2886	 58.80	-1	3290377..3291291	-	304	119963454	-	AAur_3013	-	putative ABC-type sugar transport system, permease component
2887	 60.78	0	3291316..3292605	-	429	119961727	-	AAur_3014	-	extracellular solute-binding domain-containing protein
2888	 64.46	0	3292844..3294067	+	407	119961045	-	AAur_3015	-	ROK family transcriptional regulator
2889	 63.68	0	3294119..3295690	-	523	119960590	-	AAur_3016	-	Na+/H+ antiporter
2890	 61.64	0	3295817..3296473	-	218	119960490	-	AAur_3017	-	putative NAD dependent sugar epimerase/dehydratase family protein
2891	 68.33	+2	3296874..3297353	-	159	119964521	-	AAur_3020	-	LysM domain-containing protein
2892	 64.33	0	3297584..3299764	-	726	119963381	-	AAur_3021	-	putative ATP-dependent RNA helicase
2893	 61.33	0	3300151..3300750	-	199	119961454	-	AAur_3022	-	MOSC domain-containing protein
2894	 62.37	0	3300849..3301523	-	224	119960910	kdpE	AAur_3023	-	KDP operon transcriptional regulatory
2895	 65.82	+1	3301520..3303055	-	511	119964062	-	AAur_3024	-	sensor histidine kinase
2896	 65.67	+1	3303207..3303905	+	232	119964305	-	AAur_3025	-	Tat pathway signal sequence domain-containing protein
2897	 61.03	0	3303908..3305113	+	401	119963980	-	AAur_3026	-	putative glutathionylspermidine synthase
2898	 63.59	0	3305110..3306636	+	508	119963337	-	AAur_3027	-	putative amino acid permease
2899	 64.78	0	3306688..3307851	+	387	119962188	-	AAur_3029	-	putative glutaryl-CoA dehydrogenase
2900	 62.11	0	3307848..3308615	-	255	119960491	-	AAur_3028	-	TetR family transcriptional regulator
2901	 61.95	0	3308646..3309980	+	444	119960948	-	AAur_3030	-	putative solute-binding lipoprotein
2902	 62.55	0	3309977..3310924	+	315	119964116	-	AAur_3031	-	putative ABC-type sugar transport system, permease component
2903	 61.09	0	3310921..3311835	+	304	119960528	-	AAur_3032	-	putative ABC-type sugar transport system, permease component
2904	 65.12	0	3314973..3316397	-	474	119962797	-	AAur_3034	-	major facilitator transporter
2905	 63.04	0	3316394..3316945	-	183	119961532	-	AAur_3035	-	putative transcriptional regulatory protein
2906	 64.48	0	3317101..3319245	+	714	119963346	-	AAur_3036	-	putative phospholipase C
2907	 65.03	0	3319338..3320501	-	387	119964382	metB	AAur_3037	-	cystathionine gamma-synthase
2908	 63.71	0	3320563..3321948	-	461	119962800	-	AAur_3038	-	cystathionine beta-synthase
2909	 59.29	-1	3322003..3322395	-	130	119962158	-	AAur_3039	-	putative glyoxalase family protein
2910	 66.05	+1	3322538..3323509	+	323	119962605	-	AAur_3040	-	hypothetical protein
2911	 63.88	0	3323614..3324582	+	322	119961014	-	AAur_3041	-	putative ABC-type multidrug transport system, ATPase component
2912	 59.53	-1	3324582..3325394	+	270	119961322	-	AAur_3042	-	putative ABC-type multidrug transport system, permease component
2913	 63.09	0	3325395..3327071	-	558	119964094	-	AAur_3043	-	putative long chain fatty acid-CoA ligase
2914	 60.57	0	3327155..3327433	+	92	119964361	-	AAur_3044	-	antibiotic biosynthesis monooxygenase domain-containing protein
2915	 62.43	0	3327541..3327918	-	125	119961186	trx	AAur_3045	-	thioredoxin
2916	 63.82	0	3328725..3329741	+	338	119962760	-	AAur_3047	-	putative ABC transporter, ATP binding protein
2917	 64.67	0	3329734..3330534	+	266	119961890	-	AAur_3049	-	putative ABC transporter, permease protein
2918	 60.44	0	3330531..3331076	-	181	119960752	-	AAur_3048	-	thioesterase family protein
2919	 63.96	0	3331254..3331475	+	73	119962899	-	AAur_3050	-	hypothetical protein
2920	 62.92	0	3331522..3332295	+	257	119962106	-	AAur_3051	-	putative voltage-gated potassium channel protein
2921	 64.42	0	3332751..3333017	-	88	119961180	-	AAur_3053	-	hypothetical protein
2922	 57.72	-1	3333200..3333691	+	163	119962424	-	AAur_3054	-	nucleotide-binding protein
2923	 64.02	0	3333770..3334639	-	289	119960835	-	AAur_3055	-	putative Zn-dependent protease with chaperone function, HtpX-like protein
2924	 65.41	+1	3334748..3336019	-	423	119963686	-	AAur_3056	-	major facilitator transporter
2925	 64.86	0	3336111..3336887	+	258	119962257	-	AAur_3057	-	hypothetical protein
2926	 60.59	0	3336918..3337394	+	158	119962231	fur	AAur_3058	-	ferric uptake regulation protein
2927	 63.09	0	3337410..3338891	+	493	119962803	-	AAur_3059	-	catalase
2928	 59.91	0	3339022..3339657	+	211	119964448	-	AAur_3060	-	hypothetical protein
2929	 60.49	0	3339811..3341364	-	517	119964011	-	AAur_3061	-	putative amino acid permease
2930	 60.43	0	3341531..3341947	-	138	119960986	-	AAur_3062	-	hypothetical protein
2931	 63.44	0	3341947..3342969	-	340	119963610	adhA	AAur_3063	-	Zn-dependent alcohol dehydrogenase
2932	 61.42	0	3343004..3344527	-	507	119963296	-	AAur_3064	-	aldehyde dehydrogenase (NAD) family protein
2933	 65.57	+1	3344624..3345991	-	455	119964184	-	AAur_3065	-	putative transcriptional regulatory protein
2934	 62.08	0	3346055..3347494	-	479	119960516	-	AAur_3066	-	putative ferredoxin/ferredoxin-NADP reductase
2935	 61.14	0	3347612..3348697	+	361	119962357	-	AAur_3067	-	putative integral membrane protein (rarD protein)
2936	 63.61	0	3349023..3351440	+	805	119963956	-	AAur_3068	-	polysaccharide lyase family protein
2937	 66.01	+1	3351590..3352960	-	456	119963104	gabT	AAur_3069	-	4-aminobutyrate aminotransferase
2938	 62.99	0	3353020..3354459	-	479	119963978	-	AAur_3070	-	aldehyde dehydrogenase
2939	 64.62	0	3354573..3356036	+	487	119964402	-	AAur_3071	-	putative transcription regulator
2940	 64.96	0	3356113..3357399	+	428	119961464	-	AAur_3072	-	major facilitator transporter
2941	 65.93	+1	3357396..3358076	+	226	119960555	-	AAur_3073	-	GntR family transcriptional regulator
2942	 62.68	0	3358152..3359531	-	459	119963048	-	AAur_3074	-	metallo-beta-lactamase superfamily protein
2943	 64.35	0	3359616..3361082	-	488	119963983	-	AAur_3075	-	putative ferredoxin/ferredoxin-NADP reductase
2944	 65.63	+1	3361103..3362458	-	451	119960596	cobA	AAur_3076	-	uroporphyrin-III C-methyltransferase
2945	 60.93	0	3362471..3363028	-	185	119961721	-	AAur_3077	-	hypothetical protein
2946	 60.98	0	3363192..3363314	+	40	119960776	-	AAur_3078	-	hypothetical protein
2947	 62.39	0	3363320..3364231	-	303	119962521	-	AAur_3079	-	glutaminase
2948	 58.06	-1	3364446..3365270	-	274	119961904	-	AAur_3080	-	hypothetical protein
2949	 65.04	0	3365347..3366450	-	367	119963593	-	AAur_3081	-	putative alkanal monooxygenase (FMN-linked)
2950	 62.01	0	3366447..3367004	-	185	119963517	-	AAur_3082	-	riboflavin biosynthesis protein RibD
2951	 62.07	0	3367156..3367590	+	144	119961423	-	AAur_3083	-	hypothetical protein
2952	 59.12	-1	3367686..3368321	+	211	119960950	-	AAur_3084	-	hypothetical protein
2953	 62.19	0	3368478..3369326	-	282	119963618	-	AAur_3085	-	hypothetical protein
2954	 61.69	0	3369330..3370274	-	314	119961878	-	AAur_3086	-	ABC transporter, permease protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.