IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
240	 64.30	0	260022..260825	-	267	119964442	-	AAur_0253	-	hydrolase alpha/beta fold domain-containing protein
241	 65.86	+1	260955..262448	+	497	119961873	-	AAur_0254	-	hypothetical protein
242	 68.00	+2	262489..263391	+	300	119961964	-	AAur_0255	-	putative 3-hydroxybutyrate dehydrogenase
243	 63.32	0	263575..264978	+	467	119962427	-	AAur_0256	-	inner membrane permease YgbN
244	 66.10	+1	264978..265853	+	291	119962566	-	AAur_0257	-	putative fructose/tagatose bisphosphate aldolase
245	 61.58	0	265905..266297	+	130	119963274	-	AAur_0259	-	putative membrane protein‎
246	 60.00	0	266294..266713	-	139	119964211	-	AAur_0258	-	putative glyoxalase family protein
247	 64.45	0	266980..268335	+	451	119961338	-	AAur_0260	-	acyltransferase family protein
248	 56.86	-2	268332..268688	+	118	119961956	-	AAur_0261	-	hypothetical protein
249	 61.17	0	268693..269274	-	193	119962439	-	AAur_0262	-	hypothetical protein
250	 64.74	0	269418..271022	+	534	119962435	-	AAur_0263	-	putative RNA polymerase sigma (70) factor
251	 62.80	0	271207..274080	+	957	119964113	-	AAur_0264	-	hypothetical protein
252	 61.67	0	274123..274482	-	119	119962999	-	AAur_0265	-	hypothetical protein
253	 64.41	0	274825..276330	+	501	119961195	-	AAur_0266	-	putative amino acid decarboxylase, pyridoxal-dependent protein
254	 62.43	0	276327..277670	+	447	119963728	-	AAur_0267	-	putative monooxygenase
255	 64.30	0	277667..278257	+	196	119961265	-	AAur_0268	-	putative acetyltransferase
256	 62.27	0	278254..280095	+	613	119962474	-	AAur_0269	-	putative siderophore synthetase component
257	 63.26	0	280152..281471	-	439	119963905	-	AAur_0270	-	hypothetical protein
258	 64.49	0	281530..282309	+	259	119963515	-	AAur_0271	-	short chain dehydrogenase/reductase family oxidoreductase
259	 56.02	-2	282398..282829	+	143	119963313	-	AAur_0272	-	putative lipoprotein
260	 64.88	0	282835..283953	-	372	119964332	-	AAur_0273	-	putative integral membrane protein
261	 64.07	0	284121..284543	+	140	119962751	-	AAur_0274	-	hypothetical protein
262	 65.31	+1	284540..285055	+	171	119961396	-	AAur_0275	-	acetyltransferase, GNAT family protein
263	 63.68	0	285056..285457	-	133	119963868	-	AAur_0276	-	hypothetical protein
264	 64.58	0	285467..286090	-	207	119960565	-	AAur_0277	-	putative protease synthase and sporulation negative regulatory protein
265	 63.19	0	286098..287018	-	306	119961002	-	AAur_0278	-	hypothetical protein
266	 65.75	+1	287017..288432	+	471	119962648	-	AAur_0279	-	GntR family transcriptional regulator
267	 62.51	0	288562..290196	-	544	119962776	proP	AAur_0280	-	proline-betaine transporter
268	 65.88	+1	290484..291368	-	294	119964526	-	AAur_0281	-	HemK family modification methylase
269	 61.48	0	291660..292064	+	134	119961580	-	AAur_0282	-	hypothetical protein
270	 63.65	0	292208..294763	-	851	119962236	-	AAur_0283	-	ATP-dependent DNA ligase
271	 58.53	-1	294784..295668	+	294	119961605	-	AAur_0284	-	Ku protein
272	 52.81	-2	295729..295995	-	88	119960715	-	AAur_0285	-	hypothetical protein
273	 60.94	0	296047..296832	-	261	119964486	-	AAur_0286	-	hypothetical protein
274	 60.33	0	296766..297428	-	220	119961743	-	AAur_0287	-	hypothetical protein
275	 54.50	-2	297725..297946	-	73	119964407	-	AAur_0288	-	hypothetical protein
276	 58.55	-1	298106..298684	+	192	119963793	-	AAur_0289	-	DNA-binding stress response protein
277	 62.71	0	298729..299688	+	319	119963495	-	AAur_0290	-	hypothetical protein
278	 61.29	0	299776..300333	+	185	119962922	-	AAur_0291	-	putative integral membrane protein
279	 63.61	0	300340..300927	+	195	119963519	-	AAur_0292	-	TetR family transcriptional regulator
280	 65.94	+1	301009..301284	-	91	119962145	-	AAur_0293	-	phosphocarrier protein HPr
281	 65.54	+1	301359..303392	-	677	119961701	-	AAur_0294	-	PTS system, fructose-specific family, IIABC components
282	 67.17	+1	303389..304381	-	330	119961205	fruK	AAur_0295	-	1-phosphofructokinase
283	 64.52	0	304378..305169	-	263	119960768	-	AAur_0296	-	DeoR family transcriptional regulator
284	 60.39	0	305636..305890	-	84	119962492	-	AAur_0297	-	hypothetical protein
285	 61.37	0	305905..306357	-	150	119961318	-	AAur_0298	-	hypothetical protein
286	 60.72	0	306513..307286	+	257	119960703	-	AAur_0299	-	ANTAR domain-containing protein
287	 64.50	0	307989..309143	+	384	119963656	-	AAur_0300	-	carboxylate-amine ligase
288	 62.69	0	309186..309587	-	133	119964161	-	AAur_0301	-	glyoxalase family protein
289	 62.64	0	309607..310053	-	148	119962990	-	AAur_0302	-	AraC family transcriptional regulator
290	 61.06	0	310112..310735	+	207	119961220	-	AAur_0303	-	putative phospholipase/carboxylesterase
291	 62.45	0	310923..311942	+	339	119961773	-	AAur_0304	-	LacI family transcriptional regulator
292	 63.69	0	312714..315068	+	784	119960896	-	AAur_0306	-	putative trehalose/maltose hydrolase ( phosphorylase)
293	 62.99	0	315134..315487	-	117	119961305	-	AAur_0307	-	hypothetical protein
294	 61.62	0	317246..317701	-	151	119962532	-	AAur_0309	-	MarR family transcriptional regulator
295	 64.42	0	317764..318519	+	251	119963134	-	AAur_0310	-	putative methyltransferase
296	 62.82	0	318896..320014	+	372	119961162	-	AAur_0311	-	phenylalanyl-tRNA synthetase domain-containing protein
297	 64.29	0	320133..320468	+	111	119962083	-	AAur_0312	-	putative lipoprotein
298	 63.57	0	320503..322020	-	505	119962772	-	AAur_0313	-	hypothetical protein
299	 64.03	0	322230..323063	-	277	119961164	-	AAur_0314	-	putative integral membrane protein
300	 58.29	-1	323091..323663	+	190	119961896	-	AAur_0316	-	MarR family transcriptional regulator
301	 63.83	0	323658..324575	-	305	119964338	ubiA	AAur_0315	-	prenyltransferase
302	 62.86	0	325210..326862	-	550	119961546	-	AAur_0318	-	putative phytoene desaturase
303	 64.35	0	326859..327764	-	301	119962910	crtB	AAur_0319	-	phytoene synthase
304	 63.96	0	327761..328870	-	369	119962314	-	AAur_0320	-	putative geranylgeranyl pyrophosphate synthase
305	 61.26	0	328867..329421	-	184	119960796	idi	AAur_0321	-	isopentenyl-diphosphate delta-isomerase
306	 62.41	0	329524..330111	+	195	119960614	-	AAur_0322	-	MarR family transcriptional regulator
307	 59.62	-1	330120..330800	-	226	119962694	-	AAur_0323	-	putative CAAX amino terminal protease family protein
308	 63.54	0	331113..332231	+	372	119963877	-	AAur_0324	-	EAL domain-containing protein
309	 61.00	0	332347..333651	+	434	119962325	-	AAur_0325	-	putative integral membrane protein
310	 61.20	0	333560..334948	+	462	119962989	-	AAur_0327	-	putative integral membrane protein
311	 62.25	0	334945..336552	-	535	119960954	-	AAur_0326	-	putative integral membrane protein
312	 64.60	0	336739..337611	-	290	119961959	-	AAur_0328	-	GDSL-like lipase/acylhydrolase domain-containing protein
313	 68.02	+2	337683..338420	-	245	119964110	-	AAur_0329	-	mycothiol-dependent maleylpyruvate isomerase
314	 65.59	+1	338420..339256	-	278	119963807	-	AAur_0330	-	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
315	 65.88	+1	339253..340395	-	380	119964388	gtdA	AAur_0331	-	gentisate 1,2-dioxygenase
316	 65.58	+1	340490..341314	-	274	119960628	-	AAur_0332	-	IclR family transcriptional regulator
317	 65.20	+1	341333..342631	+	432	119960754	-	AAur_0333	-	putative benzoate MFS transporter
318	 65.95	+1	342624..343874	+	416	119962410	-	AAur_0334	-	putative aromatic-ring hydroxylase (monooxygenase)
319	 57.46	-1	343906..344850	-	314	119962481	-	AAur_0335	-	LysR family transcriptional regulator
320	 61.55	0	344929..346257	+	442	119962788	-	AAur_0336	-	major facilitator transporter
321	 60.32	0	346299..347228	+	309	119963129	-	AAur_0337	-	putative nitrilase
322	 60.30	0	347271..347741	-	156	119963693	-	AAur_0338	-	hypothetical protein
323	 62.08	0	347805..348611	-	268	119964234	-	AAur_0339	-	DeoR family transcriptional regulator
324	 62.77	0	348801..349853	-	350	119960940	-	AAur_0340	-	aldo/keto reductase family oxidoreductase
325	 62.22	0	349766..350776	-	336	119961124	-	AAur_0341	-	hypothetical protein
326	 66.67	+1	350923..352113	-	396	119961812	adhT	AAur_0342	-	alcohol dehydrogenase
327	 61.98	0	352026..353114	-	362	119961206	-	AAur_0343	-	carbon-nitrogen family hydrolase
328	 62.98	0	354886..355482	-	198	119961469	-	AAur_0345	-	hypothetical protein
329	 63.70	0	355469..356614	-	381	119960934	-	AAur_0346	-	putative D-ribose ABC transporter permease protein
330	 63.69	0	356649..358193	-	514	119962422	-	AAur_0347	-	D-ribose transport system ATP-binding protein
331	 63.22	0	358206..359279	-	357	119962784	rbsB	AAur_0348	-	D-ribose-binding protein precursor
332	 64.81	0	359365..360336	-	323	119963349	fruK	AAur_0349	-	1-phosphofructokinase
333	 65.56	+1	360333..361142	-	269	119961659	-	AAur_0350	-	DeoR family transcriptional regulator
334	 65.43	+1	361139..362512	-	457	119964485	-	AAur_0351	-	putative carbohydrate kinase
335	 63.38	0	362650..363501	+	283	119960493	-	AAur_0352	-	putative fructose/tagatose bisphosphate aldolase
336	 63.36	0	363498..364403	+	301	119963492	-	AAur_0353	-	putative aldose-1-epimerase
337	 65.10	0	364449..365276	-	275	119963882	-	AAur_0354	-	helix-turn-helix domain-containing protein
338	 65.65	+1	365363..367225	+	620	119962245	ilvD	AAur_0356	-	dihydroxy-acid dehydratase
339	 64.96	0	367222..369042	-	606	119962319	-	AAur_0355	-	pyruvate decarboxylase
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.