IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2821	 61.67	0	3219519..3220358	-	279	119961061	rplB	AAur_2945	-	50S ribosomal protein L2
2822	 56.86	-2	3220388..3220693	-	101	119962458	rplW	AAur_2946	-	ribosomal protein L23
2823	 62.62	0	3220690..3221307	-	205	119961638	rplD	AAur_2947	-	ribosomal protein L4
2824	 62.98	0	3221312..3221962	-	216	119963305	rplC	AAur_2948	-	ribosomal protein L3
2825	 55.99	-2	3221980..3222288	-	102	119961625	rpsJ	AAur_2949	-	ribosomal protein S10
2826	 60.69	0	3222671..3224110	+	479	119962545	bglA	AAur_2950	-	beta-glucosidase
2827	 63.44	0	3224307..3228554	-	1415	119963932	-	AAur_2951	-	putative integral membrane protein
2828	 60.20	0	3228709..3229899	-	396	119961333	tuf	AAur_2952	-	elongation factor Tu
2829	 59.34	-1	3230131..3232245	-	704	119960723	fusA	AAur_2953	-	elongation factor G
2830	 61.78	0	3232315..3232785	-	156	119961568	rpsG	AAur_2954	-	30S ribosomal protein S7
2831	 61.87	0	3232787..3233161	-	124	119963152	rpsL	AAur_2955	-	30S ribosomal protein S12
2832	 61.64	0	3233575..3237474	-	1299	119964498	rpoC	AAur_2956	-	DNA-directed RNA polymerase subunit beta'
2833	 60.53	0	3237578..3241099	-	1173	119960861	rpoB	AAur_2957	-	DNA-directed RNA polymerase subunit beta
2834	 64.33	0	3241489..3242688	+	399	119960976	-	AAur_2958	-	acetyl-CoA acetyltransferase
2835	 67.27	+1	3242688..3243182	+	164	119964029	-	AAur_2959	-	putative ybaK/ebsC protein
2836	 56.61	-2	3243255..3243632	-	125	119962698	rplL	AAur_2960	-	ribosomal protein L7/L12
2837	 59.60	-1	3243709..3244302	-	197	119961776	rplJ	AAur_2961	-	50S ribosomal protein L10
2838	 61.72	0	3244602..3245753	-	383	119962143	-	AAur_2962	-	acetyltransferase, GNAT family protein
2839	 63.15	0	3245750..3246859	-	369	119960548	-	AAur_2963	-	putative acetyltransferase, GNAT family protein
2840	 60.45	0	3246971..3247678	-	235	119960983	rplA	AAur_2964	-	50S ribosomal protein L1
2841	 59.03	-1	3247826..3248257	-	143	119964022	rplK	AAur_2965	-	ribosomal protein L11
2842	 61.57	0	3248388..3249290	-	300	119963130	nusG	AAur_2966	-	transcription termination/antitermination factor NusG
2843	 59.22	-1	3249375..3249656	-	93	119962697	secE	AAur_2967	-	preprotein translocase subunit SecE
2844	 64.15	0	3250062..3251291	+	409	119963577	-	AAur_2969	-	aspartate aminotransferase
2845	 62.81	0	3251590..3252264	-	224	119960584	-	AAur_2970	-	two-component system response regulator
2846	 64.81	0	3252264..3253775	-	503	119961150	-	AAur_2971	-	putative signal transduction histidine kinase
2847	 68.55	+2	3253897..3254055	-	52	119963808	-	AAur_2972	-	hypothetical protein
2848	 65.88	+1	3254237..3255514	+	425	119964375	-	AAur_2973	-	putative integral membrane protein
2849	 64.94	0	3255516..3255920	+	134	119964392	-	AAur_2974	-	hypothetical protein
2850	 60.24	0	3255970..3256218	+	82	119964136	-	AAur_2975	-	putative stress-responsive transcriptional regulator PspC
2851	 63.65	0	3256410..3257435	+	341	119963702	pfkA	AAur_2976	-	6-phosphofructokinase
2852	 66.53	+1	3257453..3258202	+	249	119961357	-	AAur_2977	-	acetyltransferase, GNAT family protein
2853	 61.11	0	3259809..3260438	-	209	119963387	-	AAur_2979	-	PadR family transcriptional regulator
2854	 64.89	0	3260549..3260941	-	130	119963192	-	AAur_2980	-	ankyrin repeat-containing protein
2855	 64.23	0	3260938..3262002	-	354	119964440	-	AAur_2981	-	putative aminomethyltransferase (glycine cleavage system Tprotein)
2856	 59.44	-1	3262063..3262782	-	239	119963982	-	AAur_2982	-	hypothetical protein
2857	 63.33	0	3262832..3263431	-	199	119963629	-	AAur_2983	-	hypothetical protein
2858	 50.00	-2	3263467..3263580	-	37	119962034	-	AAur_2984	-	hypothetical protein
2859	 62.59	0	3263597..3264331	-	244	119963477	-	AAur_2985	-	putative integral membrane protein
2860	 62.95	0	3264594..3265292	+	232	119963894	-	AAur_2986	-	putative transcriptional regulatory protein
2861	 62.86	0	3265524..3266495	+	323	119962473	-	AAur_2987	-	acetyltransferase, GNAT family protein
2862	 63.20	0	3266599..3268848	+	749	119962016	ppk	AAur_2988	-	polyphosphate kinase
2863	 64.60	0	3268857..3269825	+	322	119962587	-	AAur_2989	-	mutT/nudix family protein
2864	 57.32	-1	3269963..3270283	-	106	119963415	-	AAur_2990	-	hypothetical protein
2865	 61.45	0	3270366..3270710	-	114	119963923	-	AAur_2991	-	hypothetical protein
2866	 62.06	0	3271040..3271843	+	267	119961084	thyA	AAur_2992	-	thymidylate synthase
2867	 64.20	0	3271912..3272439	+	175	119961120	folA	AAur_2993	-	dihydrofolate reductase
2868	 56.76	-2	3272450..3272671	+	73	119963173	-	AAur_2994	-	putative integral membrane protein
2869	 62.38	0	3272778..3273920	+	380	119962728	asd	AAur_2995	-	aspartate-semialdehyde dehydrogenase
2870	 59.96	0	3273934..3275037	-	367	119963638	-	AAur_2996	-	hypothetical protein
2871	 64.46	0	3275077..3276207	-	376	119961468	-	AAur_2997	-	hypothetical protein
2872	 63.96	0	3276293..3276772	+	159	119960944	-	AAur_2998	-	hypothetical protein
2873	 63.11	0	3276868..3277935	-	355	119963625	murB	AAur_2999	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2874	 63.69	0	3277945..3279288	-	447	119964396	-	AAur_3000	-	major facilitator transporter
2875	 63.24	0	3279285..3279722	-	145	119963828	-	AAur_3001	-	MaoC-like domain-containing protein
2876	 64.00	0	3279725..3280174	-	149	119961981	-	AAur_3002	-	hypothetical protein
2877	 56.44	-2	3280233..3280457	-	74	119960588	-	AAur_3003	-	hypothetical protein
2878	 66.23	+1	3280561..3281481	-	306	119962478	-	AAur_3004	-	hypothetical protein
2879	 63.19	0	3281484..3282347	-	287	119964325	-	AAur_3005	-	putative citrate lyase beta subunit
2880	 61.55	0	3282428..3283756	+	442	119963924	-	AAur_3006	-	putative ABC-type nitrate/sulfonate/bicarbonate transport systems
2881	 66.78	+1	3283759..3284646	+	295	119962954	-	AAur_3007	-	putative ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component
2882	 64.39	0	3284646..3285569	+	307	119961771	-	AAur_3008	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
2883	 62.47	0	3285621..3286550	+	309	119962750	tauD	AAur_3009	-	taurine dioxygenase
2884	 63.87	0	3287638..3289392	-	584	119961473	-	AAur_3011	-	putative alpha glucosidase
2885	 59.74	-1	3289469..3290377	-	302	119962365	-	AAur_3012	-	putative ABC-type sugar transport system, permease component
2886	 58.80	-1	3290377..3291291	-	304	119963454	-	AAur_3013	-	putative ABC-type sugar transport system, permease component
2887	 60.78	0	3291316..3292605	-	429	119961727	-	AAur_3014	-	extracellular solute-binding domain-containing protein
2888	 64.46	0	3292844..3294067	+	407	119961045	-	AAur_3015	-	ROK family transcriptional regulator
2889	 63.68	0	3294119..3295690	-	523	119960590	-	AAur_3016	-	Na+/H+ antiporter
2890	 61.64	0	3295817..3296473	-	218	119960490	-	AAur_3017	-	putative NAD dependent sugar epimerase/dehydratase family protein
2891	 68.33	+2	3296874..3297353	-	159	119964521	-	AAur_3020	-	LysM domain-containing protein
2892	 64.33	0	3297584..3299764	-	726	119963381	-	AAur_3021	-	putative ATP-dependent RNA helicase
2893	 61.33	0	3300151..3300750	-	199	119961454	-	AAur_3022	-	MOSC domain-containing protein
2894	 62.37	0	3300849..3301523	-	224	119960910	kdpE	AAur_3023	-	KDP operon transcriptional regulatory
2895	 65.82	+1	3301520..3303055	-	511	119964062	-	AAur_3024	-	sensor histidine kinase
2896	 65.67	+1	3303207..3303905	+	232	119964305	-	AAur_3025	-	Tat pathway signal sequence domain-containing protein
2897	 61.03	0	3303908..3305113	+	401	119963980	-	AAur_3026	-	putative glutathionylspermidine synthase
2898	 63.59	0	3305110..3306636	+	508	119963337	-	AAur_3027	-	putative amino acid permease
2899	 64.78	0	3306688..3307851	+	387	119962188	-	AAur_3029	-	putative glutaryl-CoA dehydrogenase
2900	 62.11	0	3307848..3308615	-	255	119960491	-	AAur_3028	-	TetR family transcriptional regulator
2901	 61.95	0	3308646..3309980	+	444	119960948	-	AAur_3030	-	putative solute-binding lipoprotein
2902	 62.55	0	3309977..3310924	+	315	119964116	-	AAur_3031	-	putative ABC-type sugar transport system, permease component
2903	 61.09	0	3310921..3311835	+	304	119960528	-	AAur_3032	-	putative ABC-type sugar transport system, permease component
2904	 65.12	0	3314973..3316397	-	474	119962797	-	AAur_3034	-	major facilitator transporter
2905	 63.04	0	3316394..3316945	-	183	119961532	-	AAur_3035	-	putative transcriptional regulatory protein
2906	 64.48	0	3317101..3319245	+	714	119963346	-	AAur_3036	-	putative phospholipase C
2907	 65.03	0	3319338..3320501	-	387	119964382	metB	AAur_3037	-	cystathionine gamma-synthase
2908	 63.71	0	3320563..3321948	-	461	119962800	-	AAur_3038	-	cystathionine beta-synthase
2909	 59.29	-1	3322003..3322395	-	130	119962158	-	AAur_3039	-	putative glyoxalase family protein
2910	 66.05	+1	3322538..3323509	+	323	119962605	-	AAur_3040	-	hypothetical protein
2911	 63.88	0	3323614..3324582	+	322	119961014	-	AAur_3041	-	putative ABC-type multidrug transport system, ATPase component
2912	 59.53	-1	3324582..3325394	+	270	119961322	-	AAur_3042	-	putative ABC-type multidrug transport system, permease component
2913	 63.09	0	3325395..3327071	-	558	119964094	-	AAur_3043	-	putative long chain fatty acid-CoA ligase
2914	 60.57	0	3327155..3327433	+	92	119964361	-	AAur_3044	-	antibiotic biosynthesis monooxygenase domain-containing protein
2915	 62.43	0	3327541..3327918	-	125	119961186	trx	AAur_3045	-	thioredoxin
2916	 63.82	0	3328725..3329741	+	338	119962760	-	AAur_3047	-	putative ABC transporter, ATP binding protein
2917	 64.67	0	3329734..3330534	+	266	119961890	-	AAur_3049	-	putative ABC transporter, permease protein
2918	 60.44	0	3330531..3331076	-	181	119960752	-	AAur_3048	-	thioesterase family protein
2919	 63.96	0	3331254..3331475	+	73	119962899	-	AAur_3050	-	hypothetical protein
2920	 62.92	0	3331522..3332295	+	257	119962106	-	AAur_3051	-	putative voltage-gated potassium channel protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.