IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2716	 62.94	0	3118998..3119534	-	178	119961715	-	AAur_2839	-	transcriptional regulator
2717	 58.73	-1	3119702..3120016	+	104	119963359	-	AAur_2840	-	PadR family transcriptional regulator
2718	 59.09	-1	3120013..3120540	+	175	119962825	-	AAur_2841	-	hypothetical protein
2719	 59.61	-1	3120575..3120985	-	136	119963325	-	AAur_2842	-	rifampin ADP-ribosyl transferase
2720	 58.68	-1	3121033..3121470	-	145	119961312	-	AAur_2843	-	hypothetical protein
2721	 53.59	-2	3121457..3121609	-	50	119960739	-	AAur_2844	-	hypothetical protein
2722	 65.64	+1	3121647..3122327	+	226	119963776	-	AAur_2845	-	hypothetical protein
2723	 62.12	0	3122454..3123200	+	248	119964363	-	AAur_2846	-	hypothetical protein
2724	 60.00	0	3123223..3123597	+	124	119963682	-	AAur_2847	-	hypothetical protein
2725	 62.05	0	3123720..3124520	-	266	119963447	-	AAur_2849	-	putative NAD dependent epimerase/dehydratase family protein
2726	 61.08	0	3124527..3125456	-	309	119962794	-	AAur_2850	-	hypothetical protein
2727	 61.11	0	3125563..3126174	-	203	119962270	-	AAur_2851	-	putative ribosomal-protein-alanine N-acetyltransferase
2728	 60.24	0	3126181..3127113	-	310	119964525	galU	AAur_2852	-	UTP-glucose-1-phosphate uridylyltransferase
2729	 62.93	0	3127188..3127829	+	213	119962860	-	AAur_2853	-	putative 5-formyltetrahydrofolate cyclo-ligase
2730	 61.69	0	3127983..3128243	+	86	119960597	-	AAur_2854	-	hypothetical protein
2731	 65.19	+1	3128309..3129118	+	269	119961714	-	AAur_2855	-	Flp pilus assembly protein
2732	 62.70	0	3129142..3133323	-	1393	119961678	-	AAur_2856	-	hypothetical protein
2733	 62.96	0	3133485..3135074	-	529	119962972	guaA	AAur_2857	-	bifunctional GMP synthase/glutamine amidotransferase protein
2734	 57.88	-1	3135180..3135680	-	166	119960613	-	AAur_2858	-	putative integral membrane protein
2735	 62.11	0	3135677..3136531	-	284	119962133	-	AAur_2859	-	hypothetical protein
2736	 60.53	0	3136842..3137330	-	162	119963925	-	AAur_2860	-	PTS system, IIA component
2737	 62.96	0	3137378..3139132	-	584	119963345	-	AAur_2861	-	putative glycerol-3-phosphate dehydrogenase
2738	 63.43	0	3139284..3139931	-	215	119962804	-	AAur_2862	-	hypothetical protein
2739	 63.19	0	3139928..3140560	-	210	119962253	-	AAur_2863	-	hypothetical protein
2740	 62.47	0	3140610..3141491	-	293	119961666	-	AAur_2864	-	hypothetical protein
2741	 63.32	0	3141643..3142779	-	378	119961106	-	AAur_2865	-	inositol-5-monophosphate dehydrogenase
2742	 61.28	0	3142883..3144775	-	630	119964483	-	AAur_2866	-	putative ABC transporter, ATP-binding protein
2743	 64.35	0	3144873..3146384	-	503	119963910	guaB	AAur_2867	-	inosine-5'-monophosphate dehydrogenase
2744	 62.64	0	3146628..3148712	-	694	119962466	-	AAur_2868	-	acyltransferase domain-containing protein
2745	 60.29	0	3148709..3150811	-	700	119962008	-	AAur_2869	-	acyltransferase domain-containing protein
2746	 60.89	0	3150989..3152131	-	380	119961278	-	AAur_2870	-	putative potassium uptake protein (trkA)
2747	 55.66	-2	3152128..3152445	-	105	119962364	-	AAur_2871	-	hypothetical protein
2748	 55.45	-2	3152131..3152460	+	109	119964045	-	AAur_2872	-	hypothetical protein
2749	 64.53	0	3152545..3154179	-	544	119963767	-	AAur_2873	-	LuxR family transcriptional regulator
2750	 63.82	0	3154341..3155954	-	537	119962908	groL	AAur_2874	-	chaperonin GroEL
2751	 58.92	-1	3156040..3156336	-	98	119962669	groES	AAur_2875	-	chaperonin groES
2752	 60.99	0	3156528..3156809	-	93	119963566	-	AAur_2876	-	hypothetical protein
2753	 65.04	0	3156958..3158187	+	409	119964237	-	AAur_2877	-	hypothetical protein
2754	 63.76	0	3158192..3158983	-	263	119961781	aroE	AAur_2878	-	shikimate 5-dehydrogenase
2755	 58.54	-1	3159043..3159165	-	40	119962570	rpmJ	AAur_2879	-	50S ribosomal protein L36
2756	 65.53	+1	3159195..3160253	-	352	119962907	-	AAur_2880	-	cobalamin synthesis protein CobW
2757	 61.46	0	3160504..3161655	+	383	119963228	-	AAur_2882	-	carboxylate-amine ligase
2758	 60.05	0	3161652..3162392	-	246	119964477	-	AAur_2881	-	hypothetical protein
2759	 63.96	0	3162486..3163592	-	368	119962840	-	AAur_2883	-	putative O-sialoglycoprotein endopeptidase
2760	 63.10	0	3163628..3164131	-	167	119963453	rimI	AAur_2884	-	ribosomal-protein-alanine acetyltransferase
2761	 63.39	0	3164145..3164816	-	223	119963847	-	AAur_2885	-	putative glycoprotease family protein
2762	 63.21	0	3164816..3165394	-	192	119964321	-	AAur_2886	-	putative ATPase or kinase
2763	 65.95	+1	3165391..3166644	-	417	119963782	alr	AAur_2887	-	alanine racemase
2764	 63.89	0	3166701..3167852	-	383	119961054	-	AAur_2888	-	putative sugar kinase
2765	 65.94	+1	3167842..3169215	+	457	119960495	-	AAur_2890	-	6-phospho-beta-glucosidase
2766	 60.09	0	3169212..3169880	-	222	119963489	-	AAur_2889	-	acetyltransferase, GNAT family protein
2767	 63.65	0	3169860..3171086	+	408	119962991	-	AAur_2891	-	putative glycosyl transferase, group 1 family protein
2768	 62.11	0	3171186..3172874	+	562	119964254	fhs	AAur_2892	-	formate--tetrahydrofolate ligase
2769	 61.33	0	3173227..3174312	-	361	119964274	-	AAur_2893	-	putative myo-inositol-1-phosphate synthase
2770	 62.33	0	3174481..3175518	-	345	119963705	-	AAur_2894	-	aldo/keto reductase family oxidoreductase
2771	 61.99	0	3175598..3177370	-	590	119962538	treZ	AAur_2895	-	malto-oligosyltrehalose trehalohydrolase
2772	 63.16	0	3177498..3179810	-	770	119961923	treY	AAur_2896	-	malto-oligosyltrehalose synthase
2773	 60.62	0	3179807..3182089	-	760	119961611	glgX	AAur_2897	-	glycogen debranching enzyme GlgX
2774	 66.73	+1	3182159..3183658	-	499	119962489	-	AAur_2898	-	YjeF family protein
2775	 64.08	0	3183752..3184099	-	115	119961152	-	AAur_2899	-	putative holo-(acyl-carrier-protein) synthase
2776	 61.34	0	3184104..3186017	-	637	119963699	glmS	AAur_2900	-	D-fructose-6-phosphate amidotransferase
2777	 61.93	0	3186126..3187097	+	323	119964235	coaA	AAur_2901	-	pantothenate kinase
2778	 66.17	+1	3187168..3187968	+	266	119964047	-	AAur_2902	-	putative D-alanyl-D-alanine carboxypeptidase family protein
2779	 63.59	0	3188040..3189404	-	454	119964409	glmM	AAur_2903	-	phosphoglucosamine mutase
2780	 61.54	0	3189564..3190070	-	168	119963208	rpsI	AAur_2904	-	ribosomal protein S9
2781	 62.16	0	3190109..3190552	-	147	119963410	rplM	AAur_2905	-	50S ribosomal protein L13
2782	 61.55	0	3190841..3191485	+	214	119961816	-	AAur_2906	-	putative type IV leader peptidase family protein
2783	 58.08	-1	3191805..3192002	+	65	119962026	-	AAur_2907	-	hypothetical protein
2784	 58.00	-1	3192098..3192547	+	149	119960552	-	AAur_2908	-	putative TadE-like family protein
2785	 59.72	-1	3192535..3193599	+	354	119961201	-	AAur_2909	-	hypothetical protein
2786	 60.11	0	3193644..3194390	+	248	119963620	-	AAur_2910	-	Flp pilus assembly protein
2787	 60.82	0	3194387..3195583	+	398	119962025	-	AAur_2911	-	putative flp pilus assembly protein CpaE
2788	 56.83	-2	3195580..3197022	+	480	119961569	-	AAur_2912	-	putative Type II/IV secretion system protein
2789	 60.57	0	3197019..3197969	+	316	119962927	-	AAur_2913	-	type II secretion system protein F
2790	 58.81	-1	3197979..3198869	+	296	119962497	-	AAur_2914	-	type II secretion system protein F
2791	 61.14	0	3199157..3200332	+	391	119963804	-	AAur_2915	-	trypsin-like serine protease
2792	 62.85	0	3200350..3201240	-	296	119963259	truA	AAur_2916	-	tRNA pseudouridine synthase A
2793	 63.86	0	3201273..3201842	-	189	119960679	rplQ	AAur_2917	-	ribosomal protein L17
2794	 60.53	0	3201909..3202919	-	336	119961601	rpoA	AAur_2918	-	DNA-directed RNA polymerase subunit alpha
2795	 64.98	0	3203069..3203365	-	98	119960872	rpsK	AAur_2919	-	30S ribosomal protein S11
2796	 62.17	0	3203522..3203899	-	125	161897604	rpsM	AAur_2920	-	30S ribosomal protein S13
2797	 59.65	-1	3204096..3204209	-	37	119963378	rpmJ	AAur_2921	-	ribosomal protein L36
2798	 54.95	-2	3204282..3204503	-	73	119962208	infA	AAur_2922	-	translation initiation factor IF-1
2799	 67.64	+1	3204699..3205730	-	343	119961691	-	AAur_2923	-	T4 family peptidase
2800	 58.69	-1	3206039..3207028	+	329	119960992	ugpA	AAur_2924	-	sn-glycerol-3-phosphate transport system permease protein
2801	 60.07	0	3207082..3207945	+	287	119960564	ugpE	AAur_2925	-	sn-glycerol-3-phosphate-binding protein
2802	 62.58	0	3207998..3209344	+	448	119964456	ugpB	AAur_2926	-	secreted sn-glycerol-3-phosphate-binding protein
2803	 62.50	0	3209408..3210391	-	327	119961505	map	AAur_2927	-	methionine aminopeptidase, type I
2804	 61.49	0	3210422..3211000	-	192	119960842	adk	AAur_2928	-	adenylate kinase
2805	 58.58	-1	3210997..3212307	-	436	119961273	secY	AAur_2929	-	preprotein translocase subunit SecY
2806	 61.70	0	3212492..3212974	-	160	119963995	rplO	AAur_2930	-	ribosomal protein L15
2807	 57.49	-1	3212974..3213180	-	68	119961796	rpmD	AAur_2931	-	ribosomal protein L30
2808	 65.48	+1	3213183..3213854	-	223	119964099	rpsE	AAur_2932	-	ribosomal protein S5
2809	 60.94	0	3213884..3214267	-	127	119963218	rplR	AAur_2933	-	ribosomal protein L18
2810	 59.78	0	3214271..3214807	-	178	119961409	rplF	AAur_2934	-	ribosomal protein L6
2811	 60.65	0	3214826..3215224	-	132	119963773	rpsH	AAur_2935	-	30S ribosomal protein S8
2812	 57.69	-1	3215303..3215881	-	192	119964088	rplE	AAur_2936	-	50S ribosomal protein L5
2813	 60.28	0	3215881..3216240	-	119	119964410	rplX	AAur_2937	-	50S ribosomal protein L24
2814	 57.45	-1	3216244..3216612	-	122	119963146	rplN	AAur_2938	-	ribosomal protein L14
2815	 57.91	-1	3216966..3217262	-	98	119961764	rpsQ	AAur_2939	-	ribosomal protein S17
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.