IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2360	 61.19	0	2711054..2712349	-	431	119963189	-	AAur_2467	-	major facilitator transporter
2361	 65.54	+1	2712358..2713065	-	235	119963855	-	AAur_2468	-	hypothetical protein
2362	 61.47	0	2713246..2714208	-	320	119964032	mutM	AAur_2469	-	formamidopyrimidine-DNA glycosylase
2363	 60.06	0	2714215..2714925	-	236	119962673	-	AAur_2470	-	putative ribonuclease III (RNase III)
2364	 59.31	-1	2714949..2715152	-	67	119963224	rpmF	AAur_2471	-	50S ribosomal protein L32
2365	 57.01	-2	2715186..2715713	-	175	119963528	-	AAur_2472	-	putative proteins of unknown function DUF177
2366	 59.88	0	2715879..2716379	-	166	119960830	coaD	AAur_2473	-	pantetheine-phosphate adenylyltransferase
2367	 61.85	0	2716415..2717680	+	421	119962585	-	AAur_2474	-	aminotransferase classes I and II protein
2368	 64.70	0	2717812..2718471	+	219	119962758	-	AAur_2475	-	hypothetical protein
2369	 60.77	0	2718484..2719077	-	197	119963824	-	AAur_2476	-	putative N6 adenine-specific methylase
2370	 62.01	0	2719084..2721339	-	751	119961125	-	AAur_2477	-	putative ATP-dependent DNA helicase RecG
2371	 62.21	0	2721329..2722405	-	358	119961674	-	AAur_2478	-	dihydroxyacetone kinase family protein
2372	 63.44	0	2722428..2723603	-	391	119964341	thiL	AAur_2479	-	thiamine-monophosphate kinase
2373	 62.35	0	2723726..2724235	+	169	119963481	-	AAur_2480	-	putative lipoprotein
2374	 62.53	0	2724303..2725439	-	378	119961736	ddlA	AAur_2481	-	D-alanine--D-alanine ligase
2375	 61.44	0	2725439..2726491	-	350	119961733	-	AAur_2482	-	glycerol-3-phosphate dehydrogenase
2376	 61.76	0	2726488..2727261	-	257	119962049	-	AAur_2483	-	1-acylglycerol-3-phosphate O-acyltransferase, putayive
2377	 61.54	0	2727273..2728598	-	441	119960578	murA	AAur_2484	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2378	 59.77	0	2728808..2729416	-	202	119963900	leuD	AAur_2485	-	3-isopropylmalate dehydratase, small subunit
2379	 64.19	0	2729426..2730877	-	483	119964518	leuC	AAur_2486	-	3-isopropylmalate dehydratase, large subunit
2380	 65.59	+1	2731023..2731763	+	246	119963369	-	AAur_2487	-	IclR family transcriptional regulator
2381	 60.89	0	2731765..2732301	+	178	119961137	-	AAur_2489	-	putative protein of unknown function (DUF1697)
2382	 64.01	0	2732298..2733917	-	539	119961332	-	AAur_2488	-	putative ATP/GTP-binding protein
2383	 64.25	0	2733914..2735695	-	593	119961211	-	AAur_2490	-	putative ATP/GTP-binding protein
2384	 62.14	0	2736216..2736944	-	242	119963918	-	AAur_2493	-	putative haloacid dehalogenase-like hydrolase
2385	 63.25	0	2736959..2738479	-	506	119961859	gltX	AAur_2494	-	glutamyl-tRNA synthetase
2386	 62.03	0	2738604..2739380	-	258	119960688	-	AAur_2495	-	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
2387	 62.90	0	2739404..2740306	-	300	119964368	-	AAur_2496	-	metallo-beta-lactamase superfamily protein
2388	 62.80	0	2740691..2741803	-	370	119963908	ilvE	AAur_2497	-	branched-chain amino acid aminotransferase
2389	 64.28	0	2741923..2743011	-	362	119961521	leuB	AAur_2498	-	3-isopropylmalate dehydrogenase
2390	 65.06	0	2743111..2744295	+	394	119962142	-	AAur_2499	-	putative signal transduction histidine kinase
2391	 63.03	0	2744299..2745012	+	237	119960873	-	AAur_2500	-	putative two-component system response regulator
2392	 64.78	0	2745137..2745931	+	264	119961307	-	AAur_2501	-	putative ABC transporter, ATP-binding protein
2393	 64.64	0	2745935..2748400	+	821	119961513	-	AAur_2502	-	putative ABC transporter permease protein
2394	 60.77	0	2748514..2750073	-	519	119962681	metG	AAur_2503	-	methionyl-tRNA synthetase
2395	 64.42	0	2750108..2750863	-	251	119962021	-	AAur_2504	-	putative ABC transporter, ATP-binding protein
2396	 62.43	0	2750860..2753712	-	950	119962394	-	AAur_2505	-	permease
2397	 62.41	0	2753880..2755499	-	539	119963300	serA	AAur_2506	-	D-3-phosphoglycerate dehydrogenase
2398	 60.75	0	2755781..2756878	-	365	119962884	ilvC	AAur_2507	-	ketol-acid reductoisomerase
2399	 61.60	0	2756875..2757387	-	170	119961912	ilvH	AAur_2508	-	acetolactate synthase 3 regulatory subunit
2400	 62.26	0	2757390..2759294	-	634	119963186	ilvB	AAur_2509	-	acetolactate synthase 1 catalytic subunit
2401	 62.31	0	2759589..2761310	-	573	161897605	ilvD	AAur_2510	-	dihydroxy-acid dehydratase
2402	 62.17	0	2761434..2762366	-	310	119961231	-	AAur_2511	-	LysR family transcriptional regulator
2403	 65.31	+1	2762527..2763561	+	344	119962836	-	AAur_2512	-	hypothetical protein
2404	 65.57	+1	2763580..2764761	+	393	119962210	-	AAur_2513	-	putative glucose dehydrogenase
2405	 61.11	0	2765319..2765786	-	155	119963751	-	AAur_2516	-	MarR family transcriptional regulator
2406	 58.05	-1	2765811..2766344	+	177	119963026	bcp	AAur_2517	-	bacterioferritin comigratory protein (thioredoxin reductase)
2407	 61.01	0	2766449..2768323	+	624	119960866	-	AAur_2519	-	putative ABC-type dipeptide transport system
2408	 61.38	0	2768397..2769908	+	503	119961900	mqo	AAur_2520	-	malate:quinone oxidoreductase
2409	 62.79	0	2769976..2773200	+	1074	119963000	-	AAur_2521	-	AcrB/AcrD/AcrF family transporter
2410	 61.66	0	2773296..2774474	+	392	119962381	-	AAur_2522	-	putative luciferase-like monooxygenase
2411	 62.77	0	2774474..2774935	+	153	119963673	-	AAur_2523	-	MarR family transcriptional regulator
2412	 61.09	0	2774951..2775793	-	280	119963235	-	AAur_2524	-	putative protease, transglutaminase-like
2413	 67.61	+1	2776279..2776596	+	105	119960492	-	AAur_2525	-	hypothetical protein
2414	 60.99	0	2776785..2777453	+	222	119961402	-	AAur_2527	-	putative protein of unknown function (DUF1684)
2415	 62.88	0	2777450..2778691	-	413	119960953	-	AAur_2526	-	arsenical pump membrane protein
2416	 63.05	0	2778763..2779398	+	211	119964230	-	AAur_2528	-	hypothetical protein
2417	 63.31	0	2779500..2780393	+	297	119963837	-	AAur_2529	-	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
2418	 61.93	0	2780412..2780897	+	161	119962513	-	AAur_2530	-	GtrA-like family protein
2419	 65.90	+1	2780898..2782064	-	388	119962900	-	AAur_2531	-	putative cysteine desulfurase
2420	 64.85	0	2782078..2782956	-	292	119961585	nadC	AAur_2532	-	nicotinate-nucleotide pyrophosphorylase
2421	 66.29	+1	2782949..2784811	-	620	119963355	nadB	AAur_2533	-	L-aspartate oxidase
2422	 63.30	0	2784855..2786162	-	435	119962246	nadA	AAur_2534	-	quinolinate synthetase
2423	 62.64	0	2786159..2786878	-	239	119960617	-	AAur_2535	-	hydrolase, NUDIX family protein
2424	 59.33	-1	2786980..2787456	-	158	119964002	-	AAur_2536	-	AsnC family transcriptional regulator
2425	 64.43	0	2787628..2789013	+	461	119962030	-	AAur_2537	-	putative amino acid permease
2426	 65.64	+1	2789134..2790204	+	356	119960518	-	AAur_2538	-	putative pyruvate dehydrogenase E1 (lipoamide) alpha subunit
2427	 65.65	+1	2790197..2791282	+	361	119961602	-	AAur_2539	-	pyruvate dehydrogenase E1 component, beta subunit
2428	 64.10	0	2791332..2791604	+	90	119962019	-	AAur_2540	-	biotin/lipoyl attachment domain-containing protein
2429	 64.77	0	2791594..2792436	+	280	119960809	-	AAur_2541	-	putative hydrolase
2430	 63.29	0	2792494..2792907	-	137	119961129	-	AAur_2542	-	MarR family transcriptional regulator
2431	 66.53	+1	2792946..2793662	+	238	119964021	-	AAur_2543	-	phosphoribosyl transferase domain-containing protein
2432	 59.63	-1	2793739..2795073	-	444	119961482	-	AAur_2544	-	major facilitator transporter
2433	 67.30	+1	2795161..2795949	+	262	119962746	-	AAur_2545	-	IclR family transcriptional regulator
2434	 62.46	0	2795969..2796871	+	300	119962179	-	AAur_2546	-	hypothetical protein
2435	 63.51	0	2796946..2798718	-	590	119961461	-	AAur_2547	-	putative amino acid permease
2436	 61.17	0	2798812..2799630	+	272	119960891	-	AAur_2548	-	AraC family transcriptional regulator
2437	 63.50	0	2799677..2801287	-	536	119962226	-	AAur_2549	-	putative sulfatase family protein
2438	 62.34	0	2801284..2802138	-	284	119961652	-	AAur_2550	-	putative ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component
2439	 58.97	-1	2802135..2802914	-	259	119961121	-	AAur_2551	-	putative ABC-type nitrate/sulfonate transport system, permease component
2440	 61.89	0	2802914..2803687	-	257	119963289	-	AAur_2552	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
2441	 60.83	0	2803714..2804706	-	330	119962868	-	AAur_2553	-	putative sulfonate ABC transporter, solute-binding protein
2442	 64.72	0	2804766..2806463	-	565	119963092	-	AAur_2554	-	putative amidohydrolase family protein
2443	 62.09	0	2806670..2807281	+	203	119960539	-	AAur_2556	-	TetR family transcriptional regulator
2444	 64.93	0	2807272..2808651	-	459	119962265	-	AAur_2555	-	major facilitator transporter
2445	 63.25	0	2808738..2811752	-	1004	119961889	-	AAur_2557	-	putative nuclease sbcCD subunit C
2446	 61.38	0	2811749..2812939	-	396	119962470	-	AAur_2558	-	putative nuclease SbcCD, D subunit
2447	 61.43	0	2813009..2813944	-	311	119960878	aqpZ	AAur_2559	-	aquaporin Z
2448	 64.06	0	2814105..2814449	-	114	119963621	-	AAur_2560	-	putative integral membrane protein
2449	 61.69	0	2814452..2814853	-	133	119962721	-	AAur_2561	-	putative integral membrane protein
2450	 65.64	+1	2814890..2815960	+	356	119962956	-	AAur_2562	-	putative ADP-ribosylglycohydrolase
2451	 64.15	0	2815968..2816285	-	105	119961798	-	AAur_2563	-	hypothetical protein
2452	 64.19	0	2816423..2817433	-	336	119960742	-	AAur_2564	-	putative DNA polymerase III epsilon subunit
2453	 58.37	-1	2817529..2818215	-	228	119962120	-	AAur_2565	-	putative integral membrane protein
2454	 60.81	0	2818212..2819150	-	312	119961531	-	AAur_2566	-	putative ABC transporter, ATP-binding protein
2455	 59.12	-1	2819147..2819557	-	136	119961475	-	AAur_2567	-	GntR family transcriptional regulator
2456	 59.46	-1	2819664..2820440	+	258	119963902	-	AAur_2568	-	DedA family membrane protein
2457	 65.91	+1	2820512..2821174	-	220	119963765	rdgB	AAur_2569	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
2458	 64.69	0	2821171..2821929	-	252	119962182	rph	AAur_2570	-	ribonuclease PH
2459	 64.16	0	2821985..2822782	-	265	119961693	-	AAur_2571	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.