IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2223	 59.84	0	2554164..2556491	-	775	119961255	-	AAur_2319	-	putative formate dehydrogenase
2224	 63.35	0	2556577..2557329	-	250	119963725	-	AAur_2320	-	hypothetical protein
2225	 61.32	0	2557326..2558129	-	267	119962259	-	AAur_2321	-	hypothetical protein
2226	 64.21	0	2558161..2558649	-	162	119963661	-	AAur_2322	-	putative integral membrane protein
2227	 65.04	0	2558746..2559729	+	327	119961967	-	AAur_2324	-	hypothetical protein
2228	 63.21	0	2559726..2561228	-	500	119964416	-	AAur_2323	-	Rieske family iron-sulfur cluster-binding protein
2229	 63.62	0	2561296..2561787	-	163	119964242	-	AAur_2325	-	hypothetical protein
2230	 60.61	0	2561797..2562936	+	379	119962725	-	AAur_2326	-	putative protein of unknown function (DUF1016)
2231	 60.06	0	2562943..2563971	-	342	119961866	-	AAur_2327	-	putative dienelactone hydrolase (carboxymethylenebutenolidase)
2232	 57.20	-1	2564898..2565932	+	344	119963405	-	AAur_2328	-	putative multidrug ABC transporter, ATP-binding protein
2233	 57.91	-1	2565929..2566807	+	292	119960801	-	AAur_2329	-	putative ABC transporter, integral membrane protein
2234	 62.09	0	2566804..2567721	+	305	119963075	-	AAur_2330	-	putative [acyl-carrier-protein] S-malonyltransferase
2235	 59.69	-1	2567732..2568448	+	238	119961702	-	AAur_2331	-	putative 3-oxoacyl-(acyl carrier protein) reductase
2236	 53.74	-2	2568462..2568755	+	97	119962369	-	AAur_2332	-	putative acyl carrier protein
2237	 62.03	0	2568766..2569218	+	150	119960728	fabZ	AAur_2333	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2238	 61.90	0	2569215..2571374	+	719	119963928	-	AAur_2334	-	acetyltransferase, GNAT family protein
2239	 62.13	0	2571371..2572363	+	330	119964051	-	AAur_2335	-	putative aminomethyltransferase (glycine cleavage system Tprotein)
2240	 62.81	0	2572367..2574754	+	795	119960637	-	AAur_2336	-	3-oxoacyl-[acyl-carrier-protein] synthase
2241	 61.83	0	2574758..2575315	+	185	119961187	-	AAur_2337	-	hypothetical protein
2242	 57.74	-1	2575385..2576359	-	324	119961248	nrdF	AAur_2338	-	ribonucleotide-diphosphate reductase subunit beta
2243	 58.93	-1	2576482..2578665	-	727	119960800	-	AAur_2339	-	ribonucleoside-diphosphate reductase alpha chain
2244	 56.04	-2	2578635..2579114	-	159	119964206	nrdI	AAur_2340	-	nrdI protein
2245	 60.49	0	2579169..2579411	-	80	119963035	-	AAur_2341	-	glutaredoxin-like protein NrdH
2246	 64.08	0	2579806..2580771	+	321	119962591	-	AAur_2342	-	LysR family transcriptional regulator
2247	 57.99	-1	2580822..2581328	+	168	119964279	-	AAur_2343	-	hypothetical protein
2248	 65.67	+1	2581459..2582163	-	234	119963062	-	AAur_2344	-	hypothetical protein
2249	 64.21	0	2582160..2583176	-	338	119962625	-	AAur_2345	-	hypothetical protein
2250	 64.60	0	2583158..2584561	-	467	119963136	-	AAur_2346	-	von Willebrand factor type A domain-containing protein
2251	 62.15	0	2584598..2585527	-	309	119962467	-	AAur_2347	-	hypothetical protein
2252	 61.83	0	2585539..2586633	-	364	119962642	-	AAur_2348	-	MoxR family protein
2253	 60.34	0	2586671..2586907	-	78	119961520	-	AAur_2349	-	hypothetical protein
2254	 58.25	-1	2586917..2587795	-	292	119962114	-	AAur_2350	-	putative ABC-type sugar transport system, permease component
2255	 62.18	0	2587792..2588661	-	289	119964215	-	AAur_2351	-	putative ABC-type sugar transport system, permease component
2256	 60.40	0	2588658..2590046	-	462	119960500	-	AAur_2352	-	extracellular solute-binding domain-containing protein
2257	 63.07	0	2590149..2591399	-	416	119964277	-	AAur_2353	-	ROK family transcriptional regulator
2258	 63.09	0	2591571..2592827	-	418	119962601	-	AAur_2354	-	methyltransferase small subunit
2259	 58.07	-1	2592901..2593284	+	127	119963513	-	AAur_2355	-	cupin domain-containing protein
2260	 60.49	0	2594655..2595059	-	134	119961258	-	AAur_2359	-	putative iojap-like protein
2261	 64.26	0	2595136..2596338	-	400	119961893	-	AAur_2360	-	hypothetical protein
2262	 60.06	0	2596346..2596966	-	206	119962479	nadD	AAur_2361	-	nicotinic acid mononucleotide adenylyltransferase
2263	 61.67	0	2597022..2597261	-	79	119962125	-	AAur_2362	-	hypothetical protein
2264	 63.00	0	2597345..2598709	-	454	119962980	proA	AAur_2363	-	gamma-glutamyl phosphate reductase
2265	 63.71	0	2598706..2599890	-	394	119963531	proB	AAur_2364	-	gamma-glutamyl kinase
2266	 63.26	0	2599877..2601463	-	528	119960850	obgE	AAur_2365	-	GTPase ObgE
2267	 61.36	0	2601619..2601882	-	87	119961276	rpmA	AAur_2366	-	50S ribosomal protein L27
2268	 59.19	-1	2601945..2602265	-	106	119962286	rplU	AAur_2367	-	50S ribosomal protein L21
2269	 62.40	0	2602631..2604178	-	515	119964315	thiD	AAur_2368	-	phosphomethylpyrimidine kinase
2270	 65.74	+1	2604430..2607759	-	1109	119962820	-	AAur_2369	-	ribonuclease Rne/Rng family protein
2271	 59.50	-1	2607900..2608778	+	292	119963697	-	AAur_2370	-	putative integral membrane protein
2272	 63.71	0	2608859..2609365	-	168	119962774	ndk	AAur_2371	-	nucleoside diphosphate kinase
2273	 62.34	0	2609320..2609781	-	153	119964513	-	AAur_2372	-	putative integral membrane protein
2274	 60.89	0	2609774..2611141	-	455	119963929	folC	AAur_2373	-	folylpolyglutamate synthase/dihydrofolate synthase, bifunctional protein
2275	 63.04	0	2611138..2614449	-	1103	119962599	ileS	AAur_2374	-	isoleucyl-tRNA synthetase
2276	 64.29	0	2614745..2615836	+	363	119963710	-	AAur_2375	-	putative endonuclease/exonuclease/phosphatase family protein
2277	 63.76	0	2615843..2616634	-	263	119963118	-	AAur_2376	-	short chain dehydrogenase/reductase family oxidoreductase
2278	 62.81	0	2616707..2619328	+	873	119961299	valS	AAur_2377	-	valyl-tRNA synthetase
2279	 60.88	0	2619665..2620546	+	293	119962635	-	AAur_2378	-	putative formamidopyrimidine-DNA glycosylase
2280	 59.69	-1	2620571..2621215	-	214	119962075	-	AAur_2379	-	DSBA-like thioredoxin domain-containing protein
2281	 59.13	-1	2621308..2622660	-	450	119963777	clpX	AAur_2380	-	ATP-dependent protease ATP-binding subunit
2282	 63.64	0	2622780..2623439	-	219	119961335	-	AAur_2381	-	ATP-dependent Clp protease proteolytic subunit
2283	 60.41	0	2623479..2624117	-	212	119963474	clpP	AAur_2382	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2284	 60.88	0	2624310..2625692	-	460	119961627	tig	AAur_2383	-	trigger factor
2285	 65.20	+1	2626103..2626990	-	295	119962666	-	AAur_2386	-	putative formamidopyrimidine-DNA glycosylase
2286	 61.70	0	2626990..2627472	-	160	119960820	rpiB	AAur_2387	-	ribose-5-phosphate isomerase B
2287	 64.07	0	2627563..2631252	+	1229	119961989	pepN	AAur_2388	-	aminopeptidase N
2288	 61.46	0	2631312..2631791	+	159	119962413	-	AAur_2390	-	putative OsmC-like protein
2289	 64.60	0	2631788..2632801	-	337	119964220	-	AAur_2389	-	putative NAD dependent epimerase/dehydratase family protein
2290	 59.40	-1	2632889..2633590	+	233	119961223	-	AAur_2391	-	hypothetical protein
2291	 63.35	0	2633583..2634065	+	160	119962456	-	AAur_2392	-	hypothetical protein
2292	 66.22	+1	2634069..2634740	-	223	119963219	-	AAur_2393	-	hypothetical protein
2293	 63.02	0	2634804..2635709	+	301	119962013	tesB	AAur_2394	-	acyl-CoA thioesterase II
2294	 60.43	0	2635815..2637497	-	560	119962537	-	AAur_2395	-	putative ABC transporter ATP-binding protein
2295	 62.85	0	2637553..2637840	-	95	119961586	-	AAur_2396	-	hypothetical protein
2296	 65.00	0	2637851..2638090	-	79	119963303	-	AAur_2397	-	hypothetical protein
2297	 60.69	0	2638956..2639507	+	183	119962629	-	AAur_2400	-	putative single-strand binding protein (SSB) (helix-destabilizing protein)
2298	 62.34	0	2639571..2640194	+	207	119963058	-	AAur_2401	-	acetyltransferase, GNAT family protein
2299	 62.89	0	2640210..2640977	-	255	119963760	map	AAur_2402	-	methionine aminopeptidase, type I
2300	 59.39	-1	2641142..2641828	+	228	119964167	-	AAur_2403	-	putative DNA alkylation repair enzyme
2301	 59.03	-1	2641896..2643467	-	523	119960810	-	AAur_2404	-	putative integral membrane protein
2302	 60.69	0	2643599..2644234	+	211	119961384	-	AAur_2405	-	oligoribonuclease
2303	 59.51	-1	2644570..2645142	+	190	119964524	def	AAur_2407	-	peptide deformylase
2304	 61.38	0	2645146..2645958	+	270	119963514	-	AAur_2409	-	hypothetical protein
2305	 62.17	0	2645943..2646743	-	266	119962912	-	AAur_2408	-	hypothetical protein
2306	 56.67	-2	2646866..2647135	-	89	119961619	-	AAur_2410	-	hypothetical protein
2307	 61.29	0	2647149..2648636	-	495	119961007	gap	AAur_2411	-	glyceraldehyde-3-phosphate dehydrogenase
2308	 64.31	0	2649349..2650113	+	254	119960718	-	AAur_2412	-	hypothetical protein
2309	 61.11	0	2650138..2650875	-	245	119964328	-	AAur_2413	-	hypothetical protein
2310	 62.50	0	2650965..2651876	-	303	119963893	-	AAur_2414	-	hypothetical protein
2311	 55.24	-2	2652022..2652546	+	174	119963446	msrA	AAur_2415	-	methionine-S-sulfoxide reductase
2312	 62.50	0	2652613..2653548	+	311	119960535	cysK	AAur_2416	-	cysteine synthase A
2313	 62.22	0	2653590..2654174	+	194	119964345	cysE	AAur_2418	-	serine O-acetyltransferase
2314	 60.24	0	2654171..2655010	-	279	119962984	-	AAur_2417	-	short chain dehydrogenase
2315	 64.10	0	2655117..2656556	-	479	119961574	gnd	AAur_2419	-	6-phosphogluconate dehydrogenase, decarboxylating
2316	 61.46	0	2656544..2657503	+	319	119962160	-	AAur_2420	-	GntR family transcriptional regulator
2317	 64.19	0	2657504..2658553	-	349	119964503	-	AAur_2421	-	putative sorbitol dehydrogenase (L-iditol 2-dehydrogenase)
2318	 63.36	0	2658553..2659338	-	261	119963263	-	AAur_2422	-	gluconate 5-dehydrogenase (5-keto-D-gluconate 5-reductase)
2319	 64.50	0	2659360..2660283	-	307	119960618	-	AAur_2423	-	2-hydroxy-3-oxopropionate reductase
2320	 59.93	0	2660342..2661409	+	355	119964090	-	AAur_2424	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2321	 60.53	0	2661418..2663502	-	694	119961022	-	AAur_2425	-	acyltransferase family protein
2322	 61.22	0	2663669..2665027	-	452	119961327	-	AAur_2426	-	major facilitator transporter
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.