IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 59.84	0	2289217..2292144	+	975	119964255	uvrA	AAur_2080	-	excinuclease ABC subunit A
1992	 57.88	-1	2292258..2292974	+	238	119962529	-	AAur_2081	-	HAD family phosphatase
1993	 59.19	-1	2292961..2293629	+	222	119960862	-	AAur_2082	-	putative 1-acylglycerol-3-phosphate O-acyltransferase
1994	 61.66	0	2293687..2295702	+	671	119961068	uvrC	AAur_2083	-	excinuclease ABC subunit C
1995	 62.99	0	2295834..2296757	+	307	119962185	-	AAur_2084	-	hypothetical protein
1996	 64.90	0	2296757..2297773	+	338	119963374	-	AAur_2085	-	hypothetical protein
1997	 63.30	0	2297783..2298763	+	326	119964489	-	AAur_2086	-	hypothetical protein
1998	 61.16	0	2298925..2299560	+	211	119963018	sodA	AAur_2087	-	superoxide dismutase
1999	 62.41	0	2299832..2300842	+	336	119962038	gap	AAur_2088	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2000	 62.27	0	2300852..2302078	+	408	119963159	pgk	AAur_2089	-	phosphoglycerate kinase
2001	 59.56	-1	2302153..2302968	+	271	119963574	tpiA	AAur_2090	-	triosephosphate isomerase
2002	 56.98	-2	2303005..2303262	+	85	119961323	secG	AAur_2091	-	preprotein translocase subunit SecG
2003	 64.22	0	2303772..2304590	-	272	119961907	pgl	AAur_2092	-	6-phosphogluconolactonase
2004	 65.71	+1	2304580..2305521	-	313	119962494	-	AAur_2093	-	putative opcA protein
2005	 63.84	0	2305518..2307074	-	518	119963766	zwf	AAur_2094	-	glucose-6-phosphate 1-dehydrogenase
2006	 62.38	0	2307090..2308721	-	543	119962640	pgi	AAur_2095	-	glucose-6-phosphate isomerase
2007	 62.65	0	2308728..2309846	-	372	119962579	tal	AAur_2096	-	transaldolase
2008	 64.79	0	2309879..2312065	-	728	119963123	tkt	AAur_2097	-	transketolase
2009	 62.10	0	2312434..2313396	+	320	119962469	cyoE	AAur_2098	-	protoheme IX farnesyltransferase
2010	 63.35	0	2313540..2314142	-	200	119961296	-	AAur_2099	-	hypothetical protein
2011	 62.75	0	2314171..2315115	-	314	119963685	-	AAur_2100	-	putative cytochrome oxidase assembly protein
2012	 64.18	0	2315162..2315926	-	254	119962465	-	AAur_2101	-	putative ABC transporter protein
2013	 61.80	0	2315923..2316888	-	321	119964430	-	AAur_2102	-	putative ABC transporter, ATP-binding protein
2014	 64.26	0	2316989..2317819	+	276	119963961	-	AAur_2103	-	putative DNA-binding transcriptional regulator
2015	 59.97	0	2317819..2319282	+	487	119963028	sufB	AAur_2104	-	FeS assembly protein SufB
2016	 62.79	0	2319285..2320598	+	437	119962266	sufD	AAur_2105	-	FeS assembly protein SufD
2017	 59.38	-1	2320620..2320976	+	118	119962306	-	AAur_2106	-	ring hydroxylating dioxygenase alpha subunit
2018	 61.58	0	2321020..2321805	+	261	119964304	sufC	AAur_2107	-	FeS assembly ATPase SufC
2019	 60.96	0	2321819..2322151	+	110	119962191	-	AAur_2108	-	hypothetical protein
2020	 61.98	0	2322267..2323247	-	326	119964514	-	AAur_2109	-	putative zinc metallopeptidase
2021	 63.10	0	2323192..2324622	+	476	119961170	-	AAur_2110	-	AMP-binding domain-containing protein
2022	 65.27	+1	2324549..2325835	+	428	119961348	-	AAur_2112	-	putative beta-ketoadipyl-CoA thiolase
2023	 64.60	0	2325832..2326461	-	209	119962197	-	AAur_2111	-	putative cobalt transport protein
2024	 62.00	0	2326458..2327207	-	249	119961519	-	AAur_2113	-	putative ABC transporter, ATP-binding protein
2025	 61.89	0	2327225..2328124	-	299	119963298	-	AAur_2114	-	putative BioY family protein
2026	 61.98	0	2328130..2329728	+	532	119960893	-	AAur_2115	-	ABC transporter, ATP-binding protein‎‎
2027	 61.11	0	2329737..2330222	-	161	119964039	-	AAur_2116	-	putative ybaK/ebsC protein
2028	 61.48	0	2330206..2331072	-	288	119961455	-	AAur_2117	-	putative lipoprotein
2029	 62.68	0	2331073..2331348	-	91	119963148	-	AAur_2118	-	hypothetical protein
2030	 59.84	0	2331345..2331842	-	165	119962608	-	AAur_2119	-	hypothetical protein
2031	 60.49	0	2331912..2332721	+	269	119961965	fabG	AAur_2120	-	3-oxoacyl-(acyl-carrier-protein) reductase
2032	 63.21	0	2332838..2333590	+	250	119963423	-	AAur_2121	-	short chain dehydrogenase
2033	 57.75	-1	2333932..2335434	+	500	119962411	rbsA	AAur_2122	-	ribose ABC transporter, ATP-binding protein
2034	 56.57	-2	2335515..2336108	-	197	119961070	-	AAur_2123	-	hypothetical protein
2035	 62.64	0	2336403..2337296	-	297	119963424	serB	AAur_2124	-	phosphoserine phosphatase SerB
2036	 62.01	0	2337377..2338192	+	271	119963992	-	AAur_2125	-	putative ABC transporter, ATP-binding protein
2037	 60.43	0	2338212..2338997	+	261	119962933	-	AAur_2126	-	putative integral membrane protein
2038	 62.72	0	2339005..2339814	+	269	119963510	-	AAur_2127	-	TrmH family RNA methyltransferase
2039	 55.14	-2	2339815..2340213	+	132	119962116	rpmE	AAur_2128	-	ribosomal protein L31
2040	 61.57	0	2340263..2341399	+	378	119961540	-	AAur_2129	-	putative lipoate-protein ligase
2041	 62.71	0	2341410..2344013	-	867	119963796	pepN	AAur_2130	-	aminopeptidase N
2042	 64.86	0	2344018..2345067	-	349	119964080	-	AAur_2131	-	putative integral membrane protein
2043	 62.77	0	2345142..2346734	+	530	119960999	-	AAur_2132	-	hypothetical protein
2044	 60.00	0	2346667..2347716	+	349	119960946	-	AAur_2133	-	hypothetical protein
2045	 61.38	0	2347713..2348564	+	283	119962352	-	AAur_2134	-	putative protease, transglutaminase-like
2046	 61.91	0	2348637..2350088	-	483	119961899	-	AAur_2135	-	putative oxidoreductase
2047	 60.30	0	2350153..2351565	-	470	119962871	glgC	AAur_2136	-	glucose-1-phosphate adenylyltransferase
2048	 63.85	0	2351650..2352855	+	401	119964256	glgA	AAur_2137	-	glycogen synthase
2049	 63.49	0	2352999..2355104	-	701	119963632	-	AAur_2138	-	putative acyl-CoA oxidase
2050	 62.75	0	2356016..2357290	+	424	119963451	-	AAur_2140	-	acetyl-CoA acetyltransferase
2051	 64.22	0	2357253..2358641	+	462	119961993	fabG	AAur_2141	-	3-ketoacyl-(acyl-carrier-protein) reductase
2052	 63.00	0	2358638..2359564	+	308	119963292	-	AAur_2142	-	MaoC-like domain-containing protein
2053	 61.70	0	2360024..2361373	+	449	119963841	-	AAur_2144	-	hypothetical protein
2054	 62.09	0	2361402..2362559	+	385	119960653	-	AAur_2145	-	putative acyl-CoA dehydrogenase
2055	 60.68	0	2362570..2362803	-	77	119963631	-	AAur_2146	-	hypothetical protein
2056	 55.43	-2	2362843..2363100	+	85	119961204	-	AAur_2147	-	hypothetical protein
2057	 60.68	0	2363109..2363225	+	38	119961523	-	AAur_2148	-	hypothetical protein
2058	 62.38	0	2363368..2365047	+	559	119962112	-	AAur_2149	-	putative glucosyltransferase
2059	 61.44	0	2365105..2366214	+	369	119962575	-	AAur_2150	-	oxidoreductase family protein
2060	 61.08	0	2366211..2367230	+	339	119963758	-	AAur_2151	-	putative UDP-glucose 4-epimerase
2061	 64.00	0	2367227..2368390	+	387	119960908	-	AAur_2152	-	putative DegT/DnrJ/EryC1/StrS aminotransferase family protein
2062	 63.80	0	2368387..2369049	+	220	119964404	-	AAur_2153	-	putative acetyltransferase protein
2063	 61.72	0	2368983..2370236	+	417	119961518	-	AAur_2154	-	glycosyl transferase group 1 family protein
2064	 61.46	0	2370238..2372793	+	851	119961451	-	AAur_2155	-	glycosyl transferase/polysaccharide biosynthesis domain-containing protein
2065	 59.66	-1	2372897..2373709	+	270	119962773	-	AAur_2156	-	hypothetical protein
2066	 60.82	0	2373706..2374953	+	415	119962390	-	AAur_2157	-	hypothetical protein
2067	 59.00	-1	2374938..2376398	+	486	119961983	-	AAur_2158	-	putative O-antigen polymerase family protein
2068	 56.77	-2	2376386..2377264	+	292	119961485	-	AAur_2159	-	chain length determinant domain-containing protein
2069	 59.72	-1	2377323..2378588	+	421	119964038	-	AAur_2160	-	putative glycosyl transferase, group 1 family protein
2070	 60.60	0	2378585..2379919	+	444	119963195	-	AAur_2161	-	hypothetical protein
2071	 62.84	0	2379920..2380756	-	278	119961821	-	AAur_2162	-	glycosyl transferase group 2 family protein
2072	 63.82	0	2380753..2382681	-	642	119963389	-	AAur_2163	-	putative glycosyl transferase, WecB/TagA/CpsF family protein
2073	 62.06	0	2382843..2384252	-	469	119962499	rfbC/rfbD	AAur_2164	-	dTDP-4-keto-L-rhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase
2074	 57.01	-2	2384256..2385260	-	334	119962227	rfbB	AAur_2165	-	dTDP-glucose 4,6-dehydratase
2075	 57.55	-1	2385308..2386174	+	288	119961639	rfbA	AAur_2166	-	glucose-1-phosphate thymidylyltransferase
2076	 62.27	0	2386181..2387113	-	310	119963113	-	AAur_2167	-	aldo/keto reductase family oxidoreductase
2077	 59.83	0	2387166..2387999	+	277	119964101	-	AAur_2168	-	undecaprenyl pyrophosphate phosphatase
2078	 63.30	0	2388015..2389292	+	425	119964010	-	AAur_2169	-	cysteinyl-tRNA synthetase
2079	 61.59	0	2389364..2390269	-	301	119961406	-	AAur_2170	-	hypothetical protein
2080	 64.08	0	2390300..2391112	+	270	119960854	-	AAur_2171	-	putative haloacid dehalogenase-like hydrolase
2081	 61.18	0	2391113..2392279	+	388	119960770	-	AAur_2172	-	putative zinc metallopeptidase family protein
2082	 64.34	0	2392301..2393461	+	386	119964362	-	AAur_2173	-	hypothetical protein
2083	 60.31	0	2393559..2395367	+	602	119961474	-	AAur_2174	-	ATPase
2084	 64.22	0	2395364..2397037	+	557	119962140	-	AAur_2175	-	putative proteasome component
2085	 61.49	0	2397105..2397278	+	57	119962925	-	AAur_2176	-	hypothetical protein
2086	 62.15	0	2397275..2398249	+	324	119962637	-	AAur_2177	-	putative 20S proteasome beta-subunit precursor
2087	 60.22	0	2398215..2398958	+	247	119963080	-	AAur_2178	-	putative 20S proteasome alpha-subunit
2088	 59.56	-1	2398960..2400324	+	454	119964245	-	AAur_2179	-	putative proteasome component
2089	 60.63	0	2400370..2401380	+	336	119961909	-	AAur_2180	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
2090	 64.65	0	2401454..2401849	+	131	119963496	-	AAur_2181	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.