IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1795	 61.64	0	2053662..2053979	+	105	119960511	-	AAur_1879	-	putative HspR protein-like protein
1796	 62.27	0	2053976..2056612	+	878	119963675	clpB	AAur_1880	-	ATP-dependent chaperone protein ClpB
1797	 63.40	0	2056609..2057037	+	142	119963465	trx	AAur_1881	-	thioredoxin
1798	 63.04	0	2057374..2057952	+	192	119963597	-	AAur_1882	-	hypothetical protein
1799	 62.84	0	2058317..2059048	+	243	119962329	-	AAur_1883	-	hypothetical protein
1800	 57.43	-1	2059139..2060167	-	342	119960848	-	AAur_1884	-	transcriptional regulator
1801	 61.07	0	2060451..2061719	-	422	119962581	-	AAur_1885	-	ROK family transcriptional regulator
1802	 61.83	0	2061972..2063108	+	378	119963899	-	AAur_1886	-	oxidoreductase family protein
1803	 59.96	0	2063105..2064148	+	347	119961817	-	AAur_1887	-	oxidoreductase family protein
1804	 62.54	0	2064193..2065332	+	379	119963850	rbsC	AAur_1888	-	ribose ABC transporter permease
1805	 59.17	-1	2065398..2066384	+	328	119963416	rbsB	AAur_1889	-	D-ribose-binding protein
1806	 60.21	0	2066462..2067313	+	283	119962979	-	AAur_1890	-	putative sugar phosphate isomerase/epimerase
1807	 60.00	0	2067306..2068160	+	284	119961522	-	AAur_1891	-	putative sugar phosphate isomerase/epimerase
1808	 59.85	0	2068157..2069653	+	498	119961069	-	AAur_1892	-	putative sugar ABC transporter, ATP-binding protein
1809	 65.58	+1	2069680..2070693	+	337	119963143	-	AAur_1893	-	hypothetical protein
1810	 61.85	0	2071103..2073511	+	802	119960711	ppsA	AAur_1894	-	phosphoenolpyruvate synthase
1811	 63.60	0	2073545..2074393	+	282	119964127	-	AAur_1895	-	hypothetical protein
1812	 62.06	0	2075044..2075412	+	122	119963070	-	AAur_1896	-	death-on-curing protein
1813	 60.99	0	2075430..2076416	-	328	119963002	-	AAur_1897	-	AraC family transcriptional regulator
1814	 60.94	0	2077637..2078737	+	366	119962061	oxdA	AAur_1899	-	aldoxime dehydratase
1815	 65.87	+1	2078828..2081083	+	751	119961754	-	AAur_1900	-	glycosyl hydrolase family protein
1816	 63.46	0	2081105..2082568	-	487	119963205	-	AAur_1901	-	polysaccharide biosynthesis protein
1817	 56.70	-2	2082714..2083616	-	300	119962156	-	AAur_1902	-	diacylglycerol kinase catalytic subunit
1818	 64.94	0	2083982..2085025	-	347	119960572	tdh	AAur_1903	-	L-threonine 3-dehydrogenase
1819	 66.29	+1	2085068..2086411	-	447	119961747	-	AAur_1904	-	ygbK domain-containing protein
1820	 64.81	0	2086368..2087663	-	431	119961212	-	AAur_1905	-	ribulose bisphosphate carboxylase, large subunit,-like protein
1821	 63.70	0	2087672..2088682	-	336	119963909	kdgT	AAur_1906	-	2-keto-3-deoxygluconate permease
1822	 62.73	0	2088754..2089692	+	312	119962791	-	AAur_1907	-	GntR family transcriptional regulator
1823	 60.13	0	2090381..2093059	+	892	119961704	-	AAur_1908	-	Cna B domain-containing protein
1824	 60.26	0	2093146..2094627	+	493	119963871	-	AAur_1909	-	putative surface protein
1825	 57.96	-1	2094741..2095670	+	309	119960651	-	AAur_1910	-	putative sortase family protein
1826	 60.38	0	2095749..2097419	-	556	119960594	-	AAur_1911	-	RNA polymerase sigma factor domain-containing protein
1827	 63.02	0	2097831..2100215	-	794	119961028	aceE	AAur_1912	-	pyruvate dehydrogenase E1 component
1828	 59.54	-1	2101535..2102629	-	364	119964018	-	AAur_1914	-	L-allo-threonine aldolase
1829	 59.95	0	2102626..2103786	-	386	119962845	-	AAur_1915	-	putative ABC-transporter, ATP-binding protein
1830	 62.04	0	2103722..2105473	-	583	119964075	-	AAur_1916	-	putative ABC transporter permease protein
1831	 59.80	0	2105470..2106780	-	436	119962630	-	AAur_1917	-	extracellular solute-binding domain-containing protein
1832	 59.22	-1	2108368..2109723	+	451	119962373	-	AAur_1919	-	major facilitator transporter
1833	 59.31	-1	2110825..2111694	+	289	119962290	-	AAur_1921	-	putative dehydrogenase protein
1834	 57.87	-1	2111701..2112234	+	177	119962060	-	AAur_1922	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1835	 61.97	0	2112231..2114570	+	779	119963730	-	AAur_1923	-	aldehyde oxidase and xanthine dehydrogenase domain-containing protein
1836	 60.47	0	2114557..2115717	+	386	119961782	-	AAur_1924	-	putative xanthine dehydrogenase accessory factor
1837	 61.09	0	2115866..2117353	+	495	119962379	-	AAur_1925	-	aldehyde dehydrogenase (NAD) family protein
1838	 60.58	0	2117396..2117740	+	114	119964399	-	AAur_1926	-	endoribonuclease L-PSP family protein
1839	 59.18	-1	2117747..2118748	+	333	119960753	-	AAur_1927	-	putative iron-sulfur oxidoreductase
1840	 60.88	0	2118772..2119773	+	333	119963757	-	AAur_1928	-	putative glyoxalase family protein
1841	 63.80	0	2119718..2120590	+	290	119964164	-	AAur_1929	-	hydrolase alpha/beta fold domain-containing protein
1842	 62.77	0	2120587..2121330	+	247	119961127	fabG	AAur_1930	-	3-ketoacyl-(acyl-carrier-protein) reductase
1843	 62.23	0	2121404..2122192	+	262	119960695	-	AAur_1931	-	short chain dehydrogenase
1844	 61.99	0	2122226..2123893	+	555	119962655	-	AAur_1932	-	hypothetical protein
1845	 61.76	0	2123823..2124536	+	237	119963578	-	AAur_1933	-	hypothetical protein
1846	 58.90	-1	2124529..2124747	+	72	119962747	-	AAur_1934	-	hypothetical protein
1847	 59.60	-1	2124751..2125854	+	367	119964198	-	AAur_1935	-	Rieske family iron-sulfur cluster-binding protein
1848	 57.61	-1	2125980..2126498	-	172	119963560	-	AAur_1936	-	cupin domain-containing protein
1849	 56.20	-2	2126633..2127253	+	206	119960971	-	AAur_1937	-	MarR family transcriptional regulator
1850	 60.90	0	2127303..2128100	+	265	119962461	-	AAur_1938	-	homoserine dehydrogenase NAD binding subunit
1851	 65.08	0	2128198..2129517	-	439	119963040	-	AAur_1939	-	hypothetical protein
1852	 62.55	0	2129643..2131172	+	509	119963607	-	AAur_1940	-	putative regulatory protein
1853	 64.23	0	2131264..2132820	-	518	119964238	mmsA	AAur_1941	-	methylmalonate-semialdehyde dehydrogenase
1854	 63.23	0	2133019..2134443	-	474	119960900	-	AAur_1942	-	mycothione/glutathione reductase
1855	 60.32	0	2134499..2134687	-	62	119961936	-	AAur_1943	-	hypothetical protein
1856	 63.02	0	2134718..2135485	-	255	119962509	-	AAur_1944	-	phosphatidylinositol 3- and 4-kinase family protein
1857	 62.34	0	2135485..2136039	-	184	119962557	-	AAur_1945	-	hypothetical protein
1858	 64.94	0	2136064..2136756	-	230	119963105	-	AAur_1946	-	phosphoglycerate mutase family protein
1859	 65.54	+1	2136783..2137850	+	355	119963038	-	AAur_1947	-	ATPase
1860	 65.10	0	2137964..2138923	-	319	119962903	-	AAur_1948	-	D-isomer specific 2-hydroxyacid dehydrogenases family protein
1861	 62.03	0	2138920..2140149	-	409	119962115	-	AAur_1949	-	aspartate aminotransferase
1862	 62.93	0	2140561..2141577	-	338	119961566	-	AAur_1950	-	putative protein of unknown function (DUF808)
1863	 59.77	0	2141750..2142778	-	342	119960676	-	AAur_1951	-	putative DJ-1/PfpI family protein
1864	 60.30	0	2143035..2144102	+	355	119961337	rbsR	AAur_1952	-	ribose operon transcriptional regulator
1865	 60.16	0	2144180..2145853	+	557	119962555	-	AAur_1953	-	putative ABC-type dipeptide transport system
1866	 62.68	0	2145979..2146956	+	325	119964122	-	AAur_1954	-	putative ABC-type dipeptide/oligopeptide transport system, permease component
1867	 61.24	0	2146967..2147905	+	312	119962945	-	AAur_1955	-	putative ABC-type dipeptide/oligopeptide transport systems, permease components
1868	 62.41	0	2147902..2148864	+	320	119963809	-	AAur_1956	-	putative oligopeptide/dipeptide ABC transporter, ATP-binding protein
1869	 64.93	0	2148861..2149955	+	364	119964398	-	AAur_1957	-	putative ABC-type oligopeptide transport system, ATPase component
1870	 63.25	0	2149952..2151502	+	516	119962384	-	AAur_1958	-	glycoside hydrolase family protein
1871	 62.33	0	2151499..2153088	+	529	119961792	-	AAur_1959	-	glycoside hydrolase family protein
1872	 61.06	0	2153116..2154060	+	314	119962096	-	AAur_1960	-	fructokinase
1873	 62.96	0	2154065..2154766	-	233	119960611	-	AAur_1961	-	putative ABC transporter, ATP-binding protein
1874	 62.73	0	2154725..2155690	+	321	119962916	mntB	AAur_1962	-	ABC-type Mn2+ transport systems, permease component
1875	 63.59	0	2155693..2156961	+	422	119962560	-	AAur_1963	-	putative lipoprotein
1876	 63.82	0	2156958..2157869	+	303	119963110	-	AAur_1964	-	putative solute binding protein
1877	 60.88	0	2157920..2159164	+	414	119963825	-	AAur_1965	-	putative lipoprotein
1878	 63.91	0	2159334..2160782	-	482	119962970	-	AAur_1966	-	putative dicarboxylate carrier protein
1879	 63.14	0	2160795..2161985	-	396	119962135	-	AAur_1967	-	putative protein of unknown function (DUF453)
1880	 60.52	0	2162126..2163085	+	319	119962646	-	AAur_1968	-	LysR family transcriptional regulator
1881	 60.94	0	2163228..2164817	+	529	119961163	-	AAur_1969	-	putative ABC-type dipeptide/oligopeptide transport system
1882	 61.57	0	2164848..2165789	+	313	119963990	-	AAur_1970	-	putative ABC-type dipeptide/oligopeptide transport systems, permease components
1883	 65.01	0	2165773..2166618	+	281	119964425	-	AAur_1971	-	putative ABC-type dipeptide/oligopeptide transport systems, permease components
1884	 62.42	0	2166593..2168194	+	533	119963178	-	AAur_1972	-	putative ABC transporter, ATP-binding protein
1885	 60.51	0	2168234..2169451	-	405	119962362	-	AAur_1973	-	putative delta 6 fatty acid desaturase
1886	 61.06	0	2169491..2170204	-	237	119961910	-	AAur_1974	-	ANTAR domain-containing protein
1887	 64.77	0	2170214..2170897	-	227	119961418	-	AAur_1975	-	hypothetical protein
1888	 58.77	-1	2171108..2171512	+	134	119960949	-	AAur_1976	-	tautomerase enzyme family protein
1889	 64.00	0	2171609..2172697	+	362	119963596	-	AAur_1977	-	putative myo-inositol catabolism protein iolC
1890	 63.69	0	2172694..2173668	+	324	119961041	-	AAur_1978	-	hypothetical protein
1891	 63.33	0	2173675..2175621	+	648	119961023	-	AAur_1979	-	putative acetolactate synthase
1892	 64.68	0	2175667..2177178	+	503	119963377	mmsA	AAur_1980	-	methylmalonate-semialdehyde dehydrogenase
1893	 60.24	0	2177261..2178178	+	305	119962323	-	AAur_1981	-	putative myo-inositol catabolism protein
1894	 63.12	0	2178221..2179234	+	337	119962730	-	AAur_1982	-	putative myo-inositol dehydrogenase
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.