IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1741	 63.84	0	1989984..1990904	+	306	119963872	fmt	AAur_1822	-	methionyl-tRNA formyltransferase
1742	 64.93	0	1990901..1992451	+	516	119961729	-	AAur_1823	-	ribosomal RNA small subunit methyltransferase B
1743	 62.67	0	1992507..1993181	+	224	119962223	rpe	AAur_1824	-	ribulose-phosphate 3-epimerase
1744	 62.84	0	1993504..1994208	+	234	119960625	-	AAur_1825	-	putative nicotinamide mononucleotide transporter PnuC
1745	 64.44	0	1994205..1995326	+	373	119961067	ribD	AAur_1826	-	riboflavin biosynthesis protein RibD
1746	 63.65	0	1995326..1995955	+	209	119963571	ribE	AAur_1827	-	riboflavin synthase subunit alpha
1747	 66.26	+1	1997365..1997850	+	161	119964428	ribH	AAur_1829	-	riboflavin synthase subunit beta
1748	 59.65	-1	1997878..1998219	+	113	119962879	hisE	AAur_1830	-	phosphoribosyl-ATP pyrophosphatase
1749	 62.83	0	1998304..1999164	+	286	119962724	hisG	AAur_1831	-	ATP phosphoribosyltransferase
1750	 63.58	0	1999225..2000001	+	258	119962020	hisF	AAur_1832	-	imidazoleglycerol phosphate synthase, cyclase subunit
1751	 63.35	0	2000075..2000737	-	220	119962417	-	AAur_1833	-	hypothetical protein
1752	 63.07	0	2000809..2001225	+	138	119964213	hisI	AAur_1834	-	phosphoribosyl-AMP cyclohydrolase
1753	 63.19	0	2001284..2002867	+	527	119961971	trpE	AAur_1835	-	anthranilate synthase component I
1754	 65.02	0	2002864..2003469	+	201	119961239	-	AAur_1836	-	hypothetical protein
1755	 60.44	0	2003602..2003874	+	90	119960827	-	AAur_1837	-	putative integral membrane protein
1756	 62.15	0	2003877..2004695	+	272	119964189	trpC	AAur_1838	-	indole-3-glycerol-phosphate synthase
1757	 62.12	0	2004801..2006186	+	461	119962170	trpB	AAur_1839	-	tryptophan synthase subunit beta
1758	 64.33	0	2006186..2006998	+	270	119961937	trpA	AAur_1840	-	tryptophan synthase subunit alpha
1759	 61.17	0	2007047..2008174	+	375	119963234	lgt	AAur_1841	-	prolipoprotein diacylglyceryl transferase
1760	 63.24	0	2008434..2013047	+	1537	119962734	gltB	AAur_1842	-	glutamate synthase large subunit
1761	 63.31	0	2013040..2014497	+	485	119963635	gltD	AAur_1843	-	glutamate synthase subunit beta
1762	 63.19	0	2014552..2016045	+	497	119962445	pyk	AAur_1844	-	pyruvate kinase
1763	 61.39	0	2016194..2016799	-	201	119962184	-	AAur_1845	-	two-component system response regulator
1764	 63.04	0	2017847..2017984	-	45	119964112	-	AAur_1847	-	hypothetical protein
1765	 61.71	0	2018415..2020796	+	793	119962524	xfp	AAur_1848	-	putative phosphoketolase
1766	 58.87	-1	2020921..2021292	+	123	119963277	-	AAur_1849	-	hypothetical protein
1767	 63.43	0	2021341..2022825	-	494	119961550	-	AAur_1850	-	putative multicopper oxidase family protein
1768	 62.94	0	2023485..2023913	+	142	119960660	trx	AAur_1852	-	thioredoxin
1769	 59.45	-1	2025161..2026324	-	387	119960881	-	AAur_1853	-	putative low temperature requirement protein LtrA
1770	 65.26	+1	2026476..2027327	-	283	119963585	-	AAur_1854	-	hypothetical protein
1771	 64.92	0	2027905..2028477	-	190	119962985	-	AAur_1855	-	flavin reductase-like domain-containing protein
1772	 61.22	0	2028480..2029526	-	348	119964365	metE	AAur_1856	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1773	 61.33	0	2029547..2030539	-	330	119963791	-	AAur_1857	-	hypothetical protein
1774	 60.93	0	2030660..2031601	+	313	119961202	-	AAur_1858	-	LysR family transcriptional regulator
1775	 62.16	0	2032124..2032234	+	36	119960650	-	AAur_1859	-	hypothetical protein
1776	 63.04	0	2032231..2032506	+	91	119962123	-	AAur_1860	-	hypothetical protein
1777	 62.35	0	2033068..2033901	+	277	119961559	-	AAur_1861	-	aldo/keto reductase family oxidoreductase
1778	 59.29	-1	2034162..2034473	+	103	119963117	-	AAur_1862	-	hypothetical protein
1779	 61.79	0	2034538..2035173	+	211	119962869	-	AAur_1863	-	hypothetical protein
1780	 60.59	0	2035317..2037539	+	740	119964511	-	AAur_1864	-	catalase
1781	 66.16	+1	2037614..2038201	-	195	119960907	-	AAur_1865	-	hypothetical protein
1782	 61.10	0	2038213..2039361	-	382	119961326	-	AAur_1866	-	putative alcohol dehydrogenase
1783	 61.27	0	2039416..2040564	-	382	119962285	fdhA	AAur_1867	-	glutathione-independent formaldehyde dehydrogenase
1784	 59.44	-1	2041284..2041463	-	59	119963232	-	AAur_1868	-	hypothetical protein
1785	 60.84	0	2042155..2043252	+	365	119963672	-	AAur_1869	-	EAL domain-containing protein
1786	 57.66	-1	2043407..2044450	-	347	119961631	-	AAur_1870	-	hypothetical protein
1787	 60.42	0	2044647..2045735	-	362	119961117	-	AAur_1871	-	hypothetical protein
1788	 61.90	0	2045872..2047485	-	537	119962714	-	AAur_1872	-	hypothetical protein
1789	 63.38	0	2047761..2049527	-	588	119963959	-	AAur_1873	-	putative thioredoxin reductase
1790	 60.23	0	2049551..2049814	-	87	119960882	-	AAur_1874	-	hypothetical protein
1791	 59.38	-1	2049856..2049951	+	31	119961042	-	AAur_1875	-	hypothetical protein
1792	 60.14	0	2050282..2052180	+	632	119962147	dnaK	AAur_1876	-	chaperone protein DnaK
1793	 66.11	+1	2052189..2052731	+	180	119963452	grpE	AAur_1877	-	co-chaperone GrpE
1794	 67.83	+2	2052724..2053665	+	313	119961209	-	AAur_1878	-	DnaJ domain-containing protein
1795	 61.64	0	2053662..2053979	+	105	119960511	-	AAur_1879	-	putative HspR protein-like protein
1796	 62.27	0	2053976..2056612	+	878	119963675	clpB	AAur_1880	-	ATP-dependent chaperone protein ClpB
1797	 63.40	0	2056609..2057037	+	142	119963465	trx	AAur_1881	-	thioredoxin
1798	 63.04	0	2057374..2057952	+	192	119963597	-	AAur_1882	-	hypothetical protein
1799	 62.84	0	2058317..2059048	+	243	119962329	-	AAur_1883	-	hypothetical protein
1800	 57.43	-1	2059139..2060167	-	342	119960848	-	AAur_1884	-	transcriptional regulator
1801	 61.07	0	2060451..2061719	-	422	119962581	-	AAur_1885	-	ROK family transcriptional regulator
1802	 61.83	0	2061972..2063108	+	378	119963899	-	AAur_1886	-	oxidoreductase family protein
1803	 59.96	0	2063105..2064148	+	347	119961817	-	AAur_1887	-	oxidoreductase family protein
1804	 62.54	0	2064193..2065332	+	379	119963850	rbsC	AAur_1888	-	ribose ABC transporter permease
1805	 59.17	-1	2065398..2066384	+	328	119963416	rbsB	AAur_1889	-	D-ribose-binding protein
1806	 60.21	0	2066462..2067313	+	283	119962979	-	AAur_1890	-	putative sugar phosphate isomerase/epimerase
1807	 60.00	0	2067306..2068160	+	284	119961522	-	AAur_1891	-	putative sugar phosphate isomerase/epimerase
1808	 59.85	0	2068157..2069653	+	498	119961069	-	AAur_1892	-	putative sugar ABC transporter, ATP-binding protein
1809	 65.58	+1	2069680..2070693	+	337	119963143	-	AAur_1893	-	hypothetical protein
1810	 61.85	0	2071103..2073511	+	802	119960711	ppsA	AAur_1894	-	phosphoenolpyruvate synthase
1811	 63.60	0	2073545..2074393	+	282	119964127	-	AAur_1895	-	hypothetical protein
1812	 62.06	0	2075044..2075412	+	122	119963070	-	AAur_1896	-	death-on-curing protein
1813	 60.99	0	2075430..2076416	-	328	119963002	-	AAur_1897	-	AraC family transcriptional regulator
1814	 60.94	0	2077637..2078737	+	366	119962061	oxdA	AAur_1899	-	aldoxime dehydratase
1815	 65.87	+1	2078828..2081083	+	751	119961754	-	AAur_1900	-	glycosyl hydrolase family protein
1816	 63.46	0	2081105..2082568	-	487	119963205	-	AAur_1901	-	polysaccharide biosynthesis protein
1817	 56.70	-2	2082714..2083616	-	300	119962156	-	AAur_1902	-	diacylglycerol kinase catalytic subunit
1818	 64.94	0	2083982..2085025	-	347	119960572	tdh	AAur_1903	-	L-threonine 3-dehydrogenase
1819	 66.29	+1	2085068..2086411	-	447	119961747	-	AAur_1904	-	ygbK domain-containing protein
1820	 64.81	0	2086368..2087663	-	431	119961212	-	AAur_1905	-	ribulose bisphosphate carboxylase, large subunit,-like protein
1821	 63.70	0	2087672..2088682	-	336	119963909	kdgT	AAur_1906	-	2-keto-3-deoxygluconate permease
1822	 62.73	0	2088754..2089692	+	312	119962791	-	AAur_1907	-	GntR family transcriptional regulator
1823	 60.13	0	2090381..2093059	+	892	119961704	-	AAur_1908	-	Cna B domain-containing protein
1824	 60.26	0	2093146..2094627	+	493	119963871	-	AAur_1909	-	putative surface protein
1825	 57.96	-1	2094741..2095670	+	309	119960651	-	AAur_1910	-	putative sortase family protein
1826	 60.38	0	2095749..2097419	-	556	119960594	-	AAur_1911	-	RNA polymerase sigma factor domain-containing protein
1827	 63.02	0	2097831..2100215	-	794	119961028	aceE	AAur_1912	-	pyruvate dehydrogenase E1 component
1828	 59.54	-1	2101535..2102629	-	364	119964018	-	AAur_1914	-	L-allo-threonine aldolase
1829	 59.95	0	2102626..2103786	-	386	119962845	-	AAur_1915	-	putative ABC-transporter, ATP-binding protein
1830	 62.04	0	2103722..2105473	-	583	119964075	-	AAur_1916	-	putative ABC transporter permease protein
1831	 59.80	0	2105470..2106780	-	436	119962630	-	AAur_1917	-	extracellular solute-binding domain-containing protein
1832	 59.22	-1	2108368..2109723	+	451	119962373	-	AAur_1919	-	major facilitator transporter
1833	 59.31	-1	2110825..2111694	+	289	119962290	-	AAur_1921	-	putative dehydrogenase protein
1834	 57.87	-1	2111701..2112234	+	177	119962060	-	AAur_1922	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1835	 61.97	0	2112231..2114570	+	779	119963730	-	AAur_1923	-	aldehyde oxidase and xanthine dehydrogenase domain-containing protein
1836	 60.47	0	2114557..2115717	+	386	119961782	-	AAur_1924	-	putative xanthine dehydrogenase accessory factor
1837	 61.09	0	2115866..2117353	+	495	119962379	-	AAur_1925	-	aldehyde dehydrogenase (NAD) family protein
1838	 60.58	0	2117396..2117740	+	114	119964399	-	AAur_1926	-	endoribonuclease L-PSP family protein
1839	 59.18	-1	2117747..2118748	+	333	119960753	-	AAur_1927	-	putative iron-sulfur oxidoreductase
1840	 60.88	0	2118772..2119773	+	333	119963757	-	AAur_1928	-	putative glyoxalase family protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.