IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1628	 58.80	-1	1859506..1859937	+	143	119961648	-	AAur_1701	-	cell division protein MraZ
1629	 60.60	0	1859969..1861105	+	378	119961336	-	AAur_1702	-	putative S-adenosyl-methyltransferase mraW
1630	 63.68	0	1861102..1861770	+	222	119963752	-	AAur_1703	-	hypothetical protein
1631	 60.71	0	1861813..1863609	+	598	119964154	-	AAur_1704	-	penicillin binding protein transpeptidase domain-containing protein
1632	 63.38	0	1863748..1865358	+	536	119960821	murE	AAur_1705	-	UDP-N-acetylmuramyl-tripeptide synthetase
1633	 64.25	0	1865365..1866855	+	496	119961244	murF	AAur_1706	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1634	 59.73	-1	1866852..1867961	+	369	119961696	mraY	AAur_1707	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1635	 62.98	0	1867958..1869532	+	524	119962409	murD	AAur_1708	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1636	 60.91	0	1869535..1870836	+	433	119962829	ftsW	AAur_1709	-	cell division protein FtsW
1637	 64.70	0	1870843..1871961	+	372	119963511	murG	AAur_1710	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
1638	 64.84	0	1871958..1873328	+	456	119963916	murC	AAur_1711	-	UDP-N-acetylmuramate--alanine ligase
1639	 61.02	0	1873321..1874241	+	306	119960916	-	AAur_1712	-	putative cell division protein FtsQ
1640	 64.86	0	1874458..1875678	+	406	119963245	ftsZ	AAur_1713	-	cell division protein FtsZ
1641	 61.00	0	1875704..1876444	+	246	119962354	-	AAur_1714	-	hypothetical protein
1642	 61.92	0	1876437..1877195	+	252	119960860	-	AAur_1715	-	alanine racemase N-terminal domain-containing protein
1643	 58.47	-1	1877282..1877818	+	178	119961408	-	AAur_1716	-	putative protein of unknown function (DUF552)
1644	 54.51	-2	1877926..1878213	+	95	119964123	-	AAur_1717	-	putative integral membrane protein
1645	 61.80	0	1878370..1879068	+	232	119962670	-	AAur_1718	-	cell division protein DivIVA family
1646	 62.89	0	1879200..1879808	+	202	119961133	lspA	AAur_1719	-	lipoprotein signal peptidase
1647	 63.86	0	1879801..1880727	+	308	119961612	-	AAur_1720	-	RNA RluA family pseudouridine synthase
1648	 59.76	0	1880782..1884342	+	1186	119962046	dnaE	AAur_1721	-	DNA polymerase III subunit alpha
1649	 60.68	0	1884358..1884858	-	166	119963951	-	AAur_1722	-	flavin reductase-like domain-containing protein
1650	 63.35	0	1884963..1885505	+	180	119964509	-	AAur_1723	-	hypothetical protein
1651	 63.74	0	1885510..1886874	+	454	119961016	hisD	AAur_1724	-	histidinol dehydrogenase
1652	 60.88	0	1887049..1887549	+	166	119961756	nrdR	AAur_1725	-	NrdR family transcriptional regulator
1653	 63.51	0	1887611..1888306	-	231	119962221	-	AAur_1726	-	short chain dehydrogenase/reductase family oxidoreductase
1654	 62.39	0	1888398..1889216	-	272	119963364	ppgK	AAur_1727	-	polyphosphate glucokinase
1655	 60.18	0	1889274..1890152	-	292	119964451	map	AAur_1728	-	methionine aminopeptidase, type I
1656	 53.94	-2	1890261..1890425	+	54	119962010	-	AAur_1729	-	hypothetical protein
1657	 64.68	0	1890435..1891340	-	301	119962421	panB	AAur_1730	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1658	 63.16	0	1891531..1892871	+	446	119962650	glnA	AAur_1731	-	glutamine synthetase
1659	 63.71	0	1892881..1895892	+	1003	119964183	-	AAur_1733	-	putative glutamate-ammonia-ligase adenylyltransferase
1660	 60.09	0	1895880..1897370	-	496	119962742	-	AAur_1732	-	arylsulfatase
1661	 61.14	0	1897433..1898047	+	204	119961091	-	AAur_1734	-	acetyltransferase, GNAT family protein
1662	 59.92	0	1898044..1898295	+	83	119961443	-	AAur_1735	-	hypothetical protein
1663	 56.41	-2	1898396..1898746	+	116	119964163	-	AAur_1736	-	hypothetical protein
1664	 59.47	-1	1899349..1899834	-	161	119964359	-	AAur_1737	-	hypothetical protein
1665	 56.77	-2	1900076..1900762	+	228	119962234	-	AAur_1738	-	putative lipoprotein
1666	 55.11	-2	1900896..1901414	-	172	119961635	-	AAur_1739	-	acetyltransferase, GNAT family protein
1667	 61.07	0	1901381..1902220	-	279	119963551	-	AAur_1740	-	ISAau1, transposase orfB
1668	 60.22	0	1902250..1902528	-	92	119961826	-	AAur_1741	-	ISAau1, transposase orfA
1669	 55.28	-2	1902801..1904153	-	450	119964522	-	AAur_1742	-	putative lipoprotein
1670	 57.27	-1	1904296..1905210	+	304	119963826	-	AAur_1743	-	phage integrase family protein
1671	 60.77	0	1905320..1906744	-	474	119963401	glnA	AAur_1744	-	glutamine synthetase
1672	 61.19	0	1907058..1907495	+	145	119961668	-	AAur_1745	-	transRDD family protein
1673	 61.15	0	1907584..1908345	-	253	119960581	-	AAur_1746	-	hypothetical protein
1674	 63.89	0	1908441..1909448	-	335	119962838	lipA	AAur_1747	-	lipoyl synthase
1675	 58.47	-1	1909445..1910176	-	243	119961645	lipB	AAur_1748	-	lipoate-protein ligase B
1676	 62.59	0	1910258..1911949	+	563	119960526	-	AAur_1749	-	protein kinase domain-containing protein
1677	 66.21	+1	1912014..1912883	-	289	119962460	-	AAur_1750	-	putative NAD dependent epimerase/dehydratase family protein
1678	 64.15	0	1912975..1916517	+	1180	119963772	-	AAur_1751	-	putative protease
1679	 62.47	0	1916604..1917032	-	142	119961092	-	AAur_1752	-	putative osmotically inducible protein (OsmC)
1680	 61.46	0	1917166..1917549	+	127	119961138	-	AAur_1753	-	putative glyoxalase family protein
1681	 59.32	-1	1917671..1918024	-	117	119960522	-	AAur_1754	-	putative integral membrane protein
1682	 65.10	0	1918171..1919889	-	572	119961649	-	AAur_1755	-	putative 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
1683	 60.76	0	1920002..1921525	-	507	119964061	lpdA	AAur_1756	-	dihydrolipoamide dehydrogenase
1684	 63.98	0	1921683..1923206	-	507	119964309	-	AAur_1757	-	putative cytosol aminopeptidase
1685	 60.31	0	1923468..1924490	+	340	119964455	-	AAur_1758	-	putative protein of unknown function (DUF75)
1686	 64.38	0	1924526..1925881	+	451	119961620	-	AAur_1759	-	major facilitator transporter
1687	 60.77	0	1925991..1927244	+	417	119961085	-	AAur_1760	-	hypothetical protein
1688	 60.96	0	1927491..1928804	+	437	119961685	rpoD	AAur_1761	-	RNA polymerase sigma (70) factor RpoD
1689	 59.86	0	1928985..1929263	-	92	119961293	-	AAur_1762	-	hypothetical protein
1690	 60.98	0	1929462..1931570	+	702	119964148	-	AAur_1764	-	DNA topoisomerase IV subunit B
1691	 68.23	+2	1931567..1932778	-	403	119962533	-	AAur_1763	-	major facilitator transporter
1692	 61.27	0	1932812..1933348	+	178	119963109	-	AAur_1765	-	hypothetical protein
1693	 64.22	0	1933362..1934384	-	340	119963559	-	AAur_1766	-	M48 family peptidase
1694	 63.57	0	1934390..1934776	-	128	119964193	-	AAur_1767	-	BlaI/MecI/CopY family transcriptional regulator
1695	 60.60	0	1935057..1936655	+	532	119961147	-	AAur_1768	-	putative cytochrome d ubiquinol oxidase subunit I (CydA)
1696	 63.99	0	1936674..1937756	+	360	119961345	cydB	AAur_1769	-	cytochrome d ubiquinol oxidase, subunit II
1697	 64.29	0	1941178..1942188	+	336	119964439	-	AAur_1771	-	acetyltransferase, GNAT family protein
1698	 62.04	0	1942193..1942711	-	172	119960665	-	AAur_1772	-	hypothetical protein
1699	 57.03	-2	1942841..1943224	+	127	119961226	-	AAur_1773	-	hypothetical protein
1700	 63.37	0	1943325..1945841	-	838	119963748	-	AAur_1774	-	DNA topoisomerase IV subunit A
1701	 64.20	0	1945951..1948584	+	877	119964042	-	AAur_1775	-	GNAT family acetyltransferase
1702	 64.60	0	1948642..1949367	+	241	119960775	-	AAur_1776	-	hypothetical protein
1703	 65.04	0	1949364..1950593	+	409	119962512	-	AAur_1777	-	Type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein
1704	 62.28	0	1950586..1951314	+	242	119961534	tdk	AAur_1778	-	thymidine kinase
1705	 64.14	0	1951351..1952973	-	540	119963241	-	AAur_1779	-	hypothetical protein
1706	 60.67	0	1953006..1953305	+	99	119961772	-	AAur_1780	-	hypothetical protein
1707	 63.69	0	1953376..1953846	-	156	119961421	-	AAur_1781	-	hypothetical protein
1708	 61.42	0	1953872..1954462	+	196	119960870	-	AAur_1782	-	putative deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
1709	 66.14	+1	1954582..1955340	+	252	119964467	-	AAur_1783	-	hypothetical protein
1710	 64.75	0	1955707..1956489	+	260	119962765	-	AAur_1785	-	putative integral membrane protein
1711	 62.06	0	1956456..1957193	-	245	119963196	trkA	AAur_1784	-	Trk-type K+ transport system, NAD-binding component
1712	 64.00	0	1957193..1957867	-	224	119960959	trkA	AAur_1786	-	Trk-type K+ transport system, NAD-binding component
1713	 60.68	0	1958016..1959953	+	645	119964314	-	AAur_1787	-	putative integral membrane protein
1714	 64.84	0	1959954..1961318	+	454	119961512	-	AAur_1788	-	putative tRNA (Uracil-5-)-methyltransferase
1715	 61.93	0	1961562..1964369	+	935	119963056	acnA	AAur_1789	-	aconitate hydratase 1
1716	 62.77	0	1964558..1966531	+	657	119964177	dxs	AAur_1790	-	1-deoxy-D-xylulose-5-phosphate synthase
1717	 59.65	-1	1966528..1967097	+	189	119963126	-	AAur_1791	-	hypothetical protein
1718	 58.82	-1	1967094..1967654	+	186	119962395	-	AAur_1792	-	hypothetical protein
1719	 61.64	0	1967685..1967903	+	72	119960853	-	AAur_1793	-	hypothetical protein
1720	 62.91	0	1967961..1968944	+	327	119961902	-	AAur_1794	-	aldo/keto reductase family oxidoreductase
1721	 63.17	0	1969027..1971171	-	714	119962525	-	AAur_1795	-	fatty acid oxidation complex alpha-subunit
1722	 65.72	+1	1971168..1972439	-	423	119963645	-	AAur_1796	-	putative acetyl-coa acetyltransferase (thiolase)
1723	 66.23	+1	1972634..1973995	-	453	119962304	-	AAur_1797	-	putative ribonuclease D
1724	 61.97	0	1974076..1974735	-	219	119960612	-	AAur_1798	-	hypothetical protein
1725	 62.51	0	1974803..1975909	-	368	119961501	-	AAur_1799	-	low-specificity L-threonine aldolase
1726	 64.47	0	1975920..1976603	-	227	119962229	-	AAur_1800	-	short chain dehydrogenase/reductase family oxidoreductase
1727	 62.02	0	1976657..1978075	-	472	119964024	-	AAur_1801	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.