IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1520	 60.40	0	1731624..1733315	+	563	119961428	-	AAur_1587	-	metallo-beta-lactamase family protein
1521	 62.51	0	1733328..1736261	+	977	119962736	-	AAur_1588	-	putative FtsK/SpoIIIE family protein
1522	 62.85	0	1736300..1736902	+	200	119961894	pgsA	AAur_1589	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1523	 61.94	0	1737052..1737411	+	119	119963637	-	AAur_1590	-	putative competence/damage-inducible protein CinA
1524	 61.11	0	1737642..1737983	+	113	119960859	-	AAur_1591	-	helix-turn-helix domain-containing protein
1525	 62.61	0	1738077..1738667	-	196	119962582	-	AAur_1592	-	MarR family transcriptional regulator
1526	 61.78	0	1738658..1738882	+	74	119962131	-	AAur_1593	-	hypothetical protein
1527	 60.73	0	1739141..1740184	+	347	119961491	recA	AAur_1594	-	recA protein
1528	 60.41	0	1740174..1740716	+	180	119963662	-	AAur_1595	-	putative regulatory protein RecX
1529	 60.53	0	1740716..1742263	+	515	119960909	miaB	AAur_1596	-	tRNA-i(6)A37 thiotransferase
1530	 61.49	0	1742283..1743209	+	308	119962539	miaA	AAur_1597	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1531	 64.09	0	1743256..1744224	+	322	119964081	dapF	AAur_1599	-	diaminopimelate epimerase
1532	 63.09	0	1744205..1744819	-	204	119961880	-	AAur_1598	-	methyltransferase small subunit
1533	 61.32	0	1745033..1746922	+	629	119961109	-	AAur_1600	-	putative GTP-binding protein
1534	 64.19	0	1746915..1748975	+	686	119963971	-	AAur_1601	-	ATP-dependent helicase,-like protein
1535	 62.23	0	1749056..1749799	-	247	119962894	lexA	AAur_1602	-	LexA repressor
1536	 66.11	+1	1750149..1750508	+	119	119963353	-	AAur_1603	-	LysM domain-containing protein
1537	 62.20	0	1750587..1751705	+	372	119960831	hisC	AAur_1604	-	histidinol-phosphate aminotransferase
1538	 62.36	0	1751752..1752378	+	208	119960952	hisB	AAur_1605	-	imidazoleglycerol-phosphate dehydratase
1539	 63.31	0	1752375..1753118	+	247	119963657	hisH	AAur_1606	-	imidazole glycerol phosphate synthase subunit HisH
1540	 57.86	-1	1753119..1753277	+	52	119961946	-	AAur_1607	-	hypothetical protein
1541	 62.50	0	1753327..1754070	+	247	119963543	-	AAur_1608	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1542	 63.93	0	1754070..1754981	+	303	119963368	-	AAur_1609	-	hypothetical protein
1543	 63.98	0	1755033..1756337	+	434	119963201	-	AAur_1610	-	major facilitator transporter
1544	 61.24	0	1756423..1757049	-	208	119962880	-	AAur_1611	-	hypothetical protein
1545	 63.67	0	1757216..1758250	+	344	119961908	infC	AAur_1612	-	translation initiation factor IF-3
1546	 59.49	-1	1758368..1758562	+	64	119962218	rpmI	AAur_1613	-	ribosomal protein L35
1547	 62.93	0	1758682..1759350	+	222	119964246	rplT	AAur_1614	-	ribosomal protein L20
1548	 64.47	0	1759377..1760288	+	303	119960734	-	AAur_1615	-	putative 23S rRNA methyltransferase
1549	 61.27	0	1760389..1761315	+	308	119961422	-	AAur_1616	-	putative cation efflux family protein
1550	 61.97	0	1761415..1762734	-	439	119963689	-	AAur_1617	-	major facilitator transporter
1551	 63.77	0	1762778..1763191	+	137	119964216	-	AAur_1618	-	MutT/nudix family protein
1552	 62.25	0	1763202..1764332	-	376	119962544	-	AAur_1619	-	radical SAM domain-containing protein
1553	 61.06	0	1764388..1765029	+	213	119963081	pcp	AAur_1621	-	pyrrolidone-carboxylate peptidase
1554	 63.97	0	1765026..1765655	-	209	119961292	-	AAur_1620	-	putative protein of unknown function (DUF541)
1555	 66.00	+1	1765658..1766104	-	148	119964357	-	AAur_1622	-	hypothetical protein
1556	 63.18	0	1766263..1767324	+	353	119960852	pheS	AAur_1623	-	phenylalanyl-tRNA synthetase subunit alpha
1557	 64.23	0	1767327..1769870	+	847	119962268	pheT	AAur_1624	-	phenylalanyl-tRNA synthetase, beta subunit
1558	 61.94	0	1770097..1770921	+	274	119961745	-	AAur_1625	-	trypsin-like serine protease
1559	 64.97	0	1771052..1771699	+	215	119962628	-	AAur_1626	-	putative phosphopantetheinyl transferase
1560	 63.39	0	1771704..1773047	-	447	119963016	-	AAur_1627	-	putative metallopeptidase
1561	 65.10	0	1773060..1777016	-	1318	119962414	-	AAur_1628	-	putative non-ribosomal peptide synthetase
1562	 64.39	0	1777128..1778093	-	321	119962440	-	AAur_1629	-	quinone oxidoreductase
1563	 61.43	0	1778179..1779267	-	362	119964162	-	AAur_1630	-	putative delta 6 fatty acid desaturase
1564	 64.53	0	1779435..1780466	+	343	119964400	argC	AAur_1631	-	N-acetyl-gamma-glutamyl-phosphate reductase
1565	 64.61	0	1780463..1781629	+	388	119960641	argJ	AAur_1632	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1566	 63.20	0	1781634..1782584	+	316	119961526	argB	AAur_1633	-	acetylglutamate kinase
1567	 65.96	+1	1782581..1783858	+	425	119961662	argD	AAur_1634	-	acetylornithine aminotransferase
1568	 63.19	0	1783855..1784862	+	335	119961815	argF	AAur_1635	-	ornithine carbamoyltransferase
1569	 66.85	+1	1784862..1785398	+	178	119962828	argR	AAur_1636	-	arginine repressor
1570	 64.34	0	1785470..1786675	+	401	119964149	argG	AAur_1637	-	argininosuccinate synthase
1571	 66.26	+1	1786672..1788147	+	491	119962867	argH	AAur_1638	-	argininosuccinate lyase
1572	 66.40	+1	1788230..1788967	+	245	119964012	-	AAur_1639	-	hypothetical protein
1573	 66.15	+1	1788983..1790542	-	519	119961410	-	AAur_1640	-	putative DNA methylation and regulatory protein (ADA)
1574	 67.62	+1	1790665..1791291	+	208	119962753	-	AAur_1641	-	putative 3-methyladenine DNA glycosylase
1575	 64.69	0	1791423..1793651	+	742	119964066	-	AAur_1642	-	DNA or RNA helicase superfamily protein I
1576	 62.70	0	1793689..1794999	+	436	119960707	tyrS	AAur_1643	-	tyrosyl-tRNA synthetase
1577	 65.33	+1	1795038..1795262	-	74	119963198	-	AAur_1644	-	hypothetical protein
1578	 61.24	0	1795323..1795451	-	42	119963883	-	AAur_1645	-	hypothetical protein
1579	 65.57	+1	1801796..1803892	+	698	119962017	-	AAur_1649	-	hypothetical protein
1580	 64.54	0	1803885..1804871	+	328	119962415	-	AAur_1650	-	putative haloacid dehalogenase-like hydrolase
1581	 63.98	0	1804881..1805141	+	86	119962690	-	AAur_1651	-	hypothetical protein
1582	 63.10	0	1805145..1805957	+	270	119961881	-	AAur_1652	-	hemolysin A
1583	 62.06	0	1805971..1807011	+	346	119963285	ppnK	AAur_1653	-	inorganic polyphosphate/ATP-NAD kinase
1584	 65.23	+1	1807015..1808754	+	579	119963599	recN	AAur_1654	-	DNA repair protein RecN
1585	 61.11	0	1808882..1810627	+	581	119960911	pyrG	AAur_1655	-	CTP synthetase
1586	 63.90	0	1810703..1811317	+	204	119961700	-	AAur_1656	-	putative mutT/nudix family protein
1587	 64.38	0	1811320..1812279	+	319	119964153	xerD	AAur_1657	-	tyrosine recombinase XerD
1588	 62.85	0	1812303..1813061	-	252	119963036	-	AAur_1658	-	hypothetical protein
1589	 61.45	0	1813118..1813615	+	165	119962617	-	AAur_1659	-	putative mutT/nudix family protein
1590	 63.25	0	1813689..1814828	-	379	119962463	gltA	AAur_1660	-	methylcitrate synthase
1591	 62.80	0	1814906..1815811	-	301	119961999	prpB	AAur_1661	-	methylisocitrate lyase
1592	 64.89	0	1815812..1817332	-	506	119960730	-	AAur_1662	-	putative 2-methylcitrate dehydratase
1593	 68.22	+2	1817343..1817984	-	213	119961388	-	AAur_1663	-	GntR family transcriptional regulator
1594	 60.61	0	1818053..1819141	-	362	119963127	-	AAur_1664	-	hypothetical protein
1595	 64.92	0	1819284..1820939	-	551	119962528	-	AAur_1665	-	LuxR family transcriptional regulator
1596	 66.67	+1	1820997..1821710	-	237	119963731	-	AAur_1666	-	putative two-component response regulator
1597	 63.45	0	1821707..1823353	-	548	119960794	-	AAur_1667	-	putative signal transduction histidine kinase
1598	 60.50	0	1823493..1824839	+	448	119964420	-	AAur_1668	-	putative sodium:dicarboxylate symporter family protein
1599	 62.22	0	1825094..1825993	+	299	119961272	-	AAur_1669	-	putative ParA-family protein
1600	 62.45	0	1826000..1826923	+	307	119964137	scpA	AAur_1670	-	segregation and condensation protein A
1601	 61.49	0	1826916..1827572	+	218	119962118	-	AAur_1671	-	putative segregation and condensation protein B
1602	 65.02	0	1827724..1828938	+	404	119962911	-	AAur_1672	-	putative RNA pseudouridine synthase
1603	 62.42	0	1828942..1830048	+	368	119963797	-	AAur_1673	-	prephenate dehydrogenase
1604	 60.64	0	1830048..1830761	+	237	119962716	cmk	AAur_1674	-	cytidylate kinase
1605	 63.80	0	1830754..1831485	+	243	119963651	-	AAur_1675	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferases
1606	 65.18	+1	1831571..1833046	+	491	119964121	engA	AAur_1676	-	GTP-binding protein EngA
1607	 64.65	0	1833391..1833837	-	148	119960524	-	AAur_1678	-	MarR family transcriptional regulator
1608	 56.07	-2	1835744..1836130	+	128	119962802	gcvH	AAur_1680	-	glycine cleavage system H protein
1609	 61.43	0	1836268..1836744	+	158	119963588	-	AAur_1681	-	FHA domain-containing protein
1610	 63.46	0	1836765..1837481	+	238	119962491	-	AAur_1682	-	MerR family transcriptional regulator
1611	 60.32	0	1837481..1837984	+	167	119962554	-	AAur_1683	-	hypothetical protein
1612	 64.48	0	1838220..1838813	+	197	119961350	-	AAur_1684	-	hypothetical protein
1613	 63.75	0	1838936..1839757	-	273	119963103	-	AAur_1685	-	putative ParA-family protein
1614	 64.05	0	1840049..1843444	+	1131	119962530	pyc	AAur_1686	-	pyruvate carboxylase
1615	 62.09	0	1843513..1845324	-	603	119961925	-	AAur_1687	-	putative long-chain-fatty-acid-CoA ligase
1616	 68.37	+2	1845512..1846570	+	352	119962149	glk	AAur_1688	-	glucokinase
1617	 65.05	0	1846600..1847154	-	184	119961537	-	AAur_1689	-	hypothetical protein
1618	 62.36	0	1847941..1848729	-	262	119962807	-	AAur_1691	-	putative esterase/lipase
1619	 59.60	-1	1848840..1849631	+	263	119961643	-	AAur_1692	-	putative 1-acylglycerol-3-phosphate O-acyltransferase
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.