IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1445	 63.87	0	1655419..1656885	-	488	119961360	-	AAur_1510	-	putative sodium:solute symporter family protein
1446	 64.46	0	1656882..1657244	-	120	119960927	-	AAur_1511	-	putative integral membrane protein
1447	 64.56	0	1657241..1657951	-	236	119963845	-	AAur_1512	-	two-component system regulatory protein
1448	 64.09	0	1657982..1659184	-	400	119964352	-	AAur_1513	-	putative signal transduction histidine kinase
1449	 56.17	-2	1659393..1659773	+	126	119964226	-	AAur_1514	-	hypothetical protein
1450	 61.91	0	1659770..1661389	+	539	119960626	-	AAur_1515	-	putative sodium:solute symporter family protein
1451	 60.78	0	1661508..1662527	-	339	119962368	-	AAur_1516	-	hypothetical protein
1452	 66.49	+1	1662601..1663182	-	193	119960556	-	AAur_1517	-	hypothetical protein
1453	 60.54	0	1663224..1663631	-	135	119962267	-	AAur_1518	-	hypothetical protein
1454	 61.52	0	1663773..1664471	-	232	119961043	-	AAur_1519	-	hypothetical protein
1455	 62.21	0	1664620..1665090	-	156	119962043	-	AAur_1520	-	AsnC family transcriptional regulator
1456	 61.02	0	1665358..1666455	+	365	119960563	-	AAur_1521	-	pyruvate dehydrogenase E1 component, alpha subunit
1457	 61.42	0	1666455..1667465	+	336	119960874	-	AAur_1522	-	putative pyruvate dehydrogenase E1 component, beta subunit
1458	 63.69	0	1667462..1668874	+	470	119963490	-	AAur_1523	-	pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase)
1459	 62.43	0	1668952..1669824	-	290	119963191	-	AAur_1524	-	putative UDP-galactose 4-epimerase
1460	 66.54	+1	1670077..1671693	-	538	119960972	-	AAur_1525	-	HNH endonuclease domain-containing protein
1461	 61.90	0	1671842..1672156	-	104	119961883	-	AAur_1526	-	hypothetical protein
1462	 61.89	0	1673011..1674621	+	536	119963214	-	AAur_1528	-	putative acetyl/propionyl CoA carboxylase, beta subunit
1463	 65.70	+1	1674747..1676819	+	690	119963622	accA	AAur_1529	-	Acetyl-CoA carboxylase alpha chain
1464	 61.08	0	1676816..1677979	+	387	119961544	-	AAur_1530	-	putative Acyl-CoA dehydrogenase
1465	 61.78	0	1678017..1678835	+	272	119962865	-	AAur_1531	-	3-oxoacid CoA-transferase, A subunit
1466	 61.49	0	1678832..1679584	+	250	119963312	-	AAur_1532	-	3-oxoacid CoA-transferase, B subunit
1467	 60.49	0	1679581..1680066	+	161	119963315	-	AAur_1533	-	MaoC-like domain-containing protein
1468	 63.91	0	1680107..1680976	+	289	119961034	-	AAur_1534	-	putative citrate lyase beta-subunit
1469	 64.72	0	1681064..1682194	-	376	119962200	-	AAur_1535	-	oxidoreductase family protein
1470	 60.91	0	1682179..1682907	-	242	119960587	-	AAur_1536	-	hypothetical protein
1471	 64.46	0	1682913..1684133	-	406	119961403	-	AAur_1537	-	oxidoreductase family protein
1472	 59.67	-1	1684147..1685046	-	299	119961634	-	AAur_1538	-	putative ABC-type sugar transport system, permease component
1473	 63.15	0	1685046..1685984	-	312	119961732	-	AAur_1539	-	putative sugar ABC transporter, permease protein
1474	 59.77	0	1685989..1687308	-	439	119962665	-	AAur_1540	-	putative extracellular sugar-binding protein
1475	 63.86	0	1687593..1688660	+	355	119963242	-	AAur_1542	-	LacI family transcriptional regulator
1476	 62.97	0	1688632..1690092	-	486	119961097	-	AAur_1541	-	putative integral membrane protein
1477	 63.88	0	1690196..1691380	+	394	119962940	dxr	AAur_1543	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1478	 62.01	0	1691413..1692744	+	443	119961823	-	AAur_1544	-	zinc metalloprotease
1479	 62.24	0	1692809..1693102	+	97	119963419	-	AAur_1545	-	YCII-related domain-containing protein
1480	 62.21	0	1693151..1694317	+	388	119962180	ispG	AAur_1546	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1481	 64.26	0	1694328..1695158	+	276	119961012	-	AAur_1547	-	putative acetyltransferase, GNAT family protein
1482	 61.73	0	1695234..1695962	+	242	119960507	-	AAur_1548	-	putative lipoprotein
1483	 64.38	0	1695975..1696631	-	218	119962543	-	AAur_1549	-	transcriptional regulator
1484	 60.35	0	1696628..1697371	-	247	119964004	-	AAur_1550	-	DrrB family ABC transporter
1485	 64.59	0	1697380..1698150	-	256	119961462	-	AAur_1551	-	putative ABC transporter, ATP-binding protein
1486	 57.02	-2	1698327..1698440	+	37	119964058	-	AAur_1552	-	hypothetical protein
1487	 63.96	0	1698658..1700469	+	603	119963667	proS	AAur_1553	-	prolyl-tRNA synthetase
1488	 61.90	0	1700466..1701263	+	265	119963633	-	AAur_1554	-	putative integral membrane protein
1489	 66.77	+1	1701455..1702465	-	336	119962343	sph	AAur_1555	-	streptomycin 6-kinase
1490	 64.47	0	1702515..1703243	-	242	119961762	-	AAur_1556	-	putative integral membrane protein
1491	 65.98	+1	1703295..1704461	-	388	119963865	-	AAur_1557	-	hypothetical protein
1492	 60.29	0	1704492..1705103	+	203	119963357	-	AAur_1558	-	putative uncharacterized Bcr YhbC family protein
1493	 62.39	0	1705103..1706083	+	326	119962022	nusA	AAur_1559	-	transcription termination factor NusA
1494	 64.44	0	1706172..1706621	+	149	119960833	-	AAur_1560	-	putative protein of unknown function (DUF448)
1495	 65.73	+1	1706774..1709650	+	958	119964199	infB	AAur_1561	-	translation initiation factor IF-2
1496	 62.30	0	1709728..1710231	+	167	119963960	rbfA	AAur_1562	-	ribosome-binding factor A
1497	 64.60	0	1710320..1710802	+	160	119962643	guaD	AAur_1563	-	guanine deaminase
1498	 63.23	0	1710816..1711979	-	387	119963013	aspC	AAur_1564	-	aspartate aminotransferase
1499	 63.35	0	1712005..1712940	+	311	119964316	truB	AAur_1565	-	tRNA pseudouridine synthase B
1500	 57.63	-1	1712943..1713296	+	117	119964258	-	AAur_1566	-	putative integral membrane protein
1501	 61.59	0	1713299..1713751	+	150	119963754	-	AAur_1567	-	putative integral membrane protein
1502	 62.91	0	1713841..1714824	+	327	119962882	ribF	AAur_1568	-	riboflavin biosynthesis protein RibF
1503	 59.26	-1	1714984..1715253	+	89	119961383	rpsO	AAur_1569	-	ribosomal protein S15
1504	 63.07	0	1715494..1717746	+	750	119960529	-	AAur_1570	-	polynucleotide phosphorylase/polyadenylase
1505	 62.73	0	1717825..1719171	+	448	119964387	-	AAur_1571	-	Zn-dependent peptidase
1506	 64.72	0	1719260..1719721	+	153	119964079	-	AAur_1572	-	hypothetical protein
1507	 67.79	+1	1719753..1720019	-	88	119961032	-	AAur_1573	-	putative molybdopterin cofactor synthesis protein moaD
1508	 64.91	0	1720024..1721163	-	379	119962194	moaA	AAur_1574	-	molybdenum cofactor biosynthesis protein A
1509	 60.61	0	1721257..1722081	+	274	119961724	-	AAur_1575	-	two-component system response regulator
1510	 63.88	0	1722068..1723321	+	417	119964150	-	AAur_1576	-	putative signal transduction histidine kinase
1511	 64.90	0	1723318..1724898	+	526	119962713	-	AAur_1577	-	molybdopterin oxidoreductase domain-containing protein
1512	 65.61	+1	1724958..1726184	+	408	119961099	moeA	AAur_1578	-	molybdopterin cofactor synthesis protein moeA
1513	 62.52	0	1726172..1726702	+	176	119961386	moaC	AAur_1579	-	molybdenum cofactor biosynthesis protein C
1514	 61.40	0	1727186..1727641	+	151	119962874	moaE	AAur_1581	-	molybdopterin converting factor, subunit 2
1515	 64.30	0	1727693..1728451	+	252	119963168	dapB	AAur_1582	-	dihydrodipicolinate reductase
1516	 61.76	0	1728456..1728944	+	162	119960627	-	AAur_1584	-	TPR repeat-containing protein
1517	 64.97	0	1728920..1730155	-	411	119964475	-	AAur_1583	-	putative integral membrane protein
1518	 65.18	+1	1730245..1730580	+	111	119961901	-	AAur_1585	-	hypothetical protein
1519	 62.49	0	1730685..1731617	+	310	119962380	dapA	AAur_1586	-	dihydrodipicolinate synthase
1520	 60.40	0	1731624..1733315	+	563	119961428	-	AAur_1587	-	metallo-beta-lactamase family protein
1521	 62.51	0	1733328..1736261	+	977	119962736	-	AAur_1588	-	putative FtsK/SpoIIIE family protein
1522	 62.85	0	1736300..1736902	+	200	119961894	pgsA	AAur_1589	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1523	 61.94	0	1737052..1737411	+	119	119963637	-	AAur_1590	-	putative competence/damage-inducible protein CinA
1524	 61.11	0	1737642..1737983	+	113	119960859	-	AAur_1591	-	helix-turn-helix domain-containing protein
1525	 62.61	0	1738077..1738667	-	196	119962582	-	AAur_1592	-	MarR family transcriptional regulator
1526	 61.78	0	1738658..1738882	+	74	119962131	-	AAur_1593	-	hypothetical protein
1527	 60.73	0	1739141..1740184	+	347	119961491	recA	AAur_1594	-	recA protein
1528	 60.41	0	1740174..1740716	+	180	119963662	-	AAur_1595	-	putative regulatory protein RecX
1529	 60.53	0	1740716..1742263	+	515	119960909	miaB	AAur_1596	-	tRNA-i(6)A37 thiotransferase
1530	 61.49	0	1742283..1743209	+	308	119962539	miaA	AAur_1597	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1531	 64.09	0	1743256..1744224	+	322	119964081	dapF	AAur_1599	-	diaminopimelate epimerase
1532	 63.09	0	1744205..1744819	-	204	119961880	-	AAur_1598	-	methyltransferase small subunit
1533	 61.32	0	1745033..1746922	+	629	119961109	-	AAur_1600	-	putative GTP-binding protein
1534	 64.19	0	1746915..1748975	+	686	119963971	-	AAur_1601	-	ATP-dependent helicase,-like protein
1535	 62.23	0	1749056..1749799	-	247	119962894	lexA	AAur_1602	-	LexA repressor
1536	 66.11	+1	1750149..1750508	+	119	119963353	-	AAur_1603	-	LysM domain-containing protein
1537	 62.20	0	1750587..1751705	+	372	119960831	hisC	AAur_1604	-	histidinol-phosphate aminotransferase
1538	 62.36	0	1751752..1752378	+	208	119960952	hisB	AAur_1605	-	imidazoleglycerol-phosphate dehydratase
1539	 63.31	0	1752375..1753118	+	247	119963657	hisH	AAur_1606	-	imidazole glycerol phosphate synthase subunit HisH
1540	 57.86	-1	1753119..1753277	+	52	119961946	-	AAur_1607	-	hypothetical protein
1541	 62.50	0	1753327..1754070	+	247	119963543	-	AAur_1608	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1542	 63.93	0	1754070..1754981	+	303	119963368	-	AAur_1609	-	hypothetical protein
1543	 63.98	0	1755033..1756337	+	434	119963201	-	AAur_1610	-	major facilitator transporter
1544	 61.24	0	1756423..1757049	-	208	119962880	-	AAur_1611	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.