IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1395	 59.42	-1	1592639..1593562	+	307	119962897	-	AAur_1454	-	putative transmembrane lipoprotein LplC
1396	 62.33	0	1593629..1595287	+	552	119961033	-	AAur_1455	-	putative lipoprotein precursor lplA
1397	 64.77	0	1595344..1596396	+	350	119962199	-	AAur_1456	-	LacI family transcriptional regulator
1398	 62.78	0	1596423..1597607	+	394	119962849	-	AAur_1457	-	oxidoreductase family protein
1399	 65.69	+1	1597619..1598542	-	307	119962944	-	AAur_1458	-	LysR family transcriptional regulator
1400	 62.37	0	1598644..1599690	+	348	119963295	tdh	AAur_1459	-	L-threonine 3-dehydrogenase
1401	 63.65	0	1599753..1600946	+	397	119961542	kbl	AAur_1460	-	2-amino-3-ketobutyrate coenzyme A ligase
1402	 60.22	0	1601631..1601909	+	92	119960503	-	AAur_1461	-	ISAau1, transposase orfA
1403	 61.07	0	1601939..1602778	+	279	119964219	-	AAur_1462	-	ISAau1, transposase orfB
1404	 64.20	0	1602832..1603845	+	337	119961913	-	AAur_1463	-	FAD dependent oxidoreductase domain-containing protein
1405	 67.56	+1	1603857..1605086	+	409	119961066	hutI	AAur_1464	-	imidazolonepropionase
1406	 63.28	0	1605153..1609550	-	1465	119964370	-	AAur_1465	-	hypothetical protein
1407	 62.85	0	1609826..1610743	+	305	119963785	-	AAur_1466	-	SIS domain-containing protein
1408	 64.88	0	1610795..1611688	+	297	119964083	glk	AAur_1467	-	glucokinase
1409	 66.77	+1	1611685..1612653	+	322	119960510	-	AAur_1468	-	sugar kinase
1410	 63.10	0	1612650..1613489	+	279	119961051	-	AAur_1469	-	putative fructose/tagatose bisphosphate aldolase
1411	 63.01	0	1613513..1614304	+	263	119961758	-	AAur_1470	-	DeoR family transcriptional regulator
1412	 60.31	0	1614329..1615099	-	256	119963398	-	AAur_1471	-	hypothetical protein
1413	 60.98	0	1615098..1615871	+	257	119963965	-	AAur_1472	-	putative CAAX amino terminal protease family protein
1414	 61.07	0	1615993..1616760	-	255	119964436	-	AAur_1473	-	hypothetical protein
1415	 64.09	0	1616858..1618174	+	438	119962831	-	AAur_1474	-	O-acetylhomoserine sulfhydrylase
1416	 62.92	0	1618469..1619590	+	373	119963380	metX	AAur_1475	-	homoserine O-acetyltransferase
1417	 64.87	0	1619614..1620003	-	129	119964196	-	AAur_1476	-	hypothetical protein
1418	 63.51	0	1620084..1621256	-	390	119964411	-	AAur_1477	-	hypothetical protein
1419	 66.54	+1	1621286..1622056	-	256	119963968	-	AAur_1478	-	GDSL-like lipase/acylhydrolase domain-containing protein
1420	 60.32	0	1622109..1622849	+	246	119961479	-	AAur_1480	-	phospholipase/carboxylesterase family protein
1421	 59.21	-1	1622846..1623073	-	75	119960883	-	AAur_1479	-	S4 domain-containing protein
1422	 64.58	0	1623097..1624104	+	335	119961726	-	AAur_1481	-	hypothetical protein
1423	 61.83	0	1624253..1625638	+	461	119963161	glyS	AAur_1482	-	glycyl-tRNA synthetase
1424	 65.01	0	1625641..1626603	+	320	119962790	-	AAur_1483	-	hypothetical protein
1425	 64.05	0	1628233..1629720	+	495	119961626	-	AAur_1485	-	YibE/F-like family protein
1426	 65.01	0	1629810..1631015	+	401	119963532	-	AAur_1486	-	IMP dehydrogenase/GMP reductase domain-containing protein
1427	 62.87	0	1631080..1632396	+	438	119963858	-	AAur_1487	-	putative deoxyguanosinetriphosphate triphosphohydrolase
1428	 64.54	0	1632455..1634338	+	627	119962293	dnaG	AAur_1488	-	DNA primase
1429	 67.89	+2	1634703..1635110	-	135	119962233	-	AAur_1491	-	hypothetical protein
1430	 61.99	0	1635155..1636438	-	427	119963493	-	AAur_1492	-	esterase family protein
1431	 62.91	0	1636461..1638959	-	832	119964070	-	AAur_1493	-	putative integral membrane protein (DUF470, DUF471, DUF472)
1432	 67.20	+1	1639083..1639268	-	61	119960961	-	AAur_1494	-	hypothetical protein
1433	 61.95	0	1639286..1640515	-	409	119961166	-	AAur_1495	-	Bcr/CflA family drug resistance transporter
1434	 58.89	-1	1640690..1641538	+	282	119961642	-	AAur_1496	-	putative protein of unknown function (DUF1469)
1435	 59.62	-1	1641586..1642209	+	207	119962593	-	AAur_1497	-	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1436	 61.81	0	1642209..1643114	+	301	119963116	-	AAur_1498	-	putative integral membrane protein
1437	 61.15	0	1643222..1644418	+	398	119962484	-	AAur_1499	-	putative glycosyl transferase, group 1 family protein
1438	 62.70	0	1647595..1649358	-	587	119964040	-	AAur_1502	-	M23 peptidase domain-containing protein
1439	 62.01	0	1650758..1651594	+	278	119963267	tsf	AAur_1504	-	translation elongation factor Ts
1440	 61.97	0	1651623..1652453	+	276	119964115	pyrH	AAur_1505	-	uridylate kinase
1441	 61.65	0	1652555..1653112	+	185	119963211	frr	AAur_1506	-	ribosome recycling factor
1442	 64.10	0	1653112..1654047	+	311	119964036	-	AAur_1507	-	putative phosphatidate cytidylyltransferase
1443	 63.08	0	1654069..1654653	+	194	119963626	-	AAur_1508	-	hypothetical protein
1444	 59.71	-1	1654672..1655217	-	181	119963919	-	AAur_1509	-	hypothetical protein
1445	 63.87	0	1655419..1656885	-	488	119961360	-	AAur_1510	-	putative sodium:solute symporter family protein
1446	 64.46	0	1656882..1657244	-	120	119960927	-	AAur_1511	-	putative integral membrane protein
1447	 64.56	0	1657241..1657951	-	236	119963845	-	AAur_1512	-	two-component system regulatory protein
1448	 64.09	0	1657982..1659184	-	400	119964352	-	AAur_1513	-	putative signal transduction histidine kinase
1449	 56.17	-2	1659393..1659773	+	126	119964226	-	AAur_1514	-	hypothetical protein
1450	 61.91	0	1659770..1661389	+	539	119960626	-	AAur_1515	-	putative sodium:solute symporter family protein
1451	 60.78	0	1661508..1662527	-	339	119962368	-	AAur_1516	-	hypothetical protein
1452	 66.49	+1	1662601..1663182	-	193	119960556	-	AAur_1517	-	hypothetical protein
1453	 60.54	0	1663224..1663631	-	135	119962267	-	AAur_1518	-	hypothetical protein
1454	 61.52	0	1663773..1664471	-	232	119961043	-	AAur_1519	-	hypothetical protein
1455	 62.21	0	1664620..1665090	-	156	119962043	-	AAur_1520	-	AsnC family transcriptional regulator
1456	 61.02	0	1665358..1666455	+	365	119960563	-	AAur_1521	-	pyruvate dehydrogenase E1 component, alpha subunit
1457	 61.42	0	1666455..1667465	+	336	119960874	-	AAur_1522	-	putative pyruvate dehydrogenase E1 component, beta subunit
1458	 63.69	0	1667462..1668874	+	470	119963490	-	AAur_1523	-	pyruvate dehydrogenase E2 (dihydrolipoamide acetyltransferase)
1459	 62.43	0	1668952..1669824	-	290	119963191	-	AAur_1524	-	putative UDP-galactose 4-epimerase
1460	 66.54	+1	1670077..1671693	-	538	119960972	-	AAur_1525	-	HNH endonuclease domain-containing protein
1461	 61.90	0	1671842..1672156	-	104	119961883	-	AAur_1526	-	hypothetical protein
1462	 61.89	0	1673011..1674621	+	536	119963214	-	AAur_1528	-	putative acetyl/propionyl CoA carboxylase, beta subunit
1463	 65.70	+1	1674747..1676819	+	690	119963622	accA	AAur_1529	-	Acetyl-CoA carboxylase alpha chain
1464	 61.08	0	1676816..1677979	+	387	119961544	-	AAur_1530	-	putative Acyl-CoA dehydrogenase
1465	 61.78	0	1678017..1678835	+	272	119962865	-	AAur_1531	-	3-oxoacid CoA-transferase, A subunit
1466	 61.49	0	1678832..1679584	+	250	119963312	-	AAur_1532	-	3-oxoacid CoA-transferase, B subunit
1467	 60.49	0	1679581..1680066	+	161	119963315	-	AAur_1533	-	MaoC-like domain-containing protein
1468	 63.91	0	1680107..1680976	+	289	119961034	-	AAur_1534	-	putative citrate lyase beta-subunit
1469	 64.72	0	1681064..1682194	-	376	119962200	-	AAur_1535	-	oxidoreductase family protein
1470	 60.91	0	1682179..1682907	-	242	119960587	-	AAur_1536	-	hypothetical protein
1471	 64.46	0	1682913..1684133	-	406	119961403	-	AAur_1537	-	oxidoreductase family protein
1472	 59.67	-1	1684147..1685046	-	299	119961634	-	AAur_1538	-	putative ABC-type sugar transport system, permease component
1473	 63.15	0	1685046..1685984	-	312	119961732	-	AAur_1539	-	putative sugar ABC transporter, permease protein
1474	 59.77	0	1685989..1687308	-	439	119962665	-	AAur_1540	-	putative extracellular sugar-binding protein
1475	 63.86	0	1687593..1688660	+	355	119963242	-	AAur_1542	-	LacI family transcriptional regulator
1476	 62.97	0	1688632..1690092	-	486	119961097	-	AAur_1541	-	putative integral membrane protein
1477	 63.88	0	1690196..1691380	+	394	119962940	dxr	AAur_1543	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1478	 62.01	0	1691413..1692744	+	443	119961823	-	AAur_1544	-	zinc metalloprotease
1479	 62.24	0	1692809..1693102	+	97	119963419	-	AAur_1545	-	YCII-related domain-containing protein
1480	 62.21	0	1693151..1694317	+	388	119962180	ispG	AAur_1546	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1481	 64.26	0	1694328..1695158	+	276	119961012	-	AAur_1547	-	putative acetyltransferase, GNAT family protein
1482	 61.73	0	1695234..1695962	+	242	119960507	-	AAur_1548	-	putative lipoprotein
1483	 64.38	0	1695975..1696631	-	218	119962543	-	AAur_1549	-	transcriptional regulator
1484	 60.35	0	1696628..1697371	-	247	119964004	-	AAur_1550	-	DrrB family ABC transporter
1485	 64.59	0	1697380..1698150	-	256	119961462	-	AAur_1551	-	putative ABC transporter, ATP-binding protein
1486	 57.02	-2	1698327..1698440	+	37	119964058	-	AAur_1552	-	hypothetical protein
1487	 63.96	0	1698658..1700469	+	603	119963667	proS	AAur_1553	-	prolyl-tRNA synthetase
1488	 61.90	0	1700466..1701263	+	265	119963633	-	AAur_1554	-	putative integral membrane protein
1489	 66.77	+1	1701455..1702465	-	336	119962343	sph	AAur_1555	-	streptomycin 6-kinase
1490	 64.47	0	1702515..1703243	-	242	119961762	-	AAur_1556	-	putative integral membrane protein
1491	 65.98	+1	1703295..1704461	-	388	119963865	-	AAur_1557	-	hypothetical protein
1492	 60.29	0	1704492..1705103	+	203	119963357	-	AAur_1558	-	putative uncharacterized Bcr YhbC family protein
1493	 62.39	0	1705103..1706083	+	326	119962022	nusA	AAur_1559	-	transcription termination factor NusA
1494	 64.44	0	1706172..1706621	+	149	119960833	-	AAur_1560	-	putative protein of unknown function (DUF448)
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.