IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1355	 65.31	+1	1530295..1530735	-	146	119963627	-	AAur_1414	-	hypothetical protein
1356	 63.04	0	1530828..1532261	-	477	119964273	-	AAur_1415	-	sodium:dicarboxylate symporter family protein
1357	 63.76	0	1533359..1535041	-	560	119962547	-	AAur_1416	-	hypothetical protein
1358	 69.66	+2	1535108..1535341	-	77	119963376	-	AAur_1417	-	hypothetical protein
1359	 63.19	0	1535338..1536921	-	527	119962294	-	AAur_1418	-	propionyl-CoA carboxylase complex B subunit
1360	 63.27	0	1537205..1538029	+	274	119964067	-	AAur_1419	-	short chain dehydrogenase
1361	 64.04	0	1538097..1539047	+	316	119960598	-	AAur_1420	-	biotin--acetyl-CoA-carboxylase ligase
1362	 58.75	-1	1539040..1539633	+	197	119963943	-	AAur_1421	-	hypothetical protein
1363	 63.70	0	1539623..1540801	+	392	119964508	-	AAur_1422	-	putative adenylate cyclase
1364	 62.49	0	1541083..1547217	+	2044	119961128	-	AAur_1423	-	fibronectin like domain-containing protein
1365	 62.32	0	1547375..1553557	+	2060	119961102	-	AAur_1424	-	fibronectin like domain-containing protein
1366	 61.73	0	1553646..1554617	+	323	119960532	-	AAur_1425	-	putative methanol dehydrogenase regulatory protein
1367	 64.03	0	1554727..1556130	+	467	119960890	-	AAur_1426	-	hypothetical protein
1368	 64.25	0	1556127..1558613	+	828	119963301	-	AAur_1427	-	putative protease, transglutaminase-like
1369	 64.61	0	1558603..1560207	+	534	119964181	-	AAur_1428	-	transRDD family protein
1370	 62.57	0	1560204..1561130	+	308	119961143	-	AAur_1429	-	putative protein phosphatase
1371	 64.38	0	1561117..1563000	+	627	119960606	-	AAur_1430	-	hypothetical protein
1372	 64.14	0	1562997..1564817	+	606	119962082	-	AAur_1431	-	putative serine/threonine protein kinase
1373	 60.99	0	1564863..1565567	+	234	119963443	-	AAur_1432	-	hypothetical protein
1374	 64.28	0	1565564..1570006	+	1480	119963024	-	AAur_1433	-	putative FtsK/SpoIIIE family protein
1375	 62.07	0	1570044..1572350	+	768	119961355	ligA	AAur_1434	-	DNA ligase, NAD-dependent
1376	 66.55	+1	1572347..1573171	+	274	119960929	suhB	AAur_1435	-	inositol-1-monophosphotase
1377	 64.68	0	1573182..1574390	+	402	119961847	-	AAur_1436	-	hypothetical protein
1378	 65.12	0	1574412..1575446	-	344	119963226	-	AAur_1437	-	aldo/keto reductase family oxidoreductase
1379	 64.55	0	1575446..1576813	-	455	119962703	ntaA	AAur_1438	-	nitrilotriacetate monooxygenase component A
1380	 67.76	+1	1576848..1577576	-	242	119963911	-	AAur_1439	-	putative sulfonate ABC transporter, ATP-binding protein
1381	 65.27	+1	1577552..1578484	-	310	119964134	-	AAur_1440	-	putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
1382	 65.86	+1	1578487..1579596	-	369	119963471	-	AAur_1441	-	putative ABC-type sulfonate transport system
1383	 65.30	+1	1580054..1580566	+	170	119964236	-	AAur_1442	-	acetyltransferase, GNAT family protein
1384	 59.80	0	1580624..1581016	+	130	119962244	-	AAur_1443	-	endoribonuclease L-PSP family protein
1385	 64.09	0	1581087..1581746	-	219	119962861	-	AAur_1444	-	two-component system response regulator
1386	 65.73	+1	1581739..1583439	-	566	119963508	-	AAur_1445	-	putative signal transduction histidine kinase
1387	 63.68	0	1583638..1585146	+	502	119962568	citN	AAur_1446	-	citrate transporter
1388	 59.41	-1	1585304..1585606	-	100	119964497	-	AAur_1447	-	hypothetical protein
1389	 58.25	-1	1586100..1586396	+	98	119963886	gatC	AAur_1448	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1390	 63.99	0	1586402..1587970	+	522	119963344	gatA	AAur_1449	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1391	 61.56	0	1587970..1589478	+	502	119964494	gatB	AAur_1450	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1392	 65.95	+1	1589586..1590143	+	185	119961063	-	AAur_1452	-	hypothetical protein
1393	 62.35	0	1590140..1590973	-	277	119960512	-	AAur_1451	-	domain of unknown function (DUF323) protein
1394	 61.06	0	1591563..1592597	+	344	119961657	-	AAur_1453	-	putative transmembrane lipoprotein LplB
1395	 59.42	-1	1592639..1593562	+	307	119962897	-	AAur_1454	-	putative transmembrane lipoprotein LplC
1396	 62.33	0	1593629..1595287	+	552	119961033	-	AAur_1455	-	putative lipoprotein precursor lplA
1397	 64.77	0	1595344..1596396	+	350	119962199	-	AAur_1456	-	LacI family transcriptional regulator
1398	 62.78	0	1596423..1597607	+	394	119962849	-	AAur_1457	-	oxidoreductase family protein
1399	 65.69	+1	1597619..1598542	-	307	119962944	-	AAur_1458	-	LysR family transcriptional regulator
1400	 62.37	0	1598644..1599690	+	348	119963295	tdh	AAur_1459	-	L-threonine 3-dehydrogenase
1401	 63.65	0	1599753..1600946	+	397	119961542	kbl	AAur_1460	-	2-amino-3-ketobutyrate coenzyme A ligase
1402	 60.22	0	1601631..1601909	+	92	119960503	-	AAur_1461	-	ISAau1, transposase orfA
1403	 61.07	0	1601939..1602778	+	279	119964219	-	AAur_1462	-	ISAau1, transposase orfB
1404	 64.20	0	1602832..1603845	+	337	119961913	-	AAur_1463	-	FAD dependent oxidoreductase domain-containing protein
1405	 67.56	+1	1603857..1605086	+	409	119961066	hutI	AAur_1464	-	imidazolonepropionase
1406	 63.28	0	1605153..1609550	-	1465	119964370	-	AAur_1465	-	hypothetical protein
1407	 62.85	0	1609826..1610743	+	305	119963785	-	AAur_1466	-	SIS domain-containing protein
1408	 64.88	0	1610795..1611688	+	297	119964083	glk	AAur_1467	-	glucokinase
1409	 66.77	+1	1611685..1612653	+	322	119960510	-	AAur_1468	-	sugar kinase
1410	 63.10	0	1612650..1613489	+	279	119961051	-	AAur_1469	-	putative fructose/tagatose bisphosphate aldolase
1411	 63.01	0	1613513..1614304	+	263	119961758	-	AAur_1470	-	DeoR family transcriptional regulator
1412	 60.31	0	1614329..1615099	-	256	119963398	-	AAur_1471	-	hypothetical protein
1413	 60.98	0	1615098..1615871	+	257	119963965	-	AAur_1472	-	putative CAAX amino terminal protease family protein
1414	 61.07	0	1615993..1616760	-	255	119964436	-	AAur_1473	-	hypothetical protein
1415	 64.09	0	1616858..1618174	+	438	119962831	-	AAur_1474	-	O-acetylhomoserine sulfhydrylase
1416	 62.92	0	1618469..1619590	+	373	119963380	metX	AAur_1475	-	homoserine O-acetyltransferase
1417	 64.87	0	1619614..1620003	-	129	119964196	-	AAur_1476	-	hypothetical protein
1418	 63.51	0	1620084..1621256	-	390	119964411	-	AAur_1477	-	hypothetical protein
1419	 66.54	+1	1621286..1622056	-	256	119963968	-	AAur_1478	-	GDSL-like lipase/acylhydrolase domain-containing protein
1420	 60.32	0	1622109..1622849	+	246	119961479	-	AAur_1480	-	phospholipase/carboxylesterase family protein
1421	 59.21	-1	1622846..1623073	-	75	119960883	-	AAur_1479	-	S4 domain-containing protein
1422	 64.58	0	1623097..1624104	+	335	119961726	-	AAur_1481	-	hypothetical protein
1423	 61.83	0	1624253..1625638	+	461	119963161	glyS	AAur_1482	-	glycyl-tRNA synthetase
1424	 65.01	0	1625641..1626603	+	320	119962790	-	AAur_1483	-	hypothetical protein
1425	 64.05	0	1628233..1629720	+	495	119961626	-	AAur_1485	-	YibE/F-like family protein
1426	 65.01	0	1629810..1631015	+	401	119963532	-	AAur_1486	-	IMP dehydrogenase/GMP reductase domain-containing protein
1427	 62.87	0	1631080..1632396	+	438	119963858	-	AAur_1487	-	putative deoxyguanosinetriphosphate triphosphohydrolase
1428	 64.54	0	1632455..1634338	+	627	119962293	dnaG	AAur_1488	-	DNA primase
1429	 67.89	+2	1634703..1635110	-	135	119962233	-	AAur_1491	-	hypothetical protein
1430	 61.99	0	1635155..1636438	-	427	119963493	-	AAur_1492	-	esterase family protein
1431	 62.91	0	1636461..1638959	-	832	119964070	-	AAur_1493	-	putative integral membrane protein (DUF470, DUF471, DUF472)
1432	 67.20	+1	1639083..1639268	-	61	119960961	-	AAur_1494	-	hypothetical protein
1433	 61.95	0	1639286..1640515	-	409	119961166	-	AAur_1495	-	Bcr/CflA family drug resistance transporter
1434	 58.89	-1	1640690..1641538	+	282	119961642	-	AAur_1496	-	putative protein of unknown function (DUF1469)
1435	 59.62	-1	1641586..1642209	+	207	119962593	-	AAur_1497	-	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1436	 61.81	0	1642209..1643114	+	301	119963116	-	AAur_1498	-	putative integral membrane protein
1437	 61.15	0	1643222..1644418	+	398	119962484	-	AAur_1499	-	putative glycosyl transferase, group 1 family protein
1438	 62.70	0	1647595..1649358	-	587	119964040	-	AAur_1502	-	M23 peptidase domain-containing protein
1439	 62.01	0	1650758..1651594	+	278	119963267	tsf	AAur_1504	-	translation elongation factor Ts
1440	 61.97	0	1651623..1652453	+	276	119964115	pyrH	AAur_1505	-	uridylate kinase
1441	 61.65	0	1652555..1653112	+	185	119963211	frr	AAur_1506	-	ribosome recycling factor
1442	 64.10	0	1653112..1654047	+	311	119964036	-	AAur_1507	-	putative phosphatidate cytidylyltransferase
1443	 63.08	0	1654069..1654653	+	194	119963626	-	AAur_1508	-	hypothetical protein
1444	 59.71	-1	1654672..1655217	-	181	119963919	-	AAur_1509	-	hypothetical protein
1445	 63.87	0	1655419..1656885	-	488	119961360	-	AAur_1510	-	putative sodium:solute symporter family protein
1446	 64.46	0	1656882..1657244	-	120	119960927	-	AAur_1511	-	putative integral membrane protein
1447	 64.56	0	1657241..1657951	-	236	119963845	-	AAur_1512	-	two-component system regulatory protein
1448	 64.09	0	1657982..1659184	-	400	119964352	-	AAur_1513	-	putative signal transduction histidine kinase
1449	 56.17	-2	1659393..1659773	+	126	119964226	-	AAur_1514	-	hypothetical protein
1450	 61.91	0	1659770..1661389	+	539	119960626	-	AAur_1515	-	putative sodium:solute symporter family protein
1451	 60.78	0	1661508..1662527	-	339	119962368	-	AAur_1516	-	hypothetical protein
1452	 66.49	+1	1662601..1663182	-	193	119960556	-	AAur_1517	-	hypothetical protein
1453	 60.54	0	1663224..1663631	-	135	119962267	-	AAur_1518	-	hypothetical protein
1454	 61.52	0	1663773..1664471	-	232	119961043	-	AAur_1519	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.