IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
89	 65.18	+1	94280..94885	+	201	119960609	-	AAur_0092	-	hypothetical protein
90	 63.51	0	95128..95634	+	168	119964517	-	AAur_0093	-	hypothetical protein
91	 64.28	0	95757..97430	-	557	119962162	pgm	AAur_0094	-	phosphoglucomutase
92	 63.89	0	97615..98370	-	251	119960897	-	AAur_0095	-	short chain dehydrogenase/reductase family oxidoreductase
93	 65.56	+1	98563..99192	+	209	119962264	-	AAur_0096	-	hypothetical protein
94	 62.54	0	99277..100803	-	508	119961800	-	AAur_0097	-	dipeptide/tripeptide permease (peptide:H+ symporter)
95	 63.71	0	102260..103003	-	247	119961031	-	AAur_0099	-	S51 family peptidase
96	 62.39	0	103158..103484	+	108	119962407	-	AAur_0100	-	putative rhodanese-related sulfurtransferase
97	 65.70	+1	103517..104449	+	310	119961958	pheA	AAur_0101	-	prephenate dehydratase
98	 62.24	0	104781..105842	-	353	119960489	-	AAur_0102	-	diacylglycerol kinase catalytic subunit
99	 62.84	0	105955..107235	+	426	119963396	serS	AAur_0103	-	seryl-tRNA synthetase
100	 59.38	-1	107266..108294	-	342	119962041	-	AAur_0104	-	hypothetical protein
101	 60.52	0	108513..109358	+	281	119962827	-	AAur_0105	-	putative haloacid dehalogenase-like hydrolase
102	 61.99	0	109397..110251	+	284	119962033	-	AAur_0106	-	transcriptional regulator
103	 58.08	-1	110330..110725	+	131	119961716	-	AAur_0107	-	putative integral membrane protein
104	 59.92	0	110742..111482	-	246	119960576	-	AAur_0108	-	ANTAR domain-containing protein
105	 61.13	0	111624..112400	+	258	119963836	-	AAur_0109	-	putative RNA polymerase sigma (70) factor
106	 67.50	+1	112408..113370	-	320	119960558	-	AAur_0110	-	heptosyltransferase family protein
107	 63.78	0	113457..114011	+	184	119960922	-	AAur_0111	-	haloacid dehalogenase-like hydrolase protein
108	 67.22	+1	114008..115096	+	362	119963963	-	AAur_0112	-	heptosyltransferase family protein
109	 66.21	+1	115093..116178	+	361	119964406	-	AAur_0113	-	hypothetical protein
110	 66.19	+1	116175..117443	+	422	119962821	-	AAur_0114	-	putative glycosyl transferase, group 1 family protein
111	 67.14	+1	117500..118132	+	210	119963287	gmhA	AAur_0115	-	phosphoheptose isomerase
112	 68.58	+2	118129..119538	+	469	119961074	rfaE	AAur_0116	-	rfaE bifunctional protein
113	 66.52	+1	119570..120265	+	231	119961498	-	AAur_0118	-	short chain dehydrogenase/reductase family oxidoreductase
114	 65.83	+1	120231..121550	-	439	119960619	-	AAur_0117	-	heptosyltransferase family protein
115	 64.89	0	121565..123142	+	525	119963193	-	AAur_0119	-	ADP-heptose synthase
116	 65.70	+1	123153..124187	+	344	119962296	-	AAur_0120	-	putative NAD dependent epimerase/dehydratase family protein
117	 64.15	0	124191..125264	-	357	119962966	-	AAur_0121	-	putative integral membrane protein
118	 64.26	0	125352..126389	+	345	119961399	-	AAur_0122	-	hypothetical protein
119	 61.34	0	126386..126817	+	143	119963630	-	AAur_0123	-	putative protein of unknown function (DUF1469)
120	 67.34	+1	126814..127410	+	198	119964046	-	AAur_0124	-	hypothetical protein
121	 64.67	0	127493..128092	-	199	119960547	-	AAur_0125	-	hypothetical protein
122	 63.52	0	128151..128786	-	211	119961517	-	AAur_0126	-	hypothetical protein
123	 65.41	+1	128773..129408	-	211	119962214	-	AAur_0127	-	hypothetical protein
124	 63.58	0	129456..130232	-	258	119961020	-	AAur_0128	-	hypothetical protein
125	 63.12	0	130229..131242	-	337	119963792	-	AAur_0129	-	hypothetical protein
126	 65.70	+1	132078..133523	+	481	119964179	dacB	AAur_0131	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
127	 63.46	0	133584..134705	+	373	119963473	-	AAur_0132	-	hypothetical protein
128	 65.08	0	134798..135868	+	356	119962110	-	AAur_0133	-	putative tRNA(Ile)-lysidine synthetase
129	 59.24	-1	135900..136451	+	183	119960531	hpt	AAur_0134	-	hypoxanthine phosphoribosyltransferase
130	 62.16	0	136679..136789	-	36	119963483	-	AAur_0135	-	hypothetical protein
131	 65.72	+1	136850..137800	+	316	119963272	-	AAur_0136	-	hypothetical protein
132	 58.79	-1	137863..138840	-	325	119962701	-	AAur_0137	-	hypothetical protein
133	 61.64	0	139278..141347	+	689	119963542	-	AAur_0138	-	putative cell division protein (ftsH)
134	 61.95	0	141357..141992	+	211	119960970	folE	AAur_0139	-	GTP cyclohydrolase I
135	 64.02	0	141998..142903	+	301	119960875	folP	AAur_0140	-	dihydropteroate synthase
136	 60.56	0	142916..143275	+	119	119961807	folB	AAur_0141	-	dihydroneopterin aldolase
137	 64.29	0	143272..143817	+	181	119963257	folK	AAur_0142	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
138	 60.92	0	143814..144335	+	173	119964087	-	AAur_0143	-	putative integral membrane protein
139	 61.79	0	144316..144828	+	170	119960886	-	AAur_0144	-	putative integral membrane protein
140	 63.87	0	144825..146396	+	523	119962312	-	AAur_0145	-	hypothetical protein
141	 65.90	+1	146389..147297	+	302	119961746	-	AAur_0146	-	putative NADP oxidoreductase coenzyme F420-dependent family protein
142	 63.90	0	147303..148205	+	300	119961599	panC	AAur_0147	-	pantoate--beta-alanine ligase
143	 62.19	0	148311..149828	+	505	119962723	lmrB	AAur_0148	-	lincomycin resistance protein
144	 60.16	0	149916..150038	-	40	119964151	-	AAur_0149	-	hypothetical protein
145	 56.59	-2	156151..156696	-	181	119963787	-	AAur_0153	-	hypothetical protein
146	 60.68	0	156742..157326	-	194	119961436	-	AAur_0154	-	HhH-GPD superfamily base excision DNA repair protein
147	 60.12	0	163440..164294	-	284	119962101	-	AAur_0158	-	LysR family transcriptional regulator
148	 63.26	0	164321..165289	+	322	119961554	-	AAur_0159	-	Type I phosphodiesterase / nucleotide pyrophosphatase family protein
149	 61.19	0	165286..166143	+	285	119964065	-	AAur_0160	-	hypothetical protein
150	 63.79	0	166168..167001	-	277	119961774	-	AAur_0161	-	putative hydrolase, alpha/beta fold family protein
151	 63.98	0	167065..167919	-	284	119961110	-	AAur_0162	-	putative hydrolase
152	 65.66	+1	167929..168825	-	298	119962243	-	AAur_0163	-	hypothetical protein
153	 61.83	0	168901..170430	+	509	119963343	lysS	AAur_0164	-	lysyl-tRNA synthetase
154	 54.02	-2	170433..170606	+	57	119962809	-	AAur_0165	-	hypothetical protein
155	 59.02	-1	170738..171064	+	108	119964528	-	AAur_0166	-	hypothetical protein
156	 62.33	0	171417..173909	+	830	119961353	-	AAur_0167	-	putative ATP-dependent Clp protease, ATP-binding subunit
157	 67.41	+1	173989..175197	+	402	119961182	-	AAur_0168	-	putative glucosyltransferase
158	 65.77	+1	175267..177384	+	705	119961208	-	AAur_0169	-	putative prolyl oligopeptidase family protein
159	 60.39	0	177560..178069	+	169	119960738	-	AAur_0170	-	N-acetylglutamate synthase
160	 62.94	0	178240..179688	+	482	119961935	mcrA	AAur_0171	-	mitomycin radical oxidase
161	 57.67	-1	179699..179887	+	62	119962500	-	AAur_0172	-	hypothetical protein
162	 64.77	0	180035..181036	+	333	119962689	dhaK	AAur_0173	-	dihydroxyacetone kinase, DhaK subunit
163	 68.17	+2	181039..181701	+	220	119961802	dhaK2	AAur_0174	-	dihydroxyacetone kinase, L subunit
164	 64.21	0	181698..182390	+	230	119963431	-	AAur_0175	-	dihydroxyacetone kinase, phosphotransfer subunit/phosphocarrier protein HPr
165	 55.14	-2	182414..182656	+	80	119961572	-	AAur_0176	-	putative CsbD-like family protein
166	 61.30	0	182752..183012	+	86	119960995	-	AAur_0177	-	hypothetical protein
167	 58.89	-1	183016..183375	+	119	119960687	-	AAur_0178	-	putative glyoxalase family protein
168	 63.94	0	183389..183901	-	170	119963817	-	AAur_0179	-	putative glyoxalase family protein
169	 64.58	0	183981..184793	+	270	119963642	-	AAur_0180	-	AraC family transcriptional regulator
170	 59.48	-1	184957..185109	+	50	119963279	-	AAur_0181	-	hypothetical protein
171	 63.25	0	185116..185583	-	155	119963589	-	AAur_0182	-	hypothetical protein
172	 67.51	+1	185720..186670	-	316	119964372	-	AAur_0183	-	putative A/G-specific adenine glycosylase
173	 65.70	+1	186807..187529	+	240	119960777	-	AAur_0184	-	hypothetical protein
174	 63.05	0	187568..188644	-	358	119961905	-	AAur_0185	-	DNA integrity scanning protein DisA
175	 66.88	+1	188879..190714	-	611	119962595	atzF	AAur_0186	-	allophanate hydrolase
176	 64.79	0	190711..194385	-	1224	119963029	uca	AAur_0187	-	urea carboxylase
177	 62.86	0	194382..195038	-	218	119961172	-	AAur_0188	-	hypothetical protein
178	 65.65	+1	195035..195922	-	295	119961647	-	AAur_0189	-	hypothetical protein
179	 63.91	0	195976..197499	-	507	119963711	-	AAur_0190	-	putative amino acid permease
180	 64.38	0	197728..198426	+	232	119964272	-	AAur_0192	-	TetR family transcriptional regulator
181	 59.46	-1	198423..199046	-	207	119961249	-	AAur_0191	-	putative integral membrane protein
182	 65.50	+1	199102..200475	-	457	119961343	radA	AAur_0193	-	DNA repair protein RadA
183	 63.28	0	200515..201753	-	412	119961945	-	AAur_0194	-	hypothetical protein
184	 64.71	0	201892..203013	+	373	119962495	pstS	AAur_0195	-	phosphate ABC transporter, phosphate-binding protein
185	 63.76	0	203223..204083	+	286	119963527	pstC	AAur_0196	-	phosphate ABC transporter, permease protein PstC
186	 63.50	0	204084..205187	+	367	119964241	pstA	AAur_0197	-	phosphate ABC transporter, permease protein PstA
187	 61.15	0	205256..206035	+	259	119964247	pstB	AAur_0198	-	phosphate ABC transporter, ATP-binding protein
188	 65.39	+1	206132..207148	-	338	119960786	-	AAur_0199	-	putative phosphate transporter
62.44	MEAN

2.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.