IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1147	 63.98	0	1271408..1272712	-	434	119964278	-	AAur_1194	-	putative transmembrane efflux protein (MFS)
1148	 64.06	0	1272812..1273771	-	319	119960726	murQ	AAur_1195	-	N-acetylmuramic acid-6-phosphate etherase
1149	 67.09	+1	1273746..1274693	-	315	119963082	-	AAur_1196	-	putative BadF/BadG/BcrA/BcrD ATPase family protein
1150	 62.05	0	1275044..1276018	+	324	119964262	-	AAur_1197	-	hypothetical protein
1151	 67.27	+1	1276379..1278049	+	556	119960764	purH	AAur_1198	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1152	 61.35	0	1278148..1279257	-	369	119961997	-	AAur_1199	-	hypothetical protein
1153	 64.36	0	1279364..1279666	-	100	119963153	-	AAur_1200	-	hypothetical protein
1154	 63.33	0	1279730..1281949	+	739	119960973	-	AAur_1201	-	isocitrate dehydrogenase, NADP-dependent
1155	 65.32	+1	1282013..1283122	-	369	119962493	soxA	AAur_1202	-	sarcosine oxidase, monomeric form
1156	 64.68	0	1283214..1284068	-	284	119963848	phnE	AAur_1203	-	phosphonate ABC transporter, permease protein
1157	 66.17	+1	1284065..1284871	-	268	119961385	phnC	AAur_1204	-	phosphonate ABC transporter, ATP-binding protein
1158	 65.46	+1	1284871..1285785	-	304	119963775	phnD	AAur_1205	-	phosphate-binding protein of phosphonate ABC transporter
1159	 65.55	+1	1285828..1287081	-	417	119960624	-	AAur_1206	-	FAD dependent oxidoreductase domain-containing protein
1160	 66.28	+1	1287209..1287976	+	255	119961179	-	AAur_1207	-	GntR family transcriptional regulator
1161	 65.18	+1	1287973..1288644	+	223	119960741	-	AAur_1208	-	putative phosphonoacetaldehyde hydrolase
1162	 65.56	+1	1288685..1289134	+	149	119961331	-	AAur_1209	-	DoxX family protein
1163	 62.48	0	1290475..1291167	-	230	119963275	-	AAur_1211	-	putative ABC transporter, ATP-binding protein
1164	 65.02	0	1291170..1292627	-	485	119961536	-	AAur_1212	-	putative ABC transporter permease protein
1165	 61.98	0	1292800..1293909	-	369	119960655	-	AAur_1213	-	putative sugar ABC transporter
1166	 61.31	0	1293952..1295220	-	422	119962948	-	AAur_1214	-	putative sugar ABC transporter permease protein
1167	 59.28	-1	1295265..1296821	-	518	119962256	-	AAur_1215	-	putative sugar ABC transporter, ATP-binding protein
1168	 63.14	0	1296952..1298142	-	396	119960677	-	AAur_1216	-	ROK family transcriptional regulator
1169	 66.42	+1	1298457..1299260	+	267	119964300	-	AAur_1218	-	carbon-nitrogen family hydrolase
1170	 65.80	+1	1299257..1300870	-	537	119963839	-	AAur_1217	-	putative regulatory protein
1171	 65.90	+1	1300860..1302032	-	390	119963624	alr	AAur_1219	-	alanine racemase
1172	 62.90	0	1302203..1303717	+	504	119963184	-	AAur_1220	-	putative amino acid permease
1173	 63.79	0	1303789..1305420	+	543	119962720	-	AAur_1221	-	putative tryptophan 2-monooxygenase
1174	 59.94	0	1305532..1306245	-	237	119960632	-	AAur_1222	-	hypothetical protein
1175	 63.80	0	1306242..1306625	-	127	119964469	-	AAur_1223	-	PadR family transcriptional regulator
1176	 63.79	0	1306737..1307258	-	173	119963798	-	AAur_1224	-	hexapeptide repeat-containing transferase
1177	 63.81	0	1307332..1307997	-	221	119963017	-	AAur_1225	-	hypothetical protein
1178	 62.93	0	1308019..1308954	-	311	119964276	purU	AAur_1226	-	formyltetrahydrofolate deformylase
1179	 65.12	0	1309108..1310400	+	430	119962515	glyA	AAur_1227	-	serine hydroxymethyltransferase
1180	 65.77	+1	1310550..1311443	+	297	119960888	-	AAur_1228	-	putative tetrahydrofolate dehydrogenase/cyclohydrolase
1181	 63.68	0	1311562..1312599	+	345	119963373	-	AAur_1229	-	putative ABC transporter, ATP-binding protein
1182	 62.16	0	1312649..1313446	+	265	119964037	-	AAur_1230	-	putative ABC-2 type transporter
1183	 61.51	0	1313443..1314276	+	277	119960898	-	AAur_1231	-	putative ABC-type multidrug transport system, permease component
1184	 63.05	0	1314303..1315628	-	441	119963669	-	AAur_1232	-	major facilitator transporter
1185	 66.02	+1	1315669..1316748	-	359	119961832	-	AAur_1233	-	hypothetical protein
1186	 64.16	0	1316915..1317952	+	345	119960788	-	AAur_1234	-	LacI family transcriptional regulator
1187	 62.08	0	1318033..1318599	+	188	119961941	-	AAur_1235	-	hypothetical protein
1188	 60.79	0	1318610..1319443	+	277	119962536	xth	AAur_1236	-	exodeoxyribonuclease III
1189	 62.04	0	1319464..1320588	+	374	119963213	trpS	AAur_1237	-	tryptophanyl-tRNA synthetase
1190	 60.14	0	1320704..1321270	+	188	119961268	-	AAur_1238	-	putative 2',5' RNA ligase family protein
1191	 61.06	0	1321356..1322282	+	308	119962009	-	AAur_1239	-	ribonuclease BN-like family protein
1192	 65.23	+1	1322477..1324699	-	740	119961924	-	AAur_1240	-	hypothetical protein
1193	 61.27	0	1324831..1325793	-	320	119961310	-	AAur_1241	-	glycoside hydrolase family protein
1194	 60.95	0	1325962..1327203	+	413	119960819	-	AAur_1242	-	putative extracellular sugar-binding protein
1195	 62.45	0	1328140..1328922	-	260	119961009	sdhB	AAur_1244	-	succinate dehydrogenase iron-sulfur subunit
1196	 61.81	0	1328922..1330670	-	582	119960553	sdhA	AAur_1245	-	succinate dehydrogenase flavoprotein subunit
1197	 60.59	0	1330822..1331298	-	158	119964495	-	AAur_1246	-	putative succinate dehydrogenase, membrane subunit (sdhD)
1198	 59.84	0	1331302..1331682	-	126	119963360	sdhC	AAur_1247	-	succinate dehydrogenase, cytochrome b556 subunit
1199	 63.58	0	1331936..1333069	+	377	119962057	-	AAur_1248	-	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1200	 64.26	0	1333180..1334385	+	401	119961922	-	AAur_1249	-	putative metal-dependent amidase/aminoacylase/carboxypeptidase
1201	 65.61	+1	1334470..1334940	+	156	119960517	-	AAur_1250	-	MarR family transcriptional regulator
1202	 64.58	0	1334993..1335424	+	143	119964523	ohr	AAur_1251	-	organic hydroperoxide resistance protein
1203	 64.52	0	1335421..1336443	+	340	119963945	-	AAur_1252	-	putative quinone oxidoreductase
1204	 58.68	-1	1336557..1337795	+	412	119961917	-	AAur_1253	-	putative basic membrane lipoprotein
1205	 59.75	0	1337913..1339430	+	505	119961734	-	AAur_1254	-	putative sugar ABC transporter, ATP-binding protein
1206	 60.49	0	1339588..1340769	+	393	119960740	-	AAur_1255	-	putative sugar ABC transporter, permease protein
1207	 62.90	0	1341099..1342055	+	318	119960583	-	AAur_1256	-	putative sugar ABC transporter, permease protein
1208	 59.85	0	1342052..1342462	+	136	119964185	cdd	AAur_1257	-	cytidine deaminase
1209	 64.68	0	1342459..1343769	+	436	119963509	deoA	AAur_1258	-	thymidine phosphorylase
1210	 62.98	0	1343859..1344509	+	216	119962785	-	AAur_1259	-	DedA family membrane protein
1211	 61.33	0	1344702..1345394	+	230	119962404	-	AAur_1260	-	DedA family membrane protein
1212	 63.34	0	1345423..1346565	+	380	119961810	add	AAur_1261	-	adenosine deaminase
1213	 64.32	0	1346543..1347223	+	226	119960829	-	AAur_1262	-	putative MazG family protein
1214	 63.62	0	1347340..1348620	+	426	119961453	eno	AAur_1263	-	phosphopyruvate hydratase
1215	 63.62	0	1348753..1349541	+	262	119961629	-	AAur_1264	-	hypothetical protein
1216	 66.27	+1	1349547..1350293	+	248	119962077	-	AAur_1265	-	putative protein of unknown function (DUF501)
1217	 65.53	+1	1350290..1351258	+	322	119962743	-	AAur_1266	-	putative exopolyphosphatase (ppx)
1218	 66.03	+1	1351255..1352661	+	468	119963382	-	AAur_1267	-	subtilase family protein
1219	 64.60	0	1352700..1354154	+	484	119963231	-	AAur_1268	-	putative NADH dehydrogenase
1220	 65.26	+1	1354258..1355178	+	306	119963713	-	AAur_1269	-	acetyltransferase, GNAT family protein
1221	 61.93	0	1355566..1356852	+	428	119962584	braC	AAur_1271	-	branched-chain amino acid ABC transporter
1222	 64.00	0	1356965..1357903	+	312	119961919	-	AAur_1272	-	diacylglycerol kinase catalytic subunit
1223	 60.96	0	1357983..1358753	-	256	119960936	-	AAur_1273	-	branched-chain amino acid ABC transporter, ATP-binding protein
1224	 59.94	0	1358750..1359700	-	316	119961378	-	AAur_1274	-	putative branched-chain amino acid ABC transporter, ATP-binding protein
1225	 59.03	-1	1359739..1360707	-	322	119961868	-	AAur_1275	-	putative branched-chain amino acid transport system, permease component
1226	 61.78	0	1360717..1361616	-	299	119962551	-	AAur_1276	-	branched chain amino acid ABC transporter permease
1227	 62.61	0	1362457..1363368	+	303	119962978	-	AAur_1277	-	putative integral membrane protein
1228	 65.29	+1	1363499..1364737	-	412	119960828	-	AAur_1278	-	acetyl-CoA acetyltransferase
1229	 65.63	+1	1364801..1365961	-	386	119961698	galK	AAur_1279	-	galactokinase
1230	 65.04	0	1365958..1367127	-	389	119962307	galT	AAur_1280	-	galactose-1-phosphate uridylyltransferase
1231	 65.22	+1	1367190..1368158	+	322	119961606	-	AAur_1281	-	putative aldose 1-epimerase
1232	 64.09	0	1368242..1369522	+	426	119962201	-	AAur_1282	-	putative permease
1233	 64.08	0	1369526..1370764	+	412	119964071	ilvA	AAur_1283	-	threonine dehydratase
1234	 60.81	0	1370779..1371393	+	204	119961411	-	AAur_1284	-	rhomboid family membrane protein
1235	 62.22	0	1371486..1371980	-	164	119963879	-	AAur_1285	-	putative transcription elongation factor GreA
1236	 59.91	0	1372133..1372591	-	152	119961799	-	AAur_1286	-	hypothetical protein
1237	 64.24	0	1372791..1373573	+	260	119963167	-	AAur_1287	-	hypothetical protein
1238	 66.93	+1	1373605..1373988	+	127	119961584	-	AAur_1288	-	hypothetical protein
1239	 66.85	+1	1373960..1376161	+	733	119964033	-	AAur_1289	-	hypothetical protein
1240	 61.06	0	1376177..1376818	-	213	119964465	-	AAur_1290	-	putative membrane protein, hemolysin III-like protein
1241	 61.46	0	1376926..1377732	+	268	119962556	uppS	AAur_1291	-	undecaprenyl diphosphate synthase
1242	 62.45	0	1377776..1379365	+	529	119964265	-	AAur_1292	-	putative ATPase
1243	 60.12	0	1379473..1379976	-	167	119963724	-	AAur_1293	-	hypothetical protein
1244	 63.22	0	1380159..1380884	-	241	119961313	-	AAur_1294	-	hypothetical protein
1245	 64.67	0	1380982..1381533	+	183	119960947	-	AAur_1295	-	putative type IV leader peptidase family protein
1246	 62.47	0	1382209..1382685	+	158	119962459	-	AAur_1296	-	putative mutT/nudix family protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.