IslandPathversion 1.0

IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.44 STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1093	 61.48	0	1211897..1212397	-	166	119963480	-	AAur_1138	-	acetyltransferase, GNAT family protein
1094	 64.67	0	1212450..1214807	-	785	119963829	-	AAur_1139	-	beta-D-xylosidase
1095	 65.67	+1	1215009..1216115	+	368	119964295	-	AAur_1140	-	oxidoreductase family protein
1096	 63.24	0	1216144..1217106	+	320	119961876	-	AAur_1141	-	hypothetical protein
1097	 64.44	0	1217174..1217890	+	238	119960855	-	AAur_1142	-	cupin domain-containing protein
1098	 64.91	0	1217914..1218936	+	340	119961058	-	AAur_1143	-	LacI family transcriptional regulator
1099	 60.40	0	1218946..1219248	-	100	119963555	-	AAur_1144	-	hypothetical protein
1100	 58.86	-1	1219285..1220193	+	302	119964225	-	AAur_1145	-	ANTAR domain-containing protein
1101	 64.98	0	1220251..1221615	+	454	119963885	-	AAur_1146	-	major facilitator transporter
1102	 66.10	+1	1221672..1222199	+	175	119961862	-	AAur_1147	-	transcriptional regulator
1103	 62.55	0	1222259..1223254	+	331	119962301	-	AAur_1148	-	oxidoreductase
1104	 60.00	0	1223281..1224135	+	284	119961857	-	AAur_1149	-	hydrolase alpha/beta fold domain-containing protein
1105	 59.70	-1	1224164..1224766	+	200	119962351	-	AAur_1150	-	TetR family transcriptional regulator
1106	 59.18	-1	1224780..1225967	-	395	119963252	-	AAur_1151	-	putative membrane protein, tellurium resistance
1107	 58.75	-1	1227573..1228355	-	260	119962719	-	AAur_1153	-	hypothetical protein
1108	 57.69	-1	1229260..1229994	-	244	119964330	-	AAur_1155	-	hypothetical protein
1109	 55.68	-2	1230063..1230881	-	272	119963500	-	AAur_1156	-	hypothetical protein
1110	 61.90	0	1231272..1231775	-	167	119962996	-	AAur_1157	-	ArsR family transcriptional regulator
1111	 57.19	-1	1231912..1233558	-	548	119962614	-	AAur_1158	-	putative RNA polymerase sigma (70) factor
1112	 61.90	0	1233683..1234186	-	167	119962175	-	AAur_1159	-	MarR family transcriptional regulator
1113	 63.21	0	1234274..1235200	+	308	119960494	-	AAur_1160	-	putative transmembrane protein
1114	 60.00	0	1235434..1235838	-	134	119963366	-	AAur_1161	-	hypothetical protein
1115	 52.58	-2	1235937..1236227	-	96	119962224	-	AAur_1162	-	hypothetical protein
1116	 51.25	-2	1236528..1237604	-	358	119964326	-	AAur_1163	-	hypothetical protein
1117	 55.74	-2	1237619..1240447	-	942	119962574	-	AAur_1164	-	hypothetical protein
1118	 51.00	-2	1240431..1242338	-	635	119962382	-	AAur_1165	-	hypothetical protein
1119	 57.58	-1	1244453..1244551	+	32	119963935	-	AAur_1166	-	hypothetical protein
1120	 61.06	0	1244627..1246018	+	463	119961352	-	AAur_1167	-	putative amino acid permease
1121	 63.36	0	1246049..1246684	-	211	119961676	-	AAur_1168	-	putative oxidoreductase, short chain dehydrogenase/reductase family protein
1122	 61.33	0	1246772..1247146	-	124	119962183	-	AAur_1169	-	hypothetical protein
1123	 64.34	0	1247192..1248436	-	414	119961653	-	AAur_1170	-	putative flavin-binding monooxygenase-like
1124	 61.67	0	1249104..1249703	-	199	119960601	-	AAur_1171	-	hypothetical protein
1125	 62.32	0	1249712..1250056	-	114	119964376	-	AAur_1172	-	hypothetical protein
1126	 61.46	0	1250112..1250495	+	127	119961742	-	AAur_1173	-	hypothetical protein
1127	 54.90	-2	1250886..1251089	+	67	119962819	-	AAur_1174	-	putative cold shock protein
1128	 57.22	-1	1251167..1252108	-	313	119963972	-	AAur_1175	-	putative integral membrane protein
1129	 49.76	-2	1252101..1252727	-	208	119964501	-	AAur_1176	-	putative ABC transporter, ATP-binding protein
1130	 51.52	-2	1252794..1253486	-	230	119960904	-	AAur_1177	-	hypothetical protein
1131	 59.41	-1	1253887..1256490	+	867	119961557	-	AAur_1178	-	LuxR family transcriptional regulator
1132	 63.24	0	1256512..1257765	+	417	119963043	-	AAur_1180	-	putative amino acid permease
1133	 61.93	0	1257762..1259048	-	428	119962710	-	AAur_1179	-	putative transmembrane efflux protein (MFS)
1134	 61.02	0	1259413..1259979	-	188	119963386	-	AAur_1181	-	alpha/Beta hydrolase family protein
1135	 65.30	+1	1260030..1261415	-	461	119961344	-	AAur_1182	-	UDP-glucose 6-dehydrogenase
1136	 62.91	0	1261412..1262581	-	389	119960778	-	AAur_1183	-	putative glycosyl transferase, group 1 family protein
1137	 48.83	-2	1263248..1263886	-	212	119961450	-	AAur_1184	-	HNH endonuclease family protein
1138	 49.36	-2	1263883..1265217	-	444	119962983	-	AAur_1185	-	hypothetical protein
1139	 65.14	+1	1265322..1265714	-	130	119961592	-	AAur_1186	-	MerR family transcriptional regulator
1140	 61.94	0	1265868..1266290	+	140	119963276	-	AAur_1187	-	putative heat shock protein
1141	 65.83	+1	1266424..1266900	+	158	119961877	-	AAur_1188	-	DnaJ domain-containing protein
1142	 65.08	0	1266897..1267274	+	125	119963861	-	AAur_1189	-	hypothetical protein
1143	 65.13	0	1267422..1268459	+	345	119961359	-	AAur_1190	-	glyoxalase family protein
1144	 65.54	+1	1268934..1270265	+	443	119962968	-	AAur_1191	-	putative integral membrane protein
1145	 60.00	0	1270320..1270769	-	149	119964165	-	AAur_1192	-	hypothetical protein
1146	 61.75	0	1270781..1271350	+	189	119960779	purN	AAur_1193	-	phosphoribosylglycinamide formyltransferase
1147	 63.98	0	1271408..1272712	-	434	119964278	-	AAur_1194	-	putative transmembrane efflux protein (MFS)
1148	 64.06	0	1272812..1273771	-	319	119960726	murQ	AAur_1195	-	N-acetylmuramic acid-6-phosphate etherase
1149	 67.09	+1	1273746..1274693	-	315	119963082	-	AAur_1196	-	putative BadF/BadG/BcrA/BcrD ATPase family protein
1150	 62.05	0	1275044..1276018	+	324	119964262	-	AAur_1197	-	hypothetical protein
1151	 67.27	+1	1276379..1278049	+	556	119960764	purH	AAur_1198	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1152	 61.35	0	1278148..1279257	-	369	119961997	-	AAur_1199	-	hypothetical protein
1153	 64.36	0	1279364..1279666	-	100	119963153	-	AAur_1200	-	hypothetical protein
1154	 63.33	0	1279730..1281949	+	739	119960973	-	AAur_1201	-	isocitrate dehydrogenase, NADP-dependent
1155	 65.32	+1	1282013..1283122	-	369	119962493	soxA	AAur_1202	-	sarcosine oxidase, monomeric form
1156	 64.68	0	1283214..1284068	-	284	119963848	phnE	AAur_1203	-	phosphonate ABC transporter, permease protein
1157	 66.17	+1	1284065..1284871	-	268	119961385	phnC	AAur_1204	-	phosphonate ABC transporter, ATP-binding protein
1158	 65.46	+1	1284871..1285785	-	304	119963775	phnD	AAur_1205	-	phosphate-binding protein of phosphonate ABC transporter
1159	 65.55	+1	1285828..1287081	-	417	119960624	-	AAur_1206	-	FAD dependent oxidoreductase domain-containing protein
1160	 66.28	+1	1287209..1287976	+	255	119961179	-	AAur_1207	-	GntR family transcriptional regulator
1161	 65.18	+1	1287973..1288644	+	223	119960741	-	AAur_1208	-	putative phosphonoacetaldehyde hydrolase
1162	 65.56	+1	1288685..1289134	+	149	119961331	-	AAur_1209	-	DoxX family protein
1163	 62.48	0	1290475..1291167	-	230	119963275	-	AAur_1211	-	putative ABC transporter, ATP-binding protein
1164	 65.02	0	1291170..1292627	-	485	119961536	-	AAur_1212	-	putative ABC transporter permease protein
1165	 61.98	0	1292800..1293909	-	369	119960655	-	AAur_1213	-	putative sugar ABC transporter
1166	 61.31	0	1293952..1295220	-	422	119962948	-	AAur_1214	-	putative sugar ABC transporter permease protein
1167	 59.28	-1	1295265..1296821	-	518	119962256	-	AAur_1215	-	putative sugar ABC transporter, ATP-binding protein
1168	 63.14	0	1296952..1298142	-	396	119960677	-	AAur_1216	-	ROK family transcriptional regulator
1169	 66.42	+1	1298457..1299260	+	267	119964300	-	AAur_1218	-	carbon-nitrogen family hydrolase
1170	 65.80	+1	1299257..1300870	-	537	119963839	-	AAur_1217	-	putative regulatory protein
1171	 65.90	+1	1300860..1302032	-	390	119963624	alr	AAur_1219	-	alanine racemase
1172	 62.90	0	1302203..1303717	+	504	119963184	-	AAur_1220	-	putative amino acid permease
1173	 63.79	0	1303789..1305420	+	543	119962720	-	AAur_1221	-	putative tryptophan 2-monooxygenase
1174	 59.94	0	1305532..1306245	-	237	119960632	-	AAur_1222	-	hypothetical protein
1175	 63.80	0	1306242..1306625	-	127	119964469	-	AAur_1223	-	PadR family transcriptional regulator
1176	 63.79	0	1306737..1307258	-	173	119963798	-	AAur_1224	-	hexapeptide repeat-containing transferase
1177	 63.81	0	1307332..1307997	-	221	119963017	-	AAur_1225	-	hypothetical protein
1178	 62.93	0	1308019..1308954	-	311	119964276	purU	AAur_1226	-	formyltetrahydrofolate deformylase
1179	 65.12	0	1309108..1310400	+	430	119962515	glyA	AAur_1227	-	serine hydroxymethyltransferase
1180	 65.77	+1	1310550..1311443	+	297	119960888	-	AAur_1228	-	putative tetrahydrofolate dehydrogenase/cyclohydrolase
1181	 63.68	0	1311562..1312599	+	345	119963373	-	AAur_1229	-	putative ABC transporter, ATP-binding protein
1182	 62.16	0	1312649..1313446	+	265	119964037	-	AAur_1230	-	putative ABC-2 type transporter
1183	 61.51	0	1313443..1314276	+	277	119960898	-	AAur_1231	-	putative ABC-type multidrug transport system, permease component
1184	 63.05	0	1314303..1315628	-	441	119963669	-	AAur_1232	-	major facilitator transporter
1185	 66.02	+1	1315669..1316748	-	359	119961832	-	AAur_1233	-	hypothetical protein
1186	 64.16	0	1316915..1317952	+	345	119960788	-	AAur_1234	-	LacI family transcriptional regulator
1187	 62.08	0	1318033..1318599	+	188	119961941	-	AAur_1235	-	hypothetical protein
1188	 60.79	0	1318610..1319443	+	277	119962536	xth	AAur_1236	-	exodeoxyribonuclease III
1189	 62.04	0	1319464..1320588	+	374	119963213	trpS	AAur_1237	-	tryptophanyl-tRNA synthetase
1190	 60.14	0	1320704..1321270	+	188	119961268	-	AAur_1238	-	putative 2',5' RNA ligase family protein
1191	 61.06	0	1321356..1322282	+	308	119962009	-	AAur_1239	-	ribonuclease BN-like family protein
1192	 65.23	+1	1322477..1324699	-	740	119961924	-	AAur_1240	-	hypothetical protein
62.44	MEAN

2.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.