IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
867	 43.43	0	877994..878617	-	207	15606472	-	aq_1244	-	hypothetical protein
868	 48.00	+1	878614..879615	-	333	15606473	ilvC	aq_1245	-	ketol-acid reductoisomerase
869	 40.21	0	879682..880335	+	217	15606474	-	aq_1247	-	hypothetical protein
870	 43.82	0	880332..881027	+	231	15606475	-	aq_1248	-	hypothetical protein
871	 37.05	-1	880975..881754	+	259	15606476	cds	aq_1249	-	phosphatidate cytidylyltransferase
872	 46.32	0	881726..882241	+	171	15606477	-	aq_1250	-	hypothetical protein
873	 44.74	0	882667..883122	-	151	15606478	-	aq_1253	-	hypothetical protein
874	 40.78	0	883164..883472	+	102	15606479	-	aq_1254	-	hypothetical protein
875	 42.32	0	883469..885538	-	689	15606480	feoB	aq_1255	-	ferrous iron transport protein B
876	 38.82	-1	885548..886477	-	309	15606481	-	aq_1256	-	hypothetical protein
877	 46.05	0	886771..888264	+	497	15606482	metG	aq_1257	-	methionyl-tRNA synthetase alpha subunit
878	 38.75	-1	888261..889127	+	288	15606483	-	aq_1258	-	hypothetical protein
879	 42.72	0	889204..890514	+	436	15606484	-	aq_1259	-	hypothetical protein
880	 44.07	0	890580..892274	+	564	15606485	-	aq_1262	-	hypothetical protein
881	 43.24	0	892238..892792	+	184	15606486	-	aq_1263	-	hypothetical protein
882	 32.03	-2	892789..893709	+	306	15606487	-	aq_1264	-	hypothetical protein
883	 47.36	+1	893687..895354	-	555	15606488	cstA	aq_1265	-	carbon starvation protein A
884	 41.49	0	895686..896408	+	240	15606489	-	aq_1267	-	hypothetical protein
885	 45.76	0	896480..898297	+	605	15606490	hvsT	aq_1268	-	high affinity sulfate transporter
886	 41.46	0	898446..899048	+	200	15606491	-	aq_1270	-	hypothetical protein
887	 44.32	0	899259..900560	+	433	15606492	mpp	aq_1271	-	processing protease
888	 42.42	0	900570..900899	-	109	15606493	-	aq_1272	-	hypothetical protein
889	 44.19	0	900887..901807	-	306	15606494	-	aq_1273	-	hypothetical protein
890	 42.70	0	901756..903132	-	458	15606495	cafA	aq_1275	-	cytoplasmic axial filament protein
891	 43.46	0	903044..903961	+	305	15606496	-	aq_1276	-	hypothetical protein
892	 40.84	0	903946..904518	-	190	15606497	-	aq_1277	-	hypothetical protein
893	 43.33	0	904557..905777	+	406	15606498	hemA	aq_1279	-	glutamyl tRNA reductase (delta-aminolevulinate synthase)
894	 46.09	0	906163..907440	+	425	15606499	murA	aq_1281	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
895	 41.84	0	907490..907924	-	144	15606500	hspC	aq_1283	-	small heat shock protein (class I)
896	 45.49	0	907985..909169	-	394	15606501	pilC2	aq_1285	-	fimbrial assembly protein PilC2
897	 43.74	0	909166..910011	-	281	15606502	-	aq_1286	-	hypothetical protein
898	 39.09	-1	910008..910667	-	219	15606503	-	aq_1287	-	hypothetical protein
899	 44.89	0	910633..912510	-	625	15606504	gspD	aq_1288	-	general secretion pathway protein D
900	 46.65	0	912896..914194	-	432	15606505	purA	aq_1290	-	adenylosuccinate synthetase
901	 42.27	0	914223..914759	-	178	15606506	-	aq_1292	-	putative NTPase
902	 47.12	0	914828..917431	+	867	15606507	alaS	aq_1293	-	alanyl-tRNA synthetase
903	 46.28	0	917436..917906	+	156	15606508	-	aq_1295	-	hypothetical protein
904	 47.64	+1	918003..920435	+	810	15606509	clpC	aq_1296	-	ATP-dependent Clp protease
905	 41.93	0	920473..922809	+	778	15606510	omp	aq_1300	-	outer membrane protein
906	 44.13	0	922835..923047	-	70	15606511	cspC	aq_1303a	-	cold shock protein
907	 41.42	0	923151..923867	-	238	15606512	hisA	aq_1303	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
908	 47.88	+1	923864..924619	-	251	15606513	pyrDB	aq_1305	-	dihydroorotate dehydrogenase electron transfer subunit
909	 47.44	+1	924687..925997	+	436	15606514	sucC1	aq_1306	-	succinyl-CoA ligase beta subunit
910	 43.54	0	926031..927167	+	378	15606515	tgt	aq_1308	-	queuine tRNA-ribosyltransferase
911	 43.62	0	927151..928044	-	297	15606516	thrB	aq_1309	-	homoserine kinase
912	 45.10	0	928429..928785	+	118	15606517	nuoA2	aq_1310	-	NADH dehydrogenase I chain A
913	 48.52	+1	928798..929337	+	179	15606518	nuoB	aq_1312	-	NADH dehydrogenase I chain B
914	 48.32	+1	929347..931107	+	586	15606519	nuoD2	aq_1314	-	NADH dehydrogenase I chain D
915	 47.28	+1	931120..932130	+	336	15606520	nuoH1	aq_1315	-	NADH dehydrogenase I chain H
916	 46.04	0	932142..932747	+	201	15606521	nuoI1	aq_1317	-	NADH dehydrogenase I chain I
917	 47.24	+1	932735..933223	+	162	15606522	nuoJ1	aq_1318	-	NADH dehydrogenase I chain J
918	 43.23	0	933233..933535	+	100	15606523	nuoK1	aq_1319	-	NADH dehydrogenase I chain K
919	 46.60	0	933532..935400	+	622	15606524	nuoL1	aq_1320	-	NADH dehydrogenase I chain L
920	 45.26	0	935400..936875	+	491	15606525	nuoM1	aq_1321	-	NADH dehydrogenase I chain M
921	 45.45	0	936880..938274	+	464	15606526	nuoN1	aq_1322	-	NADH dehydrogenase I chain N
922	 45.79	0	938284..938925	+	213	15606527	-	aq_1323	-	hypothetical protein
923	 48.19	+1	938922..939500	-	192	15606528	-	aq_1324	-	hypothetical protein
924	 42.66	0	939497..939925	-	142	15606529	mobB	aq_1326	-	molybdopterin-guainine dinucleotide biosynthesis protein B
925	 45.61	0	939955..940638	+	227	15606530	-	aq_1327	-	hypothetical protein
926	 43.88	0	940635..942929	-	764	15606531	-	aq_1328	-	hypothetical protein
927	 47.43	+1	942990..943805	+	271	15606532	moeB	aq_1329	-	molybdopterin biosynthesis protein MoeB
928	 45.11	0	943806..945002	+	398	15606533	gltP	aq_1330	-	proton/sodium-glutamate symport protein
929	 39.83	0	945014..946060	+	348	15606534	czcB2	aq_1331	-	cation efflux system (czcB-like)
930	 42.07	0	946057..947304	+	415	15606535	-	aq_1332	-	hypothetical protein
931	 45.47	0	947293..948198	-	301	15606536	-	aq_1333	-	hypothetical protein
932	 45.93	0	948474..950069	-	531	15606537	pyrG	aq_1334	-	CTP synthetase
933	 42.65	0	950129..951094	+	321	15606538	nse	aq_1335	-	nucleotide sugar epimerase
934	 43.82	0	951091..952215	-	374	15606539	-	aq_1336	-	hypothetical protein
935	 45.76	0	952212..953450	-	412	15606540	clpX	aq_1337	-	ATP-dependent protease ATP-binding subunit
936	 47.69	+1	953470..954075	-	201	15606541	clpP	aq_1339	-	ATP-dependent Clp protease proteolytic subunit
937	 45.51	0	954053..955489	-	478	15606542	tig	aq_1340	-	trigger factor
938	 44.70	0	955513..956154	-	213	15606543	gph	aq_1342	-	phosphoglycolate phosphatase
939	 42.65	0	956151..956633	-	160	15606544	-	aq_1343	-	hypothetical protein
940	 46.67	0	957037..957741	+	234	15606545	-	aq_1345	-	hypothetical protein
941	 44.82	0	957743..958273	+	176	15606546	-	aq_1347	-	hypothetical protein
942	 45.96	0	958188..958757	+	189	15606547	-	aq_1348	-	hypothetical protein
943	 41.39	0	958754..959560	+	268	15606548	-	aq_1349	-	hypothetical protein
944	 42.51	0	959557..961038	+	493	15606549	-	aq_1350	-	spermidine synthase
945	 44.22	0	961064..962110	+	348	15606550	phoH	aq_1351	-	phosphate starvation-inducible protein
946	 44.37	0	962034..962486	+	150	15606551	-	aq_1354	-	hypothetical protein
947	 44.65	0	962453..963283	-	276	15606552	lipA	aq_1355	-	lipoyl synthase
948	 40.23	0	963309..963743	+	144	15606553	-	aq_1356	-	hypothetical protein
949	 45.84	0	963860..965266	+	468	15606554	cydA	aq_1357	-	cytochrome oxidase d subunit I
950	 45.05	0	965268..966368	+	366	15606555	cydB	aq_1358	-	cytochrome oxidase d subunit II
951	 44.14	0	966349..966894	-	181	15606556	-	aq_1359	-	acetyltransferase
952	 44.98	0	966852..968216	-	454	15606557	murC	aq_1360	-	UDP-N-acetylmuramate-alanine ligase
953	 45.74	0	968216..969247	-	343	15606558	adh1	aq_1362	-	alcohol dehydrogenase
954	 44.95	0	969261..969725	-	154	15606559	accB	aq_1363	-	biotin carboxyl carrier protein
955	 44.21	0	969722..970300	-	192	15606560	efp	aq_1364	-	elongation factor P
956	 40.07	0	970488..971987	+	499	15606561	-	aq_1365	-	hypothetical protein
957	 40.11	0	972096..972656	-	186	15606562	thiE1	aq_1366	-	thiamine phosphate synthase
958	 41.80	0	972668..973954	-	428	15606563	spsI	aq_1367	-	glucose-1-phosphate thymidylyltransferase
959	 39.84	0	973969..974475	-	168	15606564	tagD2	aq_1368	-	glycerol-3-phosphate cytidyltransferase
960	 40.23	0	974450..975232	+	260	15606565	-	aq_1369	-	hypothetical protein
961	 38.76	-1	975229..975744	+	171	15606566	rlpA1	aq_1370	-	rare lipoprotein A
962	 46.00	0	975755..977128	+	457	15606567	argH	aq_1372	-	argininosuccinate lyase
963	 47.69	+1	977204..977983	+	259	15606568	nuoH2	aq_1373	-	NADH dehydrogenase I chain H
964	 41.91	0	977950..978252	+	100	15606569	nuoH3	aq_1374	-	NADH dehydrogenase I chain H
965	 46.41	0	978259..978885	+	208	15606570	nuoI2	aq_1375	-	NADH dehydrogenase I chain I
966	 44.32	0	978882..979418	+	178	15606571	nuoJ2	aq_1377	-	NADH dehydrogenase I chain J
43.45	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.