IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
796	 41.36	0	801764..802810	-	348	15606401	pabB	aq_1144	-	p-aminobenzoate synthetase
797	 47.59	+1	802807..803970	-	387	15606402	dhaT	aq_1145	-	1,3 propanediol dehydrogenase
798	 46.65	0	803996..805384	-	462	15606403	-	aq_1148	-	hypothetical protein
799	 41.35	0	805785..808229	-	814	15606404	-	aq_1151	-	hypothetical protein
800	 47.92	+1	808278..809525	-	415	15606405	lysC	aq_1152	-	aspartokinase
801	 48.63	+1	809561..810691	+	376	15606406	metK	aq_1154	-	S-adenosylmethionine synthetase
802	 42.53	0	810680..811831	-	383	15606407	hisS2	aq_1155	-	histidyl-tRNA synthetase
803	 46.12	0	811828..813516	-	562	15606408	hoxX	aq_1156	-	hydrogenase regulation HoxX
804	 46.98	0	813529..814671	-	380	15606409	hypD	aq_1157	-	hydrogenase expression/formation protein HypD
805	 44.74	0	814948..818481	+	1177	15606410	topG1	aq_1159	-	reverse gyrase
806	 43.12	0	818518..818895	+	125	15606411	-	aq_1163	-	hypothetical protein
807	 47.48	+1	819009..819743	+	244	15606412	-	aq_1166	-	hypothetical protein
808	 48.03	+1	819763..820932	+	389	15606413	forA2	aq_1167	-	ferredoxin oxidoreductase alpha subunit
809	 47.01	0	820956..821825	+	289	15606414	forB2	aq_1168	-	ferredoxin oxidoreductase beta subunit
810	 45.89	0	821822..822514	+	230	15606415	forG2	aq_1169	-	ferredoxin oxidoreductase gamma subunit
811	 44.30	0	822528..822764	+	78	15606416	fdx2	aq_1171a	-	ferredoxin
812	 43.80	0	823159..824772	+	537	15606417	carB1	aq_1172	-	carbamoyl-phosphate synthase large subunit
813	 42.22	0	824888..825337	+	149	15606418	-	aq_1173	-	hypothetical protein
814	 43.61	0	825286..825966	+	226	15606419	rlpA2	aq_1174	-	rare lipoprotein A
815	 44.92	0	825994..827391	+	465	15606420	purF	aq_1175	-	amidophosphoribosyltransferase
816	 42.26	0	827458..827793	+	111	15606421	-	aq_1176	-	hypothetical protein
817	 37.39	-1	827782..828816	-	344	15606422	murG	aq_1177	-	phospho-N-acetylmuramoyl-pentapeptide-transferase -
818	 47.82	+1	828841..829344	+	167	15606423	purE	aq_1178	-	phosphoribosylaminoimidazole carboxylase
819	 46.62	0	829334..830590	+	418	15606424	sahH	aq_1180	-	S-adenosyl-L-homocysteine hydrolase
820	 45.99	0	830595..832064	-	489	15606425	fliF	aq_1182	-	flagellar M-ring protein
821	 39.36	-1	832066..832347	-	93	15606426	fliE	aq_1182a	-	flagellar hook-basal body protein
822	 43.46	0	832338..832742	-	134	15606427	flgC	aq_1183	-	flagellar biosynthesis FlgC
823	 38.93	-1	832739..833113	-	124	15606428	flgB	aq_1184	-	flagellar basal body rod protein FlgB
824	 40.21	0	833114..834901	-	595	15606429	-	aq_1185	-	hypothetical protein
825	 33.01	-2	834837..836057	-	406	15606430	-	aq_1186	-	hypothetical protein
826	 38.89	-1	836072..836575	-	167	15606431	-	aq_1187	-	hypothetical protein
827	 32.48	-2	836624..837091	+	155	15606432	-	aq_1188	-	hypothetical protein
828	 43.90	0	837078..838865	+	595	15606433	pbpA1	aq_1189	-	penicillin binding protein 2
829	 39.74	-1	838862..839845	-	327	15606434	-	aq_1191	-	hypothetical protein
830	 42.92	0	839920..840159	+	79	15606435	fdx3	aq_1192a	-	ferredoxin
831	 48.07	+1	840172..840741	+	189	15606436	-	aq_1192	-	hypothetical protein
832	 38.67	-1	840741..841283	+	180	15606437	-	aq_1194	-	hypothetical protein
833	 48.64	+1	841295..842509	+	404	15606438	forA1	aq_1195	-	ferredoxin oxidoreductase alpha subunit
834	 46.23	0	842499..843359	+	286	15606439	forB1	aq_1196	-	ferredoxin oxidoreductase beta subunit
835	 46.28	0	843356..844081	+	241	15606440	forG1	aq_1200	-	ferredoxin oxidoreductase gamma subunit
836	 38.35	-1	844484..844822	-	112	15606441	-	aq_1201	-	hypothetical protein
837	 44.82	0	844743..846536	+	597	15606442	lysU	aq_1202	-	lysyl-tRNA synthetase
838	 48.25	+1	846533..847906	-	457	15606443	thiC	aq_1204	-	thiamine biosynthesis protein ThiC
839	 48.46	+1	847969..848940	+	323	15606444	accA	aq_1206	-	acetyl-CoA carboxylase alpha subunit
840	 42.53	0	848924..849358	-	144	15606445	furR1	aq_1207	-	FUR family transcriptional regulator
841	 47.11	0	849405..850667	-	420	15606446	lysA	aq_1208	-	diaminopimelate decarboxylase
842	 42.72	0	850689..851423	-	244	15606447	-	aq_1210	-	hypothetical protein
843	 43.30	0	851461..852072	+	203	15606448	-	aq_1211	-	hypothetical protein
844	 46.64	0	852069..854105	+	678	15606449	flhA	aq_1212	-	flagellar export protein
845	 41.44	0	854095..855216	+	373	15606450	flhF	aq_1214	-	flagellar biosynthesis FlhF
846	 45.52	0	855179..856015	+	278	15606451	minD1	aq_1217	-	septum site-determining protein MinD
847	 41.21	0	856012..856722	+	236	15606452	fliA	aq_1218	-	RNA polymerase sigma factor FliA
848	 43.91	0	856709..857266	-	185	15606453	-	aq_1219	-	hypothetical protein
849	 43.67	0	857305..858804	-	499	15606454	-	aq_1220	-	hypothetical protein
850	 46.91	0	859084..860505	+	473	15606455	gltX	aq_1221	-	glutamyl-tRNA synthetase
851	 38.84	-1	860502..861191	+	229	15606456	abcT1	aq_1222	-	ABC transporter
852	 37.29	-1	861188..861895	-	235	15606457	-	aq_1223	-	hypothetical protein
853	 46.31	0	862048..863118	+	356	15606458	-	aq_1224	-	hypothetical protein
854	 47.22	+1	863160..864362	+	400	15606459	-	aq_1226	-	S-adenosylmethionine synthetase
855	 46.65	0	864401..865579	+	392	15606460	mffT2	aq_1229	-	major facilitator transporter
856	 43.15	0	865609..866352	-	247	15606461	-	aq_1230	-	hypothetical protein
857	 44.87	0	866714..867727	-	337	15606462	dmsC	aq_1231	-	DMSO reductase chain C
858	 50.20	+1	867743..868507	-	254	15606463	dmsB1	aq_1232	-	DMSO reductase chain B
859	 47.24	+1	868520..871474	-	984	15606464	dmsA	aq_1234	-	DMSO reductase chain A
860	 38.95	-1	871498..872904	+	468	15606465	-	aq_1236	-	hypothetical protein
861	 37.59	-1	873066..873629	+	187	15606466	cysG	aq_1237	-	siroheme synthase
862	 41.17	0	873615..874163	-	182	15606467	-	aq_1238	-	hypothetical protein
863	 43.15	0	874193..874528	-	111	15606468	-	aq_1239	-	hypothetical protein
864	 45.18	0	874528..875253	-	241	15606469	adh2	aq_1240	-	alcohol dehydrogenase
865	 41.06	0	875250..875702	-	150	15606470	-	aq_1241	-	hypothetical protein
866	 43.64	0	875699..877987	-	762	15606471	mutS2	aq_1242	-	DNA mismatch repair protein MutS
867	 43.43	0	877994..878617	-	207	15606472	-	aq_1244	-	hypothetical protein
868	 48.00	+1	878614..879615	-	333	15606473	ilvC	aq_1245	-	ketol-acid reductoisomerase
869	 40.21	0	879682..880335	+	217	15606474	-	aq_1247	-	hypothetical protein
870	 43.82	0	880332..881027	+	231	15606475	-	aq_1248	-	hypothetical protein
871	 37.05	-1	880975..881754	+	259	15606476	cds	aq_1249	-	phosphatidate cytidylyltransferase
872	 46.32	0	881726..882241	+	171	15606477	-	aq_1250	-	hypothetical protein
873	 44.74	0	882667..883122	-	151	15606478	-	aq_1253	-	hypothetical protein
874	 40.78	0	883164..883472	+	102	15606479	-	aq_1254	-	hypothetical protein
875	 42.32	0	883469..885538	-	689	15606480	feoB	aq_1255	-	ferrous iron transport protein B
876	 38.82	-1	885548..886477	-	309	15606481	-	aq_1256	-	hypothetical protein
877	 46.05	0	886771..888264	+	497	15606482	metG	aq_1257	-	methionyl-tRNA synthetase alpha subunit
878	 38.75	-1	888261..889127	+	288	15606483	-	aq_1258	-	hypothetical protein
879	 42.72	0	889204..890514	+	436	15606484	-	aq_1259	-	hypothetical protein
880	 44.07	0	890580..892274	+	564	15606485	-	aq_1262	-	hypothetical protein
881	 43.24	0	892238..892792	+	184	15606486	-	aq_1263	-	hypothetical protein
882	 32.03	-2	892789..893709	+	306	15606487	-	aq_1264	-	hypothetical protein
883	 47.36	+1	893687..895354	-	555	15606488	cstA	aq_1265	-	carbon starvation protein A
884	 41.49	0	895686..896408	+	240	15606489	-	aq_1267	-	hypothetical protein
885	 45.76	0	896480..898297	+	605	15606490	hvsT	aq_1268	-	high affinity sulfate transporter
886	 41.46	0	898446..899048	+	200	15606491	-	aq_1270	-	hypothetical protein
887	 44.32	0	899259..900560	+	433	15606492	mpp	aq_1271	-	processing protease
888	 42.42	0	900570..900899	-	109	15606493	-	aq_1272	-	hypothetical protein
889	 44.19	0	900887..901807	-	306	15606494	-	aq_1273	-	hypothetical protein
890	 42.70	0	901756..903132	-	458	15606495	cafA	aq_1275	-	cytoplasmic axial filament protein
891	 43.46	0	903044..903961	+	305	15606496	-	aq_1276	-	hypothetical protein
892	 40.84	0	903946..904518	-	190	15606497	-	aq_1277	-	hypothetical protein
893	 43.33	0	904557..905777	+	406	15606498	hemA	aq_1279	-	glutamyl tRNA reductase (delta-aminolevulinate synthase)
894	 46.09	0	906163..907440	+	425	15606499	murA	aq_1281	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
895	 41.84	0	907490..907924	-	144	15606500	hspC	aq_1283	-	small heat shock protein (class I)
43.45	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.