IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
769	 44.38	0	772733..773836	+	367	15606375	-	aq_1106	-	hypothetical protein
770	 42.62	0	773849..774085	+	78	15607139	moaD	aq_1106a	-	molybdopterin converting factor, small subunit
771	 46.32	0	774106..774621	+	171	15606376	gcsH4	aq_1108	-	glycine cleavage system protein H
772	 44.55	0	774618..775937	+	439	15606377	gcsP2	aq_1109	-	glycine dehydrogenase subunit 1
773	 43.86	0	775923..776378	-	151	15606378	-	aq_1110	-	hypothetical protein
774	 43.99	0	776595..777260	+	221	15606379	-	aq_1111	-	hypothetical protein
775	 41.04	0	777271..778230	+	319	15606380	-	aq_1113	-	hypothetical protein
776	 41.73	0	778227..780167	+	646	15606381	hksP1	aq_1115	-	histidine kinase sensor protein
777	 41.74	0	780148..781467	+	439	15606382	ntrC1	aq_1117	-	NtrC family transcriptional regulator
778	 43.01	0	781521..782078	+	185	15606383	-	aq_1119	-	hypothetical protein
779	 48.41	+1	782351..782854	+	167	15606384	-	aq_1120	-	hypothetical protein
780	 42.13	0	782895..783701	+	268	15606385	-	aq_1121	-	hypothetical protein
781	 45.58	0	783682..786834	-	1050	15606386	acrD2	aq_1122	-	AcrB/AcrD/AcrF family cation efflux protein
782	 45.06	0	786841..788835	-	664	15606387	ctrA3	aq_1125	-	cation transporter E1-E2 family ATPase
783	 43.09	0	788837..789205	-	122	15606388	-	aq_1127	-	hypothetical protein
784	 44.17	0	789211..789579	-	122	15606389	-	aq_1129	-	hypothetical protein
785	 46.97	0	789593..791176	-	527	15606390	sufI	aq_1130	-	periplasmic cell division protein (SufI)
786	 44.79	0	791189..792523	-	444	15606391	czcB1	aq_1132	-	cation efflux system (czcB-like)
787	 35.62	-2	792520..793698	-	392	15606392	-	aq_1133	-	hypothetical protein
788	 44.82	0	793767..794837	-	356	15606393	proB	aq_1134	-	gamma-glutamyl kinase
789	 44.90	0	794867..795739	+	290	15606394	-	aq_1137	-	hypothetical protein
790	 45.81	0	795750..796214	+	154	15606395	rpiB	aq_1138	-	ribose 5-phosphate isomerase B
791	 41.72	0	796183..797529	+	448	15606396	ftsW	aq_1139	-	cell division protein FtsW
792	 48.67	+1	797533..798738	+	401	15606397	argG	aq_1140	-	argininosuccinate synthase
793	 42.95	0	798771..799841	+	356	15606398	-	aq_1141	-	hypothetical protein
794	 42.67	0	799806..800855	-	349	15606399	-	aq_1142	-	hypothetical protein
795	 47.57	+1	800897..801781	+	294	15606400	dapA	aq_1143	-	dihydrodipicolinate synthase
796	 41.36	0	801764..802810	-	348	15606401	pabB	aq_1144	-	p-aminobenzoate synthetase
797	 47.59	+1	802807..803970	-	387	15606402	dhaT	aq_1145	-	1,3 propanediol dehydrogenase
798	 46.65	0	803996..805384	-	462	15606403	-	aq_1148	-	hypothetical protein
799	 41.35	0	805785..808229	-	814	15606404	-	aq_1151	-	hypothetical protein
800	 47.92	+1	808278..809525	-	415	15606405	lysC	aq_1152	-	aspartokinase
801	 48.63	+1	809561..810691	+	376	15606406	metK	aq_1154	-	S-adenosylmethionine synthetase
802	 42.53	0	810680..811831	-	383	15606407	hisS2	aq_1155	-	histidyl-tRNA synthetase
803	 46.12	0	811828..813516	-	562	15606408	hoxX	aq_1156	-	hydrogenase regulation HoxX
804	 46.98	0	813529..814671	-	380	15606409	hypD	aq_1157	-	hydrogenase expression/formation protein HypD
805	 44.74	0	814948..818481	+	1177	15606410	topG1	aq_1159	-	reverse gyrase
806	 43.12	0	818518..818895	+	125	15606411	-	aq_1163	-	hypothetical protein
807	 47.48	+1	819009..819743	+	244	15606412	-	aq_1166	-	hypothetical protein
808	 48.03	+1	819763..820932	+	389	15606413	forA2	aq_1167	-	ferredoxin oxidoreductase alpha subunit
809	 47.01	0	820956..821825	+	289	15606414	forB2	aq_1168	-	ferredoxin oxidoreductase beta subunit
810	 45.89	0	821822..822514	+	230	15606415	forG2	aq_1169	-	ferredoxin oxidoreductase gamma subunit
811	 44.30	0	822528..822764	+	78	15606416	fdx2	aq_1171a	-	ferredoxin
812	 43.80	0	823159..824772	+	537	15606417	carB1	aq_1172	-	carbamoyl-phosphate synthase large subunit
813	 42.22	0	824888..825337	+	149	15606418	-	aq_1173	-	hypothetical protein
814	 43.61	0	825286..825966	+	226	15606419	rlpA2	aq_1174	-	rare lipoprotein A
815	 44.92	0	825994..827391	+	465	15606420	purF	aq_1175	-	amidophosphoribosyltransferase
816	 42.26	0	827458..827793	+	111	15606421	-	aq_1176	-	hypothetical protein
817	 37.39	-1	827782..828816	-	344	15606422	murG	aq_1177	-	phospho-N-acetylmuramoyl-pentapeptide-transferase -
818	 47.82	+1	828841..829344	+	167	15606423	purE	aq_1178	-	phosphoribosylaminoimidazole carboxylase
819	 46.62	0	829334..830590	+	418	15606424	sahH	aq_1180	-	S-adenosyl-L-homocysteine hydrolase
820	 45.99	0	830595..832064	-	489	15606425	fliF	aq_1182	-	flagellar M-ring protein
821	 39.36	-1	832066..832347	-	93	15606426	fliE	aq_1182a	-	flagellar hook-basal body protein
822	 43.46	0	832338..832742	-	134	15606427	flgC	aq_1183	-	flagellar biosynthesis FlgC
823	 38.93	-1	832739..833113	-	124	15606428	flgB	aq_1184	-	flagellar basal body rod protein FlgB
824	 40.21	0	833114..834901	-	595	15606429	-	aq_1185	-	hypothetical protein
825	 33.01	-2	834837..836057	-	406	15606430	-	aq_1186	-	hypothetical protein
826	 38.89	-1	836072..836575	-	167	15606431	-	aq_1187	-	hypothetical protein
827	 32.48	-2	836624..837091	+	155	15606432	-	aq_1188	-	hypothetical protein
828	 43.90	0	837078..838865	+	595	15606433	pbpA1	aq_1189	-	penicillin binding protein 2
829	 39.74	-1	838862..839845	-	327	15606434	-	aq_1191	-	hypothetical protein
830	 42.92	0	839920..840159	+	79	15606435	fdx3	aq_1192a	-	ferredoxin
831	 48.07	+1	840172..840741	+	189	15606436	-	aq_1192	-	hypothetical protein
832	 38.67	-1	840741..841283	+	180	15606437	-	aq_1194	-	hypothetical protein
833	 48.64	+1	841295..842509	+	404	15606438	forA1	aq_1195	-	ferredoxin oxidoreductase alpha subunit
834	 46.23	0	842499..843359	+	286	15606439	forB1	aq_1196	-	ferredoxin oxidoreductase beta subunit
835	 46.28	0	843356..844081	+	241	15606440	forG1	aq_1200	-	ferredoxin oxidoreductase gamma subunit
836	 38.35	-1	844484..844822	-	112	15606441	-	aq_1201	-	hypothetical protein
837	 44.82	0	844743..846536	+	597	15606442	lysU	aq_1202	-	lysyl-tRNA synthetase
838	 48.25	+1	846533..847906	-	457	15606443	thiC	aq_1204	-	thiamine biosynthesis protein ThiC
839	 48.46	+1	847969..848940	+	323	15606444	accA	aq_1206	-	acetyl-CoA carboxylase alpha subunit
840	 42.53	0	848924..849358	-	144	15606445	furR1	aq_1207	-	FUR family transcriptional regulator
841	 47.11	0	849405..850667	-	420	15606446	lysA	aq_1208	-	diaminopimelate decarboxylase
842	 42.72	0	850689..851423	-	244	15606447	-	aq_1210	-	hypothetical protein
843	 43.30	0	851461..852072	+	203	15606448	-	aq_1211	-	hypothetical protein
844	 46.64	0	852069..854105	+	678	15606449	flhA	aq_1212	-	flagellar export protein
845	 41.44	0	854095..855216	+	373	15606450	flhF	aq_1214	-	flagellar biosynthesis FlhF
846	 45.52	0	855179..856015	+	278	15606451	minD1	aq_1217	-	septum site-determining protein MinD
847	 41.21	0	856012..856722	+	236	15606452	fliA	aq_1218	-	RNA polymerase sigma factor FliA
848	 43.91	0	856709..857266	-	185	15606453	-	aq_1219	-	hypothetical protein
849	 43.67	0	857305..858804	-	499	15606454	-	aq_1220	-	hypothetical protein
850	 46.91	0	859084..860505	+	473	15606455	gltX	aq_1221	-	glutamyl-tRNA synthetase
851	 38.84	-1	860502..861191	+	229	15606456	abcT1	aq_1222	-	ABC transporter
852	 37.29	-1	861188..861895	-	235	15606457	-	aq_1223	-	hypothetical protein
853	 46.31	0	862048..863118	+	356	15606458	-	aq_1224	-	hypothetical protein
854	 47.22	+1	863160..864362	+	400	15606459	-	aq_1226	-	S-adenosylmethionine synthetase
855	 46.65	0	864401..865579	+	392	15606460	mffT2	aq_1229	-	major facilitator transporter
856	 43.15	0	865609..866352	-	247	15606461	-	aq_1230	-	hypothetical protein
857	 44.87	0	866714..867727	-	337	15606462	dmsC	aq_1231	-	DMSO reductase chain C
858	 50.20	+1	867743..868507	-	254	15606463	dmsB1	aq_1232	-	DMSO reductase chain B
859	 47.24	+1	868520..871474	-	984	15606464	dmsA	aq_1234	-	DMSO reductase chain A
860	 38.95	-1	871498..872904	+	468	15606465	-	aq_1236	-	hypothetical protein
861	 37.59	-1	873066..873629	+	187	15606466	cysG	aq_1237	-	siroheme synthase
862	 41.17	0	873615..874163	-	182	15606467	-	aq_1238	-	hypothetical protein
863	 43.15	0	874193..874528	-	111	15606468	-	aq_1239	-	hypothetical protein
864	 45.18	0	874528..875253	-	241	15606469	adh2	aq_1240	-	alcohol dehydrogenase
865	 41.06	0	875250..875702	-	150	15606470	-	aq_1241	-	hypothetical protein
866	 43.64	0	875699..877987	-	762	15606471	mutS2	aq_1242	-	DNA mismatch repair protein MutS
867	 43.43	0	877994..878617	-	207	15606472	-	aq_1244	-	hypothetical protein
868	 48.00	+1	878614..879615	-	333	15606473	ilvC	aq_1245	-	ketol-acid reductoisomerase
43.45	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.