IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
711	 43.68	0	707454..707801	+	115	15606317	hypA	aq_1021	-	hydrogenase accessory protein HypA
712	 41.84	0	707801..708835	+	344	15606318	-	aq_1022	-	hypothetical protein
713	 46.10	0	708832..709959	-	375	15606319	acuC1	aq_1023	-	acetoin utilization protein
714	 45.63	0	709946..710791	-	281	15606320	-	aq_1024	-	hypothetical protein
715	 46.91	0	710781..713159	-	792	15606321	gyrB	aq_1026	-	gyrase B
716	 47.22	+1	713175..713570	-	131	15606322	-	aq_1029	-	hypothetical protein
717	 34.72	-2	713839..714774	-	311	15606323	selD	aq_1030	-	selenophosphate synthase
718	 33.41	-2	714928..716286	-	452	15606324	selA	aq_1031	-	selenocysteine synthase
719	 33.10	-2	716314..718062	+	582	15606325	selB	aq_1033	-	elongation factor SelB
720	 51.79	+2	718059..718616	-	185	15606326	-	aq_1035	-	hypothetical protein
721	 41.87	0	718766..719140	-	124	15606327	-	aq_1036	-	hypothetical protein
722	 39.19	-1	719238..719681	-	147	15606328	-	aq_1037	-	hypothetical protein
723	 30.40	-2	719732..720652	+	306	15606329	lysR2	aq_1038	-	LysR family transcriptional regulator
724	 47.44	+1	720865..723912	+	1015	15606330	fdoG	aq_1039	-	formate dehydrogenase alpha subunit
725	 48.36	+1	723927..724838	+	303	15606331	fdoH	aq_1046	-	formate dehydrogenase beta subunit
726	 51.10	+2	724841..725476	+	211	15606332	fdoI	aq_1049	-	formate dehydrogenase gamma subunit
727	 48.24	+1	725496..726005	+	169	15606333	sodC1	aq_1050	-	superoxide dismutase (Cu/Zn)
728	 31.10	-2	725987..726838	+	283	15606334	fdhE	aq_1051	-	formate dehydrogenase formation protein FdhE
729	 36.11	-1	726937..727368	+	143	15606335	gcsH1	aq_1052	-	glycine cleavage system protein H
730	 31.72	-2	727480..728592	+	370	15606336	nifS1	aq_1053	-	FeS cluster formation protein NifS
731	 45.42	0	728999..729784	+	261	15606337	-	aq_1054	-	hypothetical protein
732	 46.12	0	729781..730554	-	257	15606338	pstB	aq_1055	-	phosphate transport ATP binding protein
733	 46.06	0	730704..731984	+	426	15606339	-	aq_1056	-	nicotinate phosphoribosyltransferase
734	 43.31	0	731970..732470	-	166	15606340	-	aq_1057	-	hypothetical protein
735	 37.78	-1	732523..733062	+	179	15606341	acrR1	aq_1058	-	TetR/AcrR family transcriptional regulator
736	 39.71	-1	733053..734306	+	417	15606342	-	aq_1059	-	hypothetical protein
737	 42.04	0	734303..735427	+	374	15606343	-	aq_1060	-	hypothetical protein
738	 44.66	0	735424..736959	+	511	15606344	emrB	aq_1062	-	major facilitator family transporter
739	 48.01	+1	736956..737984	-	342	15606345	gap	aq_1065	-	glyceraldehyde-3-phosphate dehydrogenase
740	 39.98	0	738025..738942	+	305	15606346	miaA	aq_1067	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
741	 46.44	0	739746..741233	-	495	15606347	cysS	aq_1068	-	cysteinyl-tRNA synthetase
742	 46.75	0	741238..742221	-	327	15606348	galE	aq_1069	-	UDP-glucose-4-epimerase
743	 36.85	-1	742238..742948	+	236	15606349	-	aq_1070	-	hypothetical protein
744	 45.57	0	742979..744310	+	443	15606350	proA	aq_1071	-	gamma-glutamyl phosphate reductase
745	 39.54	-1	744320..744754	+	144	15606351	-	aq_1072	-	hypothetical protein
746	 46.49	0	744788..745714	+	308	15606352	czcD	aq_1073	-	cation efflux system (czcD-like)
747	 44.18	0	745729..746226	+	165	15606353	-	aq_1075	-	hypothetical protein
748	 42.30	0	746226..747140	+	304	15606354	rhdA1	aq_1076	-	thiosulfate sulfurtransferase
749	 30.33	-2	747481..748146	+	221	15606355	-	aq_1078	-	hypothetical protein
750	 30.22	-2	748376..749626	+	416	15606356	-	aq_1079	-	hypothetical protein
751	 33.15	-2	749630..752287	+	885	15606357	-	aq_1080	-	hypothetical protein
752	 42.11	0	752277..753917	-	546	15606358	cysD	aq_1081	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
753	 45.28	0	754007..755044	+	345	15606359	rfbD	aq_1082	-	GDP-D-mannose dehydratase
754	 42.28	0	755047..755415	-	122	15606360	-	aq_1084	-	hypothetical protein
755	 42.06	0	756060..757469	-	469	15606361	-	aq_1085	-	hypothetical protein
756	 47.16	+1	757481..759766	-	761	15606362	-	aq_1088	-	hypothetical protein
757	 40.18	0	759811..761007	-	398	15606363	hylA	aq_1091	-	hemolysin
758	 39.98	0	761152..762429	+	425	15606364	-	aq_1093	-	hypothetical protein
759	 40.72	0	762407..763597	-	396	15606365	abcT4	aq_1094	-	ABC transporter
760	 34.37	-2	763594..764364	-	256	15606366	abcT3	aq_1095	-	ABC transporter
761	 31.18	-2	764571..766337	-	588	15606367	mtfA	aq_1096	-	mannosyltransferase A
762	 36.17	-1	766601..768295	+	564	15606368	abcT5	aq_1097	-	ABC transporter
763	 48.92	+1	768292..769221	-	309	15606369	fabH	aq_1099	-	3-oxoacyl-(acyl carrier protein) synthase III
764	 46.94	0	769222..770235	-	337	15606370	plsX	aq_1101	-	putative glycerol-3-phosphate acyltransferase PlsX
765	 46.35	0	770235..770426	-	63	15606371	rpmF	aq_1102	-	ribosomal protein L32
766	 45.52	0	770426..770950	-	174	15606372	-	aq_1103	-	hypothetical protein
767	 42.07	0	770996..772048	+	350	15606373	-	aq_1104	-	hypothetical protein
768	 49.12	+1	772057..772740	+	227	15606374	purQ	aq_1105	-	phosphoribosyl formylglycinamidine synthase I
769	 44.38	0	772733..773836	+	367	15606375	-	aq_1106	-	hypothetical protein
770	 42.62	0	773849..774085	+	78	15607139	moaD	aq_1106a	-	molybdopterin converting factor, small subunit
771	 46.32	0	774106..774621	+	171	15606376	gcsH4	aq_1108	-	glycine cleavage system protein H
772	 44.55	0	774618..775937	+	439	15606377	gcsP2	aq_1109	-	glycine dehydrogenase subunit 1
773	 43.86	0	775923..776378	-	151	15606378	-	aq_1110	-	hypothetical protein
774	 43.99	0	776595..777260	+	221	15606379	-	aq_1111	-	hypothetical protein
775	 41.04	0	777271..778230	+	319	15606380	-	aq_1113	-	hypothetical protein
776	 41.73	0	778227..780167	+	646	15606381	hksP1	aq_1115	-	histidine kinase sensor protein
777	 41.74	0	780148..781467	+	439	15606382	ntrC1	aq_1117	-	NtrC family transcriptional regulator
778	 43.01	0	781521..782078	+	185	15606383	-	aq_1119	-	hypothetical protein
779	 48.41	+1	782351..782854	+	167	15606384	-	aq_1120	-	hypothetical protein
780	 42.13	0	782895..783701	+	268	15606385	-	aq_1121	-	hypothetical protein
781	 45.58	0	783682..786834	-	1050	15606386	acrD2	aq_1122	-	AcrB/AcrD/AcrF family cation efflux protein
782	 45.06	0	786841..788835	-	664	15606387	ctrA3	aq_1125	-	cation transporter E1-E2 family ATPase
783	 43.09	0	788837..789205	-	122	15606388	-	aq_1127	-	hypothetical protein
784	 44.17	0	789211..789579	-	122	15606389	-	aq_1129	-	hypothetical protein
785	 46.97	0	789593..791176	-	527	15606390	sufI	aq_1130	-	periplasmic cell division protein (SufI)
786	 44.79	0	791189..792523	-	444	15606391	czcB1	aq_1132	-	cation efflux system (czcB-like)
787	 35.62	-2	792520..793698	-	392	15606392	-	aq_1133	-	hypothetical protein
788	 44.82	0	793767..794837	-	356	15606393	proB	aq_1134	-	gamma-glutamyl kinase
789	 44.90	0	794867..795739	+	290	15606394	-	aq_1137	-	hypothetical protein
790	 45.81	0	795750..796214	+	154	15606395	rpiB	aq_1138	-	ribose 5-phosphate isomerase B
791	 41.72	0	796183..797529	+	448	15606396	ftsW	aq_1139	-	cell division protein FtsW
792	 48.67	+1	797533..798738	+	401	15606397	argG	aq_1140	-	argininosuccinate synthase
793	 42.95	0	798771..799841	+	356	15606398	-	aq_1141	-	hypothetical protein
794	 42.67	0	799806..800855	-	349	15606399	-	aq_1142	-	hypothetical protein
795	 47.57	+1	800897..801781	+	294	15606400	dapA	aq_1143	-	dihydrodipicolinate synthase
796	 41.36	0	801764..802810	-	348	15606401	pabB	aq_1144	-	p-aminobenzoate synthetase
797	 47.59	+1	802807..803970	-	387	15606402	dhaT	aq_1145	-	1,3 propanediol dehydrogenase
798	 46.65	0	803996..805384	-	462	15606403	-	aq_1148	-	hypothetical protein
799	 41.35	0	805785..808229	-	814	15606404	-	aq_1151	-	hypothetical protein
800	 47.92	+1	808278..809525	-	415	15606405	lysC	aq_1152	-	aspartokinase
801	 48.63	+1	809561..810691	+	376	15606406	metK	aq_1154	-	S-adenosylmethionine synthetase
802	 42.53	0	810680..811831	-	383	15606407	hisS2	aq_1155	-	histidyl-tRNA synthetase
803	 46.12	0	811828..813516	-	562	15606408	hoxX	aq_1156	-	hydrogenase regulation HoxX
804	 46.98	0	813529..814671	-	380	15606409	hypD	aq_1157	-	hydrogenase expression/formation protein HypD
805	 44.74	0	814948..818481	+	1177	15606410	topG1	aq_1159	-	reverse gyrase
806	 43.12	0	818518..818895	+	125	15606411	-	aq_1163	-	hypothetical protein
807	 47.48	+1	819009..819743	+	244	15606412	-	aq_1166	-	hypothetical protein
808	 48.03	+1	819763..820932	+	389	15606413	forA2	aq_1167	-	ferredoxin oxidoreductase alpha subunit
809	 47.01	0	820956..821825	+	289	15606414	forB2	aq_1168	-	ferredoxin oxidoreductase beta subunit
810	 45.89	0	821822..822514	+	230	15606415	forG2	aq_1169	-	ferredoxin oxidoreductase gamma subunit
43.45	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.