IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.33	0	1..2100	+	699	15605613	fusA	aq_001	-	elongation factor EF-G
2	 49.59	+1	2117..3334	+	405	15605614	tufA1	aq_005	-	elongation factor Tu
3	 46.03	0	3346..3660	+	104	15605615	rpsJ	aq_008	-	ribosomal protein S10
4	 48.21	+1	3665..4390	+	241	15605616	rplC	aq_009	-	ribosomal protein L03
5	 43.17	0	4387..4986	+	199	15605617	rplD	aq_011	-	50S ribosomal protein L4
6	 41.67	0	4990..5301	+	103	15605618	rplW	aq_012	-	ribosomal protein L23
7	 49.18	+1	5313..6227	+	304	15605619	rplB	aq_013	-	50S ribosomal protein L2
8	 45.10	0	6340..6900	+	186	15605620	rpsS	aq_015	-	ribosomal protein S19
9	 46.80	0	7018..7314	+	98	15605621	rplV	aq_016a	-	ribosomal protein L22
10	 47.73	+1	7317..7955	+	212	15605622	rpsC	aq_017	-	ribosomal protein S03
11	 49.65	+1	8017..8445	+	142	15605623	rplP	aq_018	-	50S ribosomal protein L16
12	 37.39	-1	8457..8678	+	73	15607133	rpmC	aq_018a	-	50S ribosomal protein L29
13	 44.75	0	8678..9001	+	107	15605624	rpsQ	aq_020	-	30S ribosomal protein S17
14	 42.42	0	9001..9660	+	219	15605625	aroD	aq_021	-	3-dehydroquinate dehydratase
15	 41.32	0	9657..10157	-	166	15605626	-	aq_022	-	hypothetical protein
16	 45.62	0	10169..11299	-	376	15605627	argD	aq_023	-	N-acetylornithine aminotransferase
17	 44.52	0	11296..12609	-	437	15605628	nsd	aq_024	-	nucleotide sugar dehydrogenase
18	 43.07	0	12887..14005	-	372	15605629	rodA	aq_025	-	rod shape determining protein RodA
19	 43.33	0	13974..14183	-	69	15607137	thiS	aq_025a	-	sulfur transfer protein involved in thiamine biosynthesis
20	 45.13	0	14174..14656	-	160	15605630	-	aq_026	-	hypothetical protein
21	 39.91	0	14676..16454	-	592	15605631	-	aq_027	-	hypothetical protein
22	 40.42	0	16527..17006	-	159	15605632	-	aq_028	-	hypothetical protein
23	 48.30	+1	17053..18261	+	402	15605633	moeA1	aq_030	-	molybdenum cofactor biosynthesis protein A
24	 46.09	0	18275..19615	+	446	15605634	trnS	aq_031	-	transporter
25	 49.20	+1	19620..21062	+	480	15605635	-	aq_032	-	hypothetical protein
26	 38.12	-1	21051..22346	-	431	15605636	-	aq_035	-	hypothetical protein
27	 41.62	0	22379..22885	+	168	15605637	-	aq_036	-	hypothetical protein
28	 40.91	0	22998..23525	+	175	15605638	-	aq_037	-	hypothetical protein
29	 42.91	0	23541..24407	+	288	15605639	hibD	aq_038	-	3-hydroxyisobutyrate dehydrogenase
30	 46.29	0	24404..24982	-	192	15605640	hisB	aq_039	-	imidazoleglycerolphosphate dehydratase
31	 40.29	0	24997..26217	-	406	15605641	-	aq_040	-	hypothetical protein
32	 41.67	0	26274..26585	-	103	15605642	-	aq_041	-	hypothetical protein
33	 43.85	0	26618..27340	-	240	15605643	cyc	aq_042	-	cytochrome c
34	 45.69	0	27337..28566	-	409	15605644	petB	aq_044	-	cytochrome b
35	 48.72	+1	28580..29125	-	181	15605645	petA	aq_045	-	Rieske-I iron sulfur protein
36	 46.69	0	29251..30171	+	306	15605646	pyrD	aq_046	-	dihydroorotase dehydrogenase
37	 42.67	0	30179..30478	+	99	15605647	phhB	aq_049	-	pterin-4a-carbinolamine dehydratase
38	 35.60	-2	30475..33036	+	853	15605648	-	aq_050	-	hypothetical protein
39	 42.46	0	33033..33887	-	284	15605649	ubiA	aq_052	-	4-hydroxybenzoate octaprenyltransferase
40	 44.17	0	33884..34963	-	359	15605650	mraY	aq_053	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
41	 44.01	0	34963..35580	-	205	15605651	-	aq_054	-	hypothetical protein
42	 40.71	0	35564..36322	+	252	15605652	hemX1	aq_055	-	cytochrome c biogenesis protein
43	 44.59	0	36306..36758	-	150	15605653	fabZ	aq_056	-	(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase
44	 39.69	-1	36782..37426	+	214	15605654	sfsA	aq_057	-	sugar fermentation stimulation protein
45	 39.32	-1	37923..38273	+	116	15605655	-	aq_058	-	hypothetical protein
46	 50.19	+1	38395..38922	+	175	15605656	-	aq_059	-	hypothetical protein
47	 45.44	0	38923..39459	-	178	15605657	mogA	aq_061	-	molybdenum cofactor biosynthesis protein
48	 46.86	0	39496..40338	+	280	15605658	speE	aq_062	-	spermidine synthase
49	 43.54	0	40413..40745	+	110	15605659	rpsF	aq_063	-	ribosomal protein S06
50	 43.24	0	40735..41178	+	147	15605660	ssb	aq_064	-	single stranded DNA-binding protein
51	 41.10	0	41197..41415	+	72	15605661	rpsR	aq_064a	-	ribosomal protein S18
52	 44.44	0	41470..41649	+	59	15605662	-	aq_064b	-	hypothetical protein
53	 46.58	0	41650..41883	+	77	15605663	-	aq_064c	-	hypothetical protein
54	 38.93	-1	41880..42773	-	297	15605664	-	aq_065	-	hypothetical protein
55	 46.03	0	42795..43763	+	322	15605665	-	aq_066	-	hypothetical protein
56	 45.61	0	43756..44268	-	170	15605666	dmsB2	aq_067	-	dimethylsulfoxide reductase chain B
57	 47.34	+1	44501..44857	-	118	15605667	rplQ	aq_069	-	ribosomal protein L17
58	 42.98	0	44863..45816	-	317	15605668	rpoA	aq_070	-	DNA-directed RNA polymerase subunit alpha
59	 44.65	0	45829..46464	-	211	15605669	rpsD	aq_072	-	30S ribosomal protein S4
60	 48.68	+1	46465..46842	-	125	15605670	rpsK	aq_073	-	30S ribosomal protein S11
61	 45.93	0	46858..47238	-	126	15605671	rpsM	aq_074	-	30S ribosomal protein S13
62	 43.33	0	47216..47365	-	49	15605672	rpmJ	aq_075	-	ribosomal protein L36
63	 48.56	+1	47426..47668	-	80	15605673	infA	aq_075a	-	initiation factor IF-1
64	 47.62	+1	47671..48447	-	258	15605674	map	aq_076	-	methionyl aminopeptidase
65	 44.77	0	48437..49057	-	206	15605675	kad	aq_078	-	adenylate kinase
66	 44.88	0	49062..50351	-	429	15605676	secY	aq_079	-	preprotein translocase subunit SecY
67	 47.62	+1	50396..50605	+	69	15605677	rpmB	aq_080	-	ribosomal protein L28
68	 49.29	+1	50605..51801	+	398	15605678	aroC	aq_081	-	chorismate synthase
69	 35.66	-2	51803..52405	+	200	15605679	-	aq_082	-	hypothetical protein
70	 41.10	0	52390..53406	-	338	15605680	-	aq_083	-	hypothetical protein
71	 48.26	+1	53671..54474	+	267	15605681	kdsA	aq_085	-	2-dehydro-3-deoxyphosphooctonate aldolase
72	 43.74	0	54471..55133	+	220	15605682	modC	aq_086	-	molybdenum ABC transporter permease
73	 48.54	+1	55256..55597	+	113	15605683	-	aq_087	-	hypothetical protein
74	 47.92	+1	55612..55947	+	111	15605684	-	aq_088	-	hypothetical protein
75	 44.94	0	55975..56379	+	134	15605685	-	aq_090	-	hypothetical protein
76	 44.95	0	56372..57964	+	530	15607134	-	aq_091m	-	AAA ATPase family protein
77	 46.01	0	57961..60366	-	801	15605686	nrdA	aq_094	-	ribonucleotide reductase alpha chain
78	 43.63	0	60452..61675	-	407	15605687	-	aq_097	-	hypothetical protein
79	 46.20	0	61696..61998	+	100	15605688	secG	aq_098	-	protein export membrane protein SecG
80	 42.67	0	61934..62779	+	281	15605689	hemK	aq_099	-	protoporphyrinogen oxidase
81	 43.49	0	62770..64020	+	416	15605690	hly3	aq_101	-	hemolysin
82	 42.51	0	63986..64726	-	246	15605691	-	aq_103	-	hypothetical protein
83	 43.85	0	64729..65841	-	370	15605692	-	aq_104	-	hypothetical protein
84	 40.83	0	65727..66446	+	239	15605693	-	aq_106	-	hypothetical protein
85	 37.96	-1	65828..66151	-	107	15607135	rbfA	aq_106a	-	ribosome-binding factor A
86	 46.46	0	66706..66903	+	65	15605694	fdx4	aq_108a	-	ferredoxin
87	 41.98	0	66900..67142	-	80	15605695	hfq	aq_108b	-	host factor I
88	 46.31	0	67339..67677	+	112	15605696	glnB	aq_109	-	nitrogen regulatory PII protein
89	 47.09	0	67698..69107	+	469	15605697	glnA	aq_111	-	glutamine synthetase
90	 46.62	0	69169..70440	+	423	15605698	amtB	aq_112	-	ammonium transporter
91	 46.04	0	70454..71500	+	348	15605699	-	aq_113	-	hypothetical protein
92	 44.90	0	71803..72243	-	146	15605700	-	aq_114	-	hypothetical protein
93	 42.99	0	72560..74122	-	520	15605701	-	aq_116	-	hypothetical protein
94	 47.82	+1	74123..75316	-	397	15605702	pgk	aq_118	-	phosphoglycerate kinase
95	 46.48	0	75328..75981	-	217	15605703	talC	aq_119	-	putative translaldolase
96	 46.65	0	76010..77038	-	342	15605704	-	aq_121	-	hypothetical protein
97	 47.03	0	77035..78246	-	403	15605705	hisS1	aq_122	-	histidyl-tRNA synthetase
98	 41.89	0	78328..78666	+	112	15605706	rpsP	aq_123	-	ribosomal protein S16
99	 45.83	0	78663..78902	+	79	15605707	-	aq_124a	-	hypothetical protein
100	 37.09	-1	78902..79300	+	132	15605708	-	aq_125	-	hypothetical protein
43.45	MEAN

3.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.