IslandPathversion 1.0

IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.45 STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
244	 44.49	0	217910..218716	-	268	15605852	cysQ	aq_337	-	CysQ protein
245	 42.05	0	218720..219373	-	217	15605853	-	aq_338	-	hypothetical protein
246	 31.68	-2	219402..221159	+	585	15605854	-	aq_340	-	hypothetical protein
247	 38.21	-1	222065..222556	+	163	15605855	-	aq_341	-	hypothetical protein
248	 42.51	0	222567..223340	+	257	15605856	-	aq_342	-	hypothetical protein
249	 39.89	0	223332..224231	-	299	15605857	arsA2	aq_343	-	anion transporting ATPase
250	 42.23	0	224228..225160	-	310	15605858	rfaD	aq_344	-	ADP-L-glycero-D-manno-heptose-6-epimerase
251	 43.08	0	225588..227465	+	625	15605859	-	aq_345	-	hypothetical protein
252	 44.91	0	227462..228040	-	192	15605860	pth	aq_346	-	peptidyl-tRNA hydrolase
253	 48.25	+1	228045..228500	-	151	15605861	ctc	aq_348	-	general stress protein Ctc
254	 48.32	+1	228716..229936	+	406	15605862	ribA	aq_350	-	GTP cyclohydrolase II
255	 48.50	+1	229933..231837	-	634	15605863	leuS	aq_351	-	leucyl-tRNA synthetase alpha subunit
256	 47.43	+1	231841..232578	-	245	15605864	-	aq_355	-	hypothetical protein
257	 46.38	0	232592..234178	-	528	15605865	leuA1	aq_356	-	alpha-isopropylmalate/homocitrate synthase family transferase
258	 38.95	-1	234260..234526	+	88	15605866	flgM	aq_357a	-	anti sigma factor FlgM
259	 42.46	0	234590..236518	+	642	15605867	dinG	aq_358	-	ATP-dependent helicase DinG
260	 37.72	-1	236530..237600	+	356	15605868	-	aq_359	-	hypothetical protein
261	 45.56	0	237559..238302	-	247	15605869	timA	aq_360	-	triose phophate isomerase
262	 43.36	0	238638..239435	-	265	15605870	-	aq_362	-	hypothetical protein
263	 43.06	0	239435..239866	-	143	15605871	-	aq_363	-	hypothetical protein
264	 40.74	0	239863..240240	-	125	15605872	-	aq_364	-	hypothetical protein
265	 44.83	0	240237..241949	-	570	15605873	proS	aq_365	-	prolyl-tRNA synthetase
266	 38.50	-1	241994..244546	+	850	15605874	-	aq_367	-	hypothetical protein
267	 37.54	-1	245338..246288	-	316	15605875	-	aq_369	-	hypothetical protein
268	 41.01	0	246281..246814	-	177	15605876	-	aq_370	-	hypothetical protein
269	 41.60	0	246792..248981	-	729	15605877	-	aq_371	-	hypothetical protein
270	 35.59	-2	248932..250527	-	531	15605878	-	aq_372	-	hypothetical protein
271	 41.82	0	250518..251177	-	219	15605879	-	aq_373	-	hypothetical protein
272	 39.01	-1	251158..252231	-	357	15605880	-	aq_374	-	hypothetical protein
273	 35.99	-2	252309..253250	-	313	15605881	-	aq_376	-	hypothetical protein
274	 38.39	-1	253252..253587	-	111	15605882	-	aq_377	-	hypothetical protein
275	 29.74	-2	253592..254953	-	453	15605883	-	aq_378	-	hypothetical protein
276	 31.02	-2	254950..256071	-	373	15605884	-	aq_380	-	hypothetical protein
277	 34.00	-2	256087..256986	-	299	15605885	-	aq_381	-	hypothetical protein
278	 28.83	-2	257019..257906	-	295	15605886	-	aq_382	-	hypothetical protein
279	 33.60	-2	257872..258615	-	247	15605887	-	aq_383	-	hypothetical protein
280	 37.56	-1	258857..259258	-	133	15605888	-	aq_384	-	hypothetical protein
281	 36.82	-1	259248..260135	-	295	15605889	-	aq_385	-	hypothetical protein
282	 31.19	-2	260132..261109	-	325	15605890	-	aq_386	-	hypothetical protein
283	 30.87	-2	261090..262955	-	621	15605891	-	aq_387	-	hypothetical protein
284	 34.44	-2	263585..264490	+	301	15605892	-	aq_388	-	hypothetical protein
285	 47.54	+1	265099..265647	+	182	15605893	-	aq_389	-	hypothetical protein
286	 46.95	0	265667..266092	+	141	15605894	-	aq_390	-	hypothetical protein
287	 46.08	0	266219..266971	+	250	15605895	-	aq_391	-	hypothetical protein
288	 46.79	0	267030..267698	+	222	15605896	-	aq_392	-	hypothetical protein
289	 48.30	+1	267846..268373	+	175	15605897	-	aq_394	-	hypothetical protein
290	 47.59	+1	268431..269489	+	352	15605898	hdrA	aq_395	-	heterodisulfide reductase subunit A
291	 44.93	0	269486..270304	+	272	15605899	-	aq_397	-	hypothetical protein
292	 45.28	0	270319..271080	+	253	15605900	hdrC	aq_398	-	heterodisulfide reductase subunit C
293	 48.59	+1	271093..272088	+	331	15605901	hdrB	aq_400	-	heterodisulfide reductase subunit B
294	 46.81	0	272163..272570	+	135	15605902	-	aq_401	-	hypothetical protein
295	 50.34	+1	272598..273044	+	148	15605903	-	aq_402	-	glycine cleavage system protein H
296	 43.66	0	273087..274112	+	341	15605904	-	aq_403	-	hypothetical protein
297	 44.01	0	274129..275271	+	380	15605905	-	aq_404	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
298	 38.16	-1	275231..276100	-	289	15605906	-	aq_406	-	hypothetical protein
299	 49.02	+1	276097..276708	-	203	15605907	-	aq_407	-	hypothetical protein
300	 39.62	-1	276724..277248	-	174	15605908	-	aq_408	-	hypothetical protein
301	 42.12	0	277239..278114	-	291	15605909	pyrB	aq_409	-	aspartate carbamoyltransferase catalytic chain
302	 43.64	0	278111..279226	-	371	15605910	carA	aq_410	-	carbamoyl phosphate synthase small subunit
303	 44.20	0	279846..282320	+	824	15605911	pcnB1	aq_411	-	poly A polymerase
304	 45.05	0	282323..283039	+	238	15605912	abcT7	aq_413	-	ABC transporter
305	 44.02	0	283036..284355	+	439	15605913	-	aq_414	-	hypothetical protein
306	 43.90	0	284327..285490	+	387	15605914	napA1	aq_415	-	Na(+)/H(+) antiporter
307	 45.85	0	285507..286553	+	348	15605915	-	aq_416	-	hypothetical protein
308	 43.33	0	286550..287209	+	219	15605916	abcT6	aq_417	-	ABC transporter
309	 51.00	+2	287456..287857	-	133	15605917	gspG	aq_418	-	general secretion pathway protein G
310	 43.84	0	287857..288189	-	110	15605918	-	aq_419	-	hypothetical protein
311	 39.37	-1	288189..288536	-	115	15605919	-	aq_420	-	hypothetical protein
312	 45.72	0	288568..289689	+	373	15605920	aspC3	aq_421	-	aminotransferase
313	 46.43	0	289705..290040	+	111	15605921	metG'	aq_422	-	methionyl-tRNA synthetase beta subunit
314	 41.75	0	290037..290654	+	205	15605922	-	aq_423	-	hypothetical protein
315	 47.69	+1	290643..291701	-	352	15605923	thrC2	aq_425	-	threonine synthase
316	 42.35	0	291728..292093	-	121	15605924	-	aq_427	-	hypothetical protein
317	 43.62	0	292111..292557	-	148	15605925	-	aq_428	-	D-tyrosyl-tRNA deacylase
318	 41.30	0	292832..293572	+	246	15605926	-	aq_429	-	hypothetical protein
319	 46.38	0	293549..294100	-	183	15605927	-	aq_430	-	hypothetical protein
320	 42.99	0	294248..294796	-	182	15605928	grpE	aq_433	-	heat shock protein GrpE
321	 39.55	-1	294816..296294	-	492	15605929	glpK	aq_434	-	glycerol kinase
322	 46.22	0	296291..296965	-	224	15605930	ribD2	aq_436	-	riboflavin specific deaminase
323	 45.87	0	297105..299003	+	632	15605931	nuoG	aq_437	-	NADH dehydrogenase I chain G
324	 46.04	0	299119..300078	-	319	15605932	-	aq_438	-	hypothetical protein
325	 47.17	+1	300317..300829	-	170	15605933	-	aq_439	-	hypothetical protein
326	 40.75	0	300870..301664	+	264	15605934	-	aq_440	-	hypothetical protein
327	 41.82	0	301661..302320	-	219	15605935	-	aq_442	-	hypothetical protein
328	 44.35	0	302447..303136	+	229	15605936	gua	aq_443	-	glutaredoxin-like protein
329	 46.81	0	303136..303966	+	276	15605937	accD	aq_445	-	acetyl-CoA carboxyltransferase beta subunit
330	 46.46	0	303963..304640	+	225	15605938	mgtC	aq_447	-	Mg(2+) transport ATPase
331	 40.89	0	304651..304941	+	96	15605939	-	aq_448	-	hypothetical protein
332	 47.47	+1	304932..305306	+	124	15605940	-	aq_449	-	hypothetical protein
333	 39.94	0	305303..305620	+	105	15605941	-	aq_450	-	hypothetical protein
334	 48.69	+1	305617..307374	-	585	15605942	ilvB	aq_451	-	acetolactate synthase large subunit
335	 41.34	0	307708..308481	-	257	15605943	-	aq_453	-	hypothetical protein
336	 44.47	0	308469..309581	-	370	15605944	-	aq_454	-	hypothetical protein
337	 45.31	0	309613..310614	-	333	15605945	sor	aq_455	-	sulfur oxygenase reductase
338	 42.46	0	310732..311235	+	167	15605946	bcp	aq_458	-	bacterioferritin comigratory protein
339	 46.48	0	311258..311782	+	174	15605947	-	aq_459	-	hypothetical protein
340	 42.32	0	311779..312390	+	203	15605948	-	aq_460	-	hypothetical protein
341	 45.23	0	312402..313838	+	478	15605949	gatB	aq_461	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
342	 35.96	-2	313851..314192	+	113	15605950	-	aq_465	-	hypothetical protein
343	 45.00	0	314640..315419	+	259	15605951	-	aq_467	-	hypothetical protein
43.45	MEAN

3.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.