IslandPathversion 1.0

IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.45 STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 44.38	0	184528..185025	-	165	15605820	-	aq_283	-	hypothetical protein
213	 44.67	0	185022..186344	-	440	15605821	-	aq_284	-	hypothetical protein
214	 39.20	-1	186373..186900	-	175	15605822	-	aq_286	-	hypothetical protein
215	 42.41	0	186900..187373	-	157	15605823	smpB	aq_287	-	SsrA-binding protein
216	 44.99	0	187381..188349	-	322	15605824	-	aq_288	-	hypothetical protein
217	 45.98	0	188378..189856	+	492	15605825	-	aq_291	-	hypothetical protein
218	 36.62	-1	189867..190262	+	131	15605826	-	aq_293	-	hypothetical protein
219	 39.78	0	190268..191383	+	371	15605827	-	aq_294	-	hypothetical protein
220	 42.69	0	191380..192630	+	416	15605828	-	aq_296	-	hypothetical protein
221	 46.22	0	192623..193297	+	224	15605829	abcT8	aq_297	-	ABC transporter
222	 46.48	0	193284..194561	-	425	15605830	serS	aq_298	-	seryl-tRNA synthetase
223	 47.22	+1	194591..196369	+	592	15605831	glmS	aq_301	-	glucosamine-fructose-6-phosphate aminotransferase
224	 46.67	0	196370..196714	-	114	15605832	-	aq_302	-	hypothetical protein
225	 42.01	0	196711..197817	-	368	15605833	-	aq_303	-	hypothetical protein
226	 47.06	0	197804..200674	-	956	15605834	ileS	aq_305	-	isoleucyl-tRNA synthetase
227	 44.30	0	200713..203292	+	859	15605835	mutS1	aq_308	-	DNA mismatch repair protein
228	 43.51	0	204008..204754	-	248	15605836	-	aq_311	-	hypothetical protein
229	 45.83	0	204741..205580	-	279	15605837	-	aq_313	-	hypothetical protein
230	 40.87	0	205589..206026	-	145	15605838	-	aq_314	-	hypothetical protein
231	 41.05	0	206135..207067	-	310	15605839	hksP2	aq_316	-	histidine kinase sensor protein
232	 42.94	0	207352..208038	+	228	15605840	phoB	aq_319	-	transcriptional regulator (PhoB-like)
233	 40.87	0	208049..208645	+	198	15605841	-	aq_321	-	hypothetical protein
234	 41.75	0	208642..209841	-	399	15605842	dnaA	aq_322	-	chromosome replication initiator protein DnaA
235	 45.00	0	209932..210942	-	336	15605843	-	aq_323	-	hypothetical protein
236	 44.57	0	211034..211816	+	260	15605844	-	aq_324	-	hypothetical protein
237	 44.18	0	211813..212577	-	254	15605845	murI	aq_325	-	glutamate racemase
238	 37.29	-1	212605..213666	+	353	15605846	kdtA	aq_326	-	3-deoxy-D-manno-2-octulosonic acid transferase
239	 46.56	0	213641..214411	-	256	15605847	-	aq_327	-	hypothetical protein
240	 44.38	0	214370..214885	+	171	15605848	-	aq_328	-	hypothetical protein
241	 42.63	0	214915..215796	+	293	15605849	-	aq_331	-	hypothetical protein
242	 44.64	0	215954..216970	+	338	15605850	dcuP	aq_334	-	uroporphyrinogen decarboxylase
243	 45.52	0	217169..217759	-	196	15605851	-	aq_336	-	hypothetical protein
244	 44.49	0	217910..218716	-	268	15605852	cysQ	aq_337	-	CysQ protein
245	 42.05	0	218720..219373	-	217	15605853	-	aq_338	-	hypothetical protein
246	 31.68	-2	219402..221159	+	585	15605854	-	aq_340	-	hypothetical protein
247	 38.21	-1	222065..222556	+	163	15605855	-	aq_341	-	hypothetical protein
248	 42.51	0	222567..223340	+	257	15605856	-	aq_342	-	hypothetical protein
249	 39.89	0	223332..224231	-	299	15605857	arsA2	aq_343	-	anion transporting ATPase
250	 42.23	0	224228..225160	-	310	15605858	rfaD	aq_344	-	ADP-L-glycero-D-manno-heptose-6-epimerase
251	 43.08	0	225588..227465	+	625	15605859	-	aq_345	-	hypothetical protein
252	 44.91	0	227462..228040	-	192	15605860	pth	aq_346	-	peptidyl-tRNA hydrolase
253	 48.25	+1	228045..228500	-	151	15605861	ctc	aq_348	-	general stress protein Ctc
254	 48.32	+1	228716..229936	+	406	15605862	ribA	aq_350	-	GTP cyclohydrolase II
255	 48.50	+1	229933..231837	-	634	15605863	leuS	aq_351	-	leucyl-tRNA synthetase alpha subunit
256	 47.43	+1	231841..232578	-	245	15605864	-	aq_355	-	hypothetical protein
257	 46.38	0	232592..234178	-	528	15605865	leuA1	aq_356	-	alpha-isopropylmalate/homocitrate synthase family transferase
258	 38.95	-1	234260..234526	+	88	15605866	flgM	aq_357a	-	anti sigma factor FlgM
259	 42.46	0	234590..236518	+	642	15605867	dinG	aq_358	-	ATP-dependent helicase DinG
260	 37.72	-1	236530..237600	+	356	15605868	-	aq_359	-	hypothetical protein
261	 45.56	0	237559..238302	-	247	15605869	timA	aq_360	-	triose phophate isomerase
262	 43.36	0	238638..239435	-	265	15605870	-	aq_362	-	hypothetical protein
263	 43.06	0	239435..239866	-	143	15605871	-	aq_363	-	hypothetical protein
264	 40.74	0	239863..240240	-	125	15605872	-	aq_364	-	hypothetical protein
265	 44.83	0	240237..241949	-	570	15605873	proS	aq_365	-	prolyl-tRNA synthetase
266	 38.50	-1	241994..244546	+	850	15605874	-	aq_367	-	hypothetical protein
267	 37.54	-1	245338..246288	-	316	15605875	-	aq_369	-	hypothetical protein
268	 41.01	0	246281..246814	-	177	15605876	-	aq_370	-	hypothetical protein
269	 41.60	0	246792..248981	-	729	15605877	-	aq_371	-	hypothetical protein
270	 35.59	-2	248932..250527	-	531	15605878	-	aq_372	-	hypothetical protein
271	 41.82	0	250518..251177	-	219	15605879	-	aq_373	-	hypothetical protein
272	 39.01	-1	251158..252231	-	357	15605880	-	aq_374	-	hypothetical protein
273	 35.99	-2	252309..253250	-	313	15605881	-	aq_376	-	hypothetical protein
274	 38.39	-1	253252..253587	-	111	15605882	-	aq_377	-	hypothetical protein
275	 29.74	-2	253592..254953	-	453	15605883	-	aq_378	-	hypothetical protein
276	 31.02	-2	254950..256071	-	373	15605884	-	aq_380	-	hypothetical protein
277	 34.00	-2	256087..256986	-	299	15605885	-	aq_381	-	hypothetical protein
278	 28.83	-2	257019..257906	-	295	15605886	-	aq_382	-	hypothetical protein
279	 33.60	-2	257872..258615	-	247	15605887	-	aq_383	-	hypothetical protein
280	 37.56	-1	258857..259258	-	133	15605888	-	aq_384	-	hypothetical protein
281	 36.82	-1	259248..260135	-	295	15605889	-	aq_385	-	hypothetical protein
282	 31.19	-2	260132..261109	-	325	15605890	-	aq_386	-	hypothetical protein
283	 30.87	-2	261090..262955	-	621	15605891	-	aq_387	-	hypothetical protein
284	 34.44	-2	263585..264490	+	301	15605892	-	aq_388	-	hypothetical protein
285	 47.54	+1	265099..265647	+	182	15605893	-	aq_389	-	hypothetical protein
286	 46.95	0	265667..266092	+	141	15605894	-	aq_390	-	hypothetical protein
287	 46.08	0	266219..266971	+	250	15605895	-	aq_391	-	hypothetical protein
288	 46.79	0	267030..267698	+	222	15605896	-	aq_392	-	hypothetical protein
289	 48.30	+1	267846..268373	+	175	15605897	-	aq_394	-	hypothetical protein
290	 47.59	+1	268431..269489	+	352	15605898	hdrA	aq_395	-	heterodisulfide reductase subunit A
291	 44.93	0	269486..270304	+	272	15605899	-	aq_397	-	hypothetical protein
292	 45.28	0	270319..271080	+	253	15605900	hdrC	aq_398	-	heterodisulfide reductase subunit C
293	 48.59	+1	271093..272088	+	331	15605901	hdrB	aq_400	-	heterodisulfide reductase subunit B
294	 46.81	0	272163..272570	+	135	15605902	-	aq_401	-	hypothetical protein
295	 50.34	+1	272598..273044	+	148	15605903	-	aq_402	-	glycine cleavage system protein H
296	 43.66	0	273087..274112	+	341	15605904	-	aq_403	-	hypothetical protein
297	 44.01	0	274129..275271	+	380	15605905	-	aq_404	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
298	 38.16	-1	275231..276100	-	289	15605906	-	aq_406	-	hypothetical protein
299	 49.02	+1	276097..276708	-	203	15605907	-	aq_407	-	hypothetical protein
300	 39.62	-1	276724..277248	-	174	15605908	-	aq_408	-	hypothetical protein
301	 42.12	0	277239..278114	-	291	15605909	pyrB	aq_409	-	aspartate carbamoyltransferase catalytic chain
302	 43.64	0	278111..279226	-	371	15605910	carA	aq_410	-	carbamoyl phosphate synthase small subunit
303	 44.20	0	279846..282320	+	824	15605911	pcnB1	aq_411	-	poly A polymerase
304	 45.05	0	282323..283039	+	238	15605912	abcT7	aq_413	-	ABC transporter
305	 44.02	0	283036..284355	+	439	15605913	-	aq_414	-	hypothetical protein
306	 43.90	0	284327..285490	+	387	15605914	napA1	aq_415	-	Na(+)/H(+) antiporter
307	 45.85	0	285507..286553	+	348	15605915	-	aq_416	-	hypothetical protein
308	 43.33	0	286550..287209	+	219	15605916	abcT6	aq_417	-	ABC transporter
309	 51.00	+2	287456..287857	-	133	15605917	gspG	aq_418	-	general secretion pathway protein G
310	 43.84	0	287857..288189	-	110	15605918	-	aq_419	-	hypothetical protein
311	 39.37	-1	288189..288536	-	115	15605919	-	aq_420	-	hypothetical protein
43.45	MEAN

3.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.