IslandPathversion 1.0

IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.45 STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1430	 45.22	0	1455015..1455485	+	156	15607033	-	aq_2066	-	hypothetical protein
1431	 42.19	0	1455362..1455835	+	157	15607034	-	aq_2067	-	hypothetical protein
1432	 46.15	0	1455909..1456727	+	272	15607035	argB	aq_2068	-	acetylglutamate kinase
1433	 47.97	+1	1456740..1457771	+	343	15607036	obgE	aq_2069	-	GTPase ObgE
1434	 45.75	0	1457797..1458972	+	391	15607037	-	aq_2071	-	hypothetical protein
1435	 42.75	0	1458969..1460126	+	385	15607038	-	aq_2073	-	hypothetical protein
1436	 42.07	0	1460123..1461370	+	415	15607039	murD	aq_2075	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
1437	 40.33	0	1461357..1461971	-	204	15607040	trpF	aq_2076	-	phosphoribosyl anthranilate isomerase
1438	 47.21	+1	1461990..1463531	+	513	15607041	snf	aq_2077	-	SNF family Na(+)/neurotransmitter symporter
1439	 44.01	0	1463518..1464369	+	283	15607042	sppA	aq_2080	-	proteinase IV
1440	 43.87	0	1464647..1466260	+	537	15607043	-	aq_2082	-	hypothetical protein
1441	 44.23	0	1466246..1467310	-	354	15607044	hisC	aq_2084	-	histidinol-phosphate aminotransferase
1442	 39.48	-1	1467575..1468078	-	167	15607045	-	aq_2085	-	hypothetical protein
1443	 36.13	-1	1468059..1468415	-	118	15607046	-	aq_2086	-	hypothetical protein
1444	 40.40	0	1468412..1468963	-	183	15607047	-	aq_2087	-	hypothetical protein
1445	 42.01	0	1468992..1469498	+	168	15607048	-	aq_2088	-	hypothetical protein
1446	 48.00	+1	1469552..1471126	+	524	15607049	leuA2	aq_2090	-	2-isopropylmalate synthase
1447	 41.00	0	1471392..1472108	+	238	15607050	dsbC	aq_2093	-	thiol:disulfide interchange protein
1448	 44.90	0	1472329..1473573	-	414	15607051	aspC2	aq_2094	-	aminotransferase
1449	 43.80	0	1473566..1473928	-	120	15607052	dksA	aq_2095	-	dnaK suppressor protein
1450	 49.82	+1	1473947..1474504	-	185	15607053	floX	aq_2096	-	flavodoxin
1451	 45.71	0	1474521..1475360	-	279	15607054	-	aq_2098	-	hypothetical protein
1452	 46.83	0	1475353..1476834	-	493	15607055	pepA	aq_2099	-	leucine aminopeptidase
1453	 47.25	+1	1476861..1478534	+	557	15607056	carB2	aq_2101	-	carbamoyl-phosphate synthase large subunit
1454	 40.65	0	1478521..1479258	+	245	15607057	prmA	aq_2102	-	ribosomal protein L11 methyltransferase
1455	 48.66	+1	1479279..1479689	-	136	15607058	acs'	aq_2103	-	acetyl-coenzyme A synthetase c-terminal fragment
1456	 48.47	+1	1479634..1481166	-	510	15607059	acs	aq_2104	-	acetyl-coenzyme A synthetase
1457	 49.59	+1	1481860..1483323	+	487	15607060	ssf	aq_2106	-	SSF family Na(+)/solute symporter
1458	 41.29	0	1483320..1485179	+	619	15607061	-	aq_2107	-	hypothetical protein
1459	 41.86	0	1485176..1485808	+	210	15607062	-	aq_2108	-	hypothetical protein
1460	 48.24	+1	1485819..1486811	+	330	15607063	hemB	aq_2109	-	delta-aminolevulinic acid dehydratase
1461	 45.77	0	1486808..1487740	+	310	15607064	acuC2	aq_2110	-	acetoin utilization protein
1462	 39.90	0	1488032..1488808	+	258	15607065	-	aq_2113	-	hypothetical protein
1463	 45.88	0	1488786..1490156	-	456	15607066	eif	aq_2114	-	initiation factor eIF-2B alpha subunit
1464	 37.85	-1	1490168..1491274	-	368	15607067	rfaG	aq_2115	-	glucosyl transferase I
1465	 41.63	0	1491677..1492327	-	216	15607068	purC	aq_2117	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1466	 40.80	0	1492324..1492845	-	173	15607069	-	aq_2118	-	hypothetical protein
1467	 47.12	0	1492805..1493725	-	306	15607070	thiL	aq_2119	-	thiamine monophosphate kinase
1468	 45.00	0	1493722..1494990	-	422	15607071	hlyC	aq_2120	-	hemolysin homolog protein
1469	 44.88	0	1494959..1495876	-	305	15607072	abcT11	aq_2122	-	ABC transporter
1470	 44.64	0	1495878..1497248	-	456	15607073	hemN	aq_2124	-	coproporphyrinogen III oxidase
1471	 43.74	0	1497725..1499425	+	566	15607074	uvrC	aq_2126	-	repair excision nuclease subunit C
1472	 45.39	0	1499413..1499835	+	140	15607075	-	aq_2128	-	hypothetical protein
1473	 44.30	0	1500045..1500938	-	297	15607076	sbf	aq_2129	-	sodium bile acid symporter family Na(+) dependent transporter
1474	 48.68	+1	1501407..1502318	-	303	15607077	fmt	aq_2131	-	methionyl-tRNA formyltransferase
1475	 48.17	+1	1502315..1503163	-	282	15607078	panC	aq_2132	-	pantothenate synthetase
1476	 41.94	0	1503157..1503528	+	123	15607079	-	aq_2134	-	hypothetical protein
1477	 48.90	+1	1503518..1504153	+	211	15607080	-	aq_2135	-	hypothetical protein
1478	 43.83	0	1504146..1504907	+	253	15607081	abcT12	aq_2137	-	ABC transporter
1479	 42.79	0	1504917..1505540	+	207	15607082	-	aq_2138	-	hypothetical protein
1480	 43.73	0	1505500..1506153	+	217	15607083	-	aq_2139	-	hypothetical protein
1481	 44.44	0	1506134..1506439	-	101	15607084	-	aq_2140	-	hypothetical protein
1482	 42.86	0	1506462..1508456	+	664	15607085	glyS	aq_2141	-	glycyl-tRNA synthetase beta subunit
1483	 46.13	0	1508458..1511028	+	856	15607086	ppsA	aq_2142	-	phosphoenolpyruvate synthase
1484	 39.69	-1	1511025..1511921	+	298	15607087	-	aq_2144	-	hypothetical protein
1485	 34.87	-2	1511921..1512571	+	216	15607088	-	aq_2145	-	hypothetical protein
1486	 42.42	0	1512591..1514669	+	692	15607089	-	aq_2146	-	hypothetical protein
1487	 40.20	0	1514666..1515277	-	203	15607090	pal	aq_2147	-	peptidoglycan associated lipoprotein
1488	 43.86	0	1515575..1515859	+	94	15607091	gatC	aq_2147a	-	glutamyl-tRNA (Gln) amidotransferase subunit C
1489	 44.03	0	1515870..1516907	+	345	15607092	recA	aq_2150	-	recombinase A
1490	 41.51	0	1516861..1517973	+	370	15607093	pilU	aq_2151	-	twitching mobility protein
1491	 40.66	0	1517970..1518638	+	222	15607094	cmk	aq_2153	-	cytidylate kinase
1492	 33.15	-2	1518607..1519143	+	178	15607095	pgsA1	aq_2154	-	phosphotidylglycerophosphate synthase
1493	 43.17	0	1519140..1520756	+	538	15607096	recJ	aq_2155	-	single-strand-DNA-specific exonuclease RecJ
1494	 37.09	-1	1520800..1521225	+	141	15607097	-	aq_2157	-	hypothetical protein
1495	 43.66	0	1521202..1522740	-	512	15607098	pcnB2	aq_2158	-	poly A polymerase
1496	 43.92	0	1522790..1523365	+	191	15607099	-	aq_2159	-	hypothetical protein
1497	 44.84	0	1523352..1524107	+	251	15607100	abcT9	aq_2160	-	ABC transporter
1498	 42.90	0	1524118..1524744	+	208	15607101	uraP	aq_2163	-	uracil phosphoribosyltransferase
1499	 41.05	0	1524721..1525290	-	189	15607102	-	aq_2164	-	hypothetical protein
1500	 42.95	0	1525297..1526034	-	245	15607103	-	aq_2165	-	hypothetical protein
1501	 43.64	0	1526027..1526899	-	290	15607104	scbA	aq_2166	-	adhesion protein
1502	 43.90	0	1526912..1528321	-	469	15607105	-	aq_2168	-	hypothetical protein
1503	 49.31	+1	1528662..1529381	+	239	15607106	-	aq_2170	-	hypothetical protein
1504	 42.28	0	1529365..1529856	+	163	15607107	-	aq_2171	-	hypothetical protein
1505	 37.15	-1	1529849..1530346	+	165	15607108	-	aq_2172	-	hypothetical protein
1506	 42.30	0	1530315..1530749	+	144	15607109	-	aq_2173	-	hypothetical protein
1507	 40.92	0	1530746..1531048	+	100	15607110	ihfB	aq_2174	-	integration host factor beta subunit
1508	 43.37	0	1531150..1532115	+	321	15607111	-	aq_2175	-	hypothetical protein
1509	 42.60	0	1532112..1532618	+	168	15607112	aroK	aq_2177	-	shikimate kinase
1510	 48.01	+1	1532586..1533389	-	267	15607113	thiG	aq_2178	-	thiazole synthase
1511	 42.31	0	1533662..1534240	+	192	15607114	acrR2	aq_2179	-	TetR/AcrR family transcriptional regulator
1512	 48.39	+1	1534286..1534750	+	154	15607115	moaE	aq_2181	-	molybdopterin converting factor subunit 2
1513	 40.91	0	1534728..1535690	+	320	15607116	moaA	aq_2183	-	molybdenum cofactor biosynthesis protein A
1514	 40.24	0	1535687..1536265	-	192	15607117	-	aq_2185	-	hypothetical protein
1515	 48.41	+1	1536349..1537641	-	430	15607118	sqr	aq_2186	-	sulfide-quinone reductase
1516	 48.13	+1	1537820..1538596	+	258	15607119	coxC	aq_2188	-	cytochrome c oxidase subunit III
1517	 39.60	-1	1538598..1539395	+	265	15607120	-	aq_2189	-	hypothetical protein
1518	 43.60	0	1539398..1540108	+	236	15607121	coxB	aq_2190	-	cytochrome c oxidase subunit II
1519	 47.53	+1	1540270..1541727	+	485	15607122	coxA1	aq_2191	-	cytochrome c oxidase subunit I
1520	 41.09	0	1542278..1542535	+	85	15607123	coxB2	aq_2191a	-	cytochrome c oxidase subunit II
1521	 47.11	0	1542541..1544319	+	592	15607124	coxA2	aq_2192	-	cytochrome c oxidase subunit I
1522	 41.20	0	1544316..1545014	+	232	15607125	-	aq_2194	-	hypothetical protein
1523	 41.76	0	1544990..1545760	-	256	15607126	bacA	aq_2195	-	undecaprenol kinase
1524	 42.59	0	1545764..1546519	-	251	15607127	-	aq_2196	-	hypothetical protein
1525	 42.94	0	1546519..1547007	-	162	15607128	-	aq_2197	-	hypothetical protein
1526	 40.65	0	1547212..1547580	+	122	15607129	mopB	aq_2199	-	hypothetical protein
1527	 45.85	0	1547532..1549169	+	545	15607130	mopA	aq_2200	-	GroEL
1528	 36.93	-1	1549193..1549831	-	212	15607131	-	aq_2203	-	hypothetical protein
1529	 42.46	0	1549833..1551092	-	419	15607132	ymxG	aq_2204	-	processing protease
43.45	MEAN

3.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.