IslandPathversion 1.0

IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.45 STD DEV: 3.70
Aquifex aeolicus VF5, complete genome - 1..1551335
1529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1375	 47.42	+1	1395158..1395952	+	264	15606978	imp2	aq_1983	-	myo-inositol-1(or 4)-monophosphatase
1376	 40.95	0	1395949..1396539	+	196	15606979	-	aq_1985	-	hypothetical protein
1377	 41.18	0	1396523..1397248	-	241	15606980	-	aq_1986	-	hypothetical protein
1378	 43.78	0	1397248..1397649	-	133	15606981	-	aq_1987	-	hypothetical protein
1379	 45.85	0	1397654..1398268	-	204	15606982	tolQ	aq_1988	-	TolQ-like protein
1380	 43.95	0	1398272..1400833	-	853	15606983	-	aq_1989	-	hypothetical protein
1381	 42.72	0	1400808..1401446	-	212	15606984	pgmA	aq_1990	-	phosphoglycerate mutase
1382	 47.30	+1	1401455..1402363	-	302	15606985	htpX	aq_1991	-	heat shock protein X
1383	 38.27	-1	1402380..1403027	-	215	15606986	-	aq_1993	-	hypothetical protein
1384	 44.26	0	1403011..1403916	-	301	15606987	era1	aq_1994	-	GTP-binding protein Era
1385	 42.17	0	1403979..1404668	-	229	15606988	-	aq_1996	-	hypothetical protein
1386	 44.54	0	1404707..1405402	+	231	15606989	-	aq_1997	-	hypothetical protein
1387	 43.42	0	1405481..1407037	+	518	15606990	fliC	aq_1998	-	flagellin
1388	 30.87	-2	1407080..1407445	+	121	15606991	-	aq_2000	-	hypothetical protein
1389	 40.05	0	1407448..1408773	+	441	15606992	fliD	aq_2001	-	flagellar hook associated protein FliD
1390	 35.20	-2	1408770..1409144	+	124	15606993	fliS	aq_2002	-	flagellar protein FliS
1391	 45.02	0	1409442..1409903	-	153	15606994	-	aq_2004	-	hypothetical protein
1392	 39.56	-1	1409915..1410364	-	149	15606995	-	aq_2005	-	hypothetical protein
1393	 45.09	0	1410986..1411810	-	274	15606996	rpsB	aq_2007	-	30S ribosomal protein S2
1394	 45.30	0	1411902..1412879	-	325	15606997	-	aq_2009	-	hypothetical protein
1395	 45.65	0	1412896..1415712	-	938	15606998	-	aq_2011	-	hypothetical protein
1396	 46.62	0	1415787..1416200	+	137	15606999	-	aq_2013	-	hypothetical protein
1397	 43.68	0	1416211..1417263	+	350	15607000	flhB	aq_2014	-	flagellar biosynthetic protein FlhB
1398	 44.39	0	1417254..1418564	-	436	15607001	hemG	aq_2015	-	protoporphyrinogen oxidase
1399	 42.80	0	1419127..1420140	+	337	15607002	pstS	aq_2016	-	phosphate-binding periplasmic protein
1400	 43.51	0	1420127..1421089	+	320	15607003	pstC	aq_2018	-	phosphate transport system permease protein C
1401	 45.34	0	1421068..1421925	+	285	15607004	pstA	aq_2019	-	phosphate transport system permease PstA
1402	 39.14	-1	1421693..1422364	+	223	15607005	-	aq_2020	-	hypothetical protein
1403	 47.65	+1	1422407..1423621	+	404	15607006	tldD	aq_2021	-	TldD protein
1404	 47.79	+1	1424165..1425637	+	490	15607007	guaB	aq_2023	-	inosine monophosphate dehydrogenase
1405	 42.92	0	1425634..1426728	-	364	15607008	-	aq_2027	-	hypothetical protein
1406	 44.71	0	1426749..1427258	+	169	15607009	-	aq_2028	-	hypothetical protein
1407	 42.08	0	1427260..1428528	+	422	15607010	napA3	aq_2030	-	Na(+)/H(+) antiporter
1408	 45.52	0	1428661..1429062	-	133	15607011	-	aq_2031	-	hypothetical protein
1409	 45.04	0	1429084..1431501	+	805	15607012	infB	aq_2032	-	translation initiation factor IF-2
1410	 42.12	0	1431465..1432124	+	219	15607013	-	aq_2035	-	hypothetical protein
1411	 36.56	-1	1432121..1432771	+	216	15607014	-	aq_2036	-	hypothetical protein
1412	 48.78	+1	1432768..1434204	-	478	15607015	atpD	aq_2038	-	F0F1 ATP synthase subunit beta
1413	 45.55	0	1434218..1435093	-	291	15607016	atpG1	aq_2041	-	ATP synthase F1 gamma subunit
1414	 44.67	0	1435164..1435613	+	149	15607017	rplI	aq_2042	-	ribosomal protein L09
1415	 46.01	0	1435623..1436561	+	312	15607018	hemX2	aq_2043	-	cytochrome c biogenesis protein
1416	 42.83	0	1436551..1437729	-	392	15607019	-	aq_2044	-	hypothetical protein
1417	 42.01	0	1437734..1438966	-	410	15607020	folC	aq_2045	-	folylpolyglutamate synthetase
1418	 46.79	0	1438996..1441113	+	705	15607021	vacB	aq_2046	-	VacB/RNase II family 3'-5' exoribonuclease
1419	 43.56	0	1441129..1441695	+	188	15607022	-	aq_2049	-	hypothetical protein
1420	 44.08	0	1441695..1442420	+	241	15607023	flgG1	aq_2051	-	flagellar hook basal-body protein FlgG
1421	 43.09	0	1442417..1444795	-	792	15607024	recG	aq_2053	-	ATP-dependent DNA helicase RecG
1422	 35.57	-2	1444797..1448147	-	1116	15607025	-	aq_2054	-	hypothetical protein
1423	 46.70	0	1448156..1448791	-	211	15607026	-	aq_2056	-	hypothetical protein
1424	 39.61	-1	1448818..1450410	-	530	15607027	helX	aq_2057	-	DNA helicase
1425	 46.23	0	1450301..1450936	+	211	15607028	aas	aq_2058	-	2-acylglycerophosphoethanolamine acyltransferase
1426	 42.99	0	1450915..1451556	-	213	15607029	-	aq_2059	-	hypothetical protein
1427	 43.00	0	1451540..1452904	-	454	15607030	-	aq_2060	-	hypothetical protein
1428	 41.11	0	1453189..1453548	-	119	15607031	-	aq_2063	-	hypothetical protein
1429	 47.31	+1	1453545..1454975	-	476	15607032	gltD	aq_2064	-	glutamate synthase small subunit gltD
1430	 45.22	0	1455015..1455485	+	156	15607033	-	aq_2066	-	hypothetical protein
1431	 42.19	0	1455362..1455835	+	157	15607034	-	aq_2067	-	hypothetical protein
1432	 46.15	0	1455909..1456727	+	272	15607035	argB	aq_2068	-	acetylglutamate kinase
1433	 47.97	+1	1456740..1457771	+	343	15607036	obgE	aq_2069	-	GTPase ObgE
1434	 45.75	0	1457797..1458972	+	391	15607037	-	aq_2071	-	hypothetical protein
1435	 42.75	0	1458969..1460126	+	385	15607038	-	aq_2073	-	hypothetical protein
1436	 42.07	0	1460123..1461370	+	415	15607039	murD	aq_2075	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
1437	 40.33	0	1461357..1461971	-	204	15607040	trpF	aq_2076	-	phosphoribosyl anthranilate isomerase
1438	 47.21	+1	1461990..1463531	+	513	15607041	snf	aq_2077	-	SNF family Na(+)/neurotransmitter symporter
1439	 44.01	0	1463518..1464369	+	283	15607042	sppA	aq_2080	-	proteinase IV
1440	 43.87	0	1464647..1466260	+	537	15607043	-	aq_2082	-	hypothetical protein
1441	 44.23	0	1466246..1467310	-	354	15607044	hisC	aq_2084	-	histidinol-phosphate aminotransferase
1442	 39.48	-1	1467575..1468078	-	167	15607045	-	aq_2085	-	hypothetical protein
1443	 36.13	-1	1468059..1468415	-	118	15607046	-	aq_2086	-	hypothetical protein
1444	 40.40	0	1468412..1468963	-	183	15607047	-	aq_2087	-	hypothetical protein
1445	 42.01	0	1468992..1469498	+	168	15607048	-	aq_2088	-	hypothetical protein
1446	 48.00	+1	1469552..1471126	+	524	15607049	leuA2	aq_2090	-	2-isopropylmalate synthase
1447	 41.00	0	1471392..1472108	+	238	15607050	dsbC	aq_2093	-	thiol:disulfide interchange protein
1448	 44.90	0	1472329..1473573	-	414	15607051	aspC2	aq_2094	-	aminotransferase
1449	 43.80	0	1473566..1473928	-	120	15607052	dksA	aq_2095	-	dnaK suppressor protein
1450	 49.82	+1	1473947..1474504	-	185	15607053	floX	aq_2096	-	flavodoxin
1451	 45.71	0	1474521..1475360	-	279	15607054	-	aq_2098	-	hypothetical protein
1452	 46.83	0	1475353..1476834	-	493	15607055	pepA	aq_2099	-	leucine aminopeptidase
1453	 47.25	+1	1476861..1478534	+	557	15607056	carB2	aq_2101	-	carbamoyl-phosphate synthase large subunit
1454	 40.65	0	1478521..1479258	+	245	15607057	prmA	aq_2102	-	ribosomal protein L11 methyltransferase
1455	 48.66	+1	1479279..1479689	-	136	15607058	acs'	aq_2103	-	acetyl-coenzyme A synthetase c-terminal fragment
1456	 48.47	+1	1479634..1481166	-	510	15607059	acs	aq_2104	-	acetyl-coenzyme A synthetase
1457	 49.59	+1	1481860..1483323	+	487	15607060	ssf	aq_2106	-	SSF family Na(+)/solute symporter
1458	 41.29	0	1483320..1485179	+	619	15607061	-	aq_2107	-	hypothetical protein
1459	 41.86	0	1485176..1485808	+	210	15607062	-	aq_2108	-	hypothetical protein
1460	 48.24	+1	1485819..1486811	+	330	15607063	hemB	aq_2109	-	delta-aminolevulinic acid dehydratase
1461	 45.77	0	1486808..1487740	+	310	15607064	acuC2	aq_2110	-	acetoin utilization protein
1462	 39.90	0	1488032..1488808	+	258	15607065	-	aq_2113	-	hypothetical protein
1463	 45.88	0	1488786..1490156	-	456	15607066	eif	aq_2114	-	initiation factor eIF-2B alpha subunit
1464	 37.85	-1	1490168..1491274	-	368	15607067	rfaG	aq_2115	-	glucosyl transferase I
1465	 41.63	0	1491677..1492327	-	216	15607068	purC	aq_2117	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1466	 40.80	0	1492324..1492845	-	173	15607069	-	aq_2118	-	hypothetical protein
1467	 47.12	0	1492805..1493725	-	306	15607070	thiL	aq_2119	-	thiamine monophosphate kinase
1468	 45.00	0	1493722..1494990	-	422	15607071	hlyC	aq_2120	-	hemolysin homolog protein
1469	 44.88	0	1494959..1495876	-	305	15607072	abcT11	aq_2122	-	ABC transporter
1470	 44.64	0	1495878..1497248	-	456	15607073	hemN	aq_2124	-	coproporphyrinogen III oxidase
1471	 43.74	0	1497725..1499425	+	566	15607074	uvrC	aq_2126	-	repair excision nuclease subunit C
1472	 45.39	0	1499413..1499835	+	140	15607075	-	aq_2128	-	hypothetical protein
1473	 44.30	0	1500045..1500938	-	297	15607076	sbf	aq_2129	-	sodium bile acid symporter family Na(+) dependent transporter
1474	 48.68	+1	1501407..1502318	-	303	15607077	fmt	aq_2131	-	methionyl-tRNA formyltransferase
43.45	MEAN

3.70	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.