IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
46	 54.44	+1	50470..50649	+	59	56416416	-	AM070	-	hypothetical protein
47	 49.60	0	50899..54888	-	1329	56416417	-	AM071	-	hypothetical protein
48	 51.68	0	55153..61272	+	2039	56416418	-	AM072	-	hypothetical protein
49	 48.46	0	61443..61898	-	151	56416419	-	AM073	-	transcriptional regulator NrdR
50	 50.66	0	62431..62886	+	151	56416420	-	AM074	-	hypothetical protein
51	 52.59	+1	63055..64269	+	404	56416421	omp14	AM075	-	outer membrane protein 14
52	 44.78	-1	64841..65242	-	133	56416422	orfX	AM077	-	ORF X
53	 46.08	-1	67571..67978	+	135	56416423	orfX	AM082	-	ORF X
54	 51.11	0	68810..69889	+	359	56416424	recA	AM085	-	recombinase A
55	 49.75	0	69984..70586	+	200	56416425	pyrE	AM087	-	orotate phosphoribosyltransferase
56	 50.31	0	70620..71426	+	268	56416426	thiF	AM088	-	thiamine biosynthesis protein
57	 49.00	0	71782..72630	-	282	56416427	msp4	AM090	-	major surface protein 4
58	 46.43	-1	75388..76326	-	312	56416428	-	AM092	-	hypothetical protein
59	 46.11	-1	76411..76731	-	106	56416429	-	AM093	-	hypothetical protein
60	 45.59	-1	76781..76984	+	67	56416430	-	AM094	-	hypothetical protein
61	 51.72	0	77419..77766	-	115	56416431	trxA	AM096	-	thioredoxin
62	 50.31	0	77775..78587	-	270	56416432	trbG	AM097	-	conjugal transfer protein trbG precursor
63	 49.06	0	78838..79956	-	372	56416433	pdhA	AM101	-	pyruvate dehydrogenase E1 component, alpha subunit precursor
64	 49.68	0	79928..80869	-	313	56416434	rrf	AM102	-	hypothetical protein
65	 49.80	0	84517..85998	-	493	56416435	guaB	AM105	-	inosine monophosphate dehydrogenase
66	 52.42	0	86056..86820	-	254	56416436	ppnK	AM106	-	inorganic polyphosphate/ATP-NAD kinase
67	 48.20	0	86873..87094	-	73	161544994	rpmE	AM108	-	50S ribosomal protein L31
68	 51.47	0	87396..88415	+	339	56416438	fabD	AM110	-	malonyl CoA-acyl carrier protein transacylase
69	 49.53	0	88417..89052	+	211	56416439	tmk	AM111	-	thymidylate kinase
70	 49.41	0	89107..90375	+	422	56416440	-	AM112	-	hypothetical protein
71	 51.99	0	90533..91186	-	217	56416441	-	AM113	-	hypothetical protein
72	 49.43	0	91268..91795	+	175	56416442	secB	AM114	-	preprotein translocase subunit SecB
73	 47.86	0	91749..92567	+	272	56416443	-	AM116	-	hypothetical protein
74	 46.61	-1	92821..94131	-	436	56416444	mpp	AM117	-	mitochondrial processing protease
75	 51.02	0	94178..95500	+	440	56416445	-	AM118	-	hypothetical protein
76	 50.93	0	95806..97209	+	467	56416446	-	AM119	-	hypothetical protein
77	 52.43	0	97306..97923	-	205	56416447	ribA	AM120	-	riboflavin synthase subunit alpha
78	 55.74	+2	97418..98149	+	243	56416448	-	AM122	-	hypothetical protein
79	 50.29	0	98205..100475	-	756	56416449	msp1B-2	AM123	-	major surface protein 1B-2
80	 49.54	0	100706..101902	-	398	56416450	msp1bpg2	AM124	-	major surface protein 1B
81	 49.49	0	101880..105338	-	1152	56416451	mfd	AM125	-	transcription repair coupling factor
82	 49.81	0	105394..105909	+	171	56416452	rnhA	AM126	-	ribonuclease H
83	 48.50	0	105919..108918	+	999	56416453	-	AM127	-	hypothetical protein
84	 48.95	0	109082..109843	+	253	56416454	pyrH	AM128	-	uridylate kinase
85	 45.29	-1	109852..110403	+	183	56416455	frr	AM130	-	ribosome recycling factor
86	 48.50	0	110416..111114	+	232	56416456	uppS	AM131	-	putative undecaprenyl diphosphate synthase
87	 48.93	0	111068..111952	+	294	56416457	cdsA	AM132	-	phosphatidate cytidylyltransferase
88	 49.79	0	112247..114160	-	637	56416458	msp1Bpg3	AM133	-	major surface protein 1B
89	 51.40	0	114304..117225	-	973	56416459	-	AM136	-	hypothetical protein
90	 49.11	0	117369..118097	-	242	56416460	purC	AM137	-	phosphoribosoylaminoimidazole-succinocarboxamide synthase
91	 49.50	0	118215..119507	+	430	56416461	hisS	AM138	-	histidyl-tRNA synthetase
92	 47.88	0	119517..120272	-	251	56416462	-	AM139	-	hypothetical protein
93	 51.56	0	120631..121656	+	341	56416463	coxW	AM141	-	cytochrome C oxidase assembly protein
94	 52.28	0	121691..122524	+	277	56416464	panB	AM142	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
95	 48.80	0	122666..123292	-	208	56416465	ccmA	AM144	-	cytochrome c biogenesis protein CcmA
96	 53.77	+1	123325..124611	-	428	56416466	murA	AM145	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
97	 49.28	0	124613..125170	-	185	56416467	dcd	AM147	-	deoxycytidine triphosphate deaminase
98	 50.24	0	125269..126114	-	281	56416468	-	AM148	-	hypothetical protein
99	 50.90	0	126498..126776	+	92	56416469	cspA	AM149	-	cold shock protein
100	 51.05	0	126818..128905	+	695	56416470	ntrY	AM150	-	nitrogen regulation protein
101	 46.68	-1	128874..130079	+	401	56416471	rnd	AM151	-	ribonuclease D
102	 50.54	0	130162..132183	-	673	56416472	ligA	AM152	-	DNA ligase
103	 53.15	+1	132192..132524	-	110	56416473	grxC2	AM153	-	glutaredoxin-like protein GRLA
104	 50.63	0	132514..132750	-	78	56416474	-	AM154	-	hypothetical protein
105	 46.74	-1	132894..133445	-	183	56416475	-	AM156	-	hypothetical protein
106	 52.01	0	133393..134763	-	456	56416476	radA	AM157	-	DNA repair protein RadA
107	 51.76	0	135010..137652	+	880	56416477	-	AM159	-	hypothetical protein
108	 50.34	0	137659..138246	+	195	56416478	-	AM160	-	hypothetical protein
109	 47.40	0	138257..138640	+	127	56416479	rpsF	AM161	-	30S ribosomal protein S6
110	 48.68	0	138716..138943	+	75	56416480	rpsR	AM161.5	-	30S ribosomal protein S18
111	 53.24	+1	138963..139625	+	220	56416481	rplI	AM162	-	50S ribosomal protein L9
112	 53.13	+1	139651..140943	+	430	56416482	glyA	AM164	-	glycine/serine hydroxymethyltransferase
113	 49.12	0	141074..141415	+	113	56416483	-	AM166	-	hypothetical protein
114	 50.09	0	141396..143144	+	582	56416484	msbA2	AM167	-	ABC efflux transporter
115	 53.28	+1	143415..145214	+	599	56416485	sdhA	AM168	-	succinate dehydrogenase flavoprotein subunit
116	 47.53	0	145239..146027	+	262	56416486	sdhB	AM169	-	succinate dehydrogenase iron-sulfur subunit
117	 50.11	0	146028..146903	+	291	56416487	thyX	AM170	-	FAD-dependent thymidylate synthase
118	 48.39	0	147040..148221	+	393	56416488	bcr2	AM171	-	bicyclomycin resistance protein
119	 49.30	0	148363..149358	-	331	56416489	ruvB	AM172	-	Holliday junction DNA helicase B
120	 53.05	+1	149355..149927	-	190	56416490	ruvA	AM173	-	holliday junction DNA helicase
121	 54.58	+1	149924..150676	-	250	56416491	ccmc	AM175	-	heme exporter protein C
122	 50.20	0	150861..151595	+	244	56416492	gmk	AM177	-	guanylate kinase
123	 54.45	+1	151721..152833	+	370	56416493	-	AM178	-	hypothetical protein
124	 51.22	0	152987..153886	+	299	56416494	folD	AM179	-	methylenetetrahydrofolate dehydrogenase
125	 50.09	0	154357..156576	+	739	56416495	msp1B-1	AM180	-	major surface protein 1B-1
126	 53.86	+1	157060..159456	+	798	56416496	-	AM185	-	hypothetical protein
127	 50.67	0	159495..159944	-	149	56416497	msp1Bpg1	AM188	-	major surface protein 1B
128	 50.71	0	160185..160817	-	210	56416498	-	AM189	-	hypothetical protein
129	 52.96	+1	161059..161598	-	179	56416499	cycM	AM190	-	cytochrome C
130	 50.10	0	161998..163518	-	506	56416500	nuoL2	AM193	-	NADH dehydrogenase I chain L
131	 50.58	0	163888..166542	-	884	56416501	ppdK	AM195	-	pyruvate phosphate dikinase
132	 45.49	-1	166838..167347	-	169	56416502	-	AM197	-	hypothetical protein
133	 49.84	0	167350..167973	-	207	56416503	-	AM198	-	hypothetical protein
134	 49.28	0	168165..169142	-	325	56416504	aspS	AM199	-	asparaginyl-tRNA synthetase
135	 48.37	0	169054..169944	-	296	56416505	aspS	AM200	-	asparaginyl-tRNA synthetase
136	 50.85	0	170363..170950	+	195	56416506	-	AM202	-	hypothetical protein
137	 50.27	0	170965..171891	+	308	56416507	gshB	AM203	-	glutathione synthetase
138	 49.55	0	172027..173031	+	334	56416508	ddlB	AM205	-	D-alanine--D-alanine ligase
139	 47.55	0	173024..173797	+	257	56416509	ftsQ	AM206	-	cell division protein
140	 47.97	0	174038..175438	+	466	56416510	ntrX	AM207	-	nitrogen assimilation regulatory protein
141	 44.62	-1	175825..176214	+	129	56416511	orfX	AM210	-	ORF X
142	 51.88	0	177599..179011	-	470	56416512	gor	AM215	-	glutathione reductase
143	 51.92	0	179210..181738	+	842	56416513	-	AM216	-	hypothetical protein
144	 48.74	0	181807..183273	+	488	56416514	-	AM217	-	hypothetical protein
145	 43.11	-2	183273..183896	+	207	56416515	-	AM218	-	hypothetical protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.