IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 46.97	0	1082130..1084724	-	864	56417214	polA	AM1214	-	DNA polymerase I
845	 52.45	0	1085541..1085927	+	128	56417215	-	AM1216	-	hypothetical protein
846	 53.91	+1	1085950..1086858	+	302	56417216	argF	AM1217	-	ornithine carbamoyltransferase
847	 47.13	0	1086868..1087983	+	371	56417217	recF	AM1218	-	recombination protein F
848	 46.75	-1	1087980..1088441	-	153	56417218	omp6	AM1219	-	outer membrane protein 6
849	 53.65	+1	1088481..1089671	-	396	56417219	omp7	AM1220	-	outer membrane protein 7
850	 53.33	+1	1089736..1090935	-	399	56417220	omp8	AM1221	-	outer membrane protein 8
851	 52.97	+1	1090999..1092210	-	403	56417221	omp9	AM1222	-	outer membrane protein 9
852	 52.10	0	1092273..1093535	-	420	56417222	omp10	AM1223	-	outer membrane protein 10
853	 52.49	0	1093976..1094518	-	180	56417223	-	AM1225	-	hypothetical protein
854	 51.17	0	1094876..1095514	+	212	56417224	-	AM1226	-	hypothetical protein
855	 48.05	0	1095979..1096902	-	307	56417225	-	AM1228	-	hypothetical protein
856	 47.62	0	1097053..1098417	-	454	56417226	mviN	AM1229	-	virulence factor MVIN
857	 50.35	0	1098643..1099500	+	285	56417227	lgt	AM1231	-	prolipoprotein diacylglyceryl transferase
858	 50.93	0	1099740..1099955	+	71	56417228	-	AM1232	-	hypothetical protein
859	 47.77	0	1100204..1100494	-	96	161544978	rpsT	AM1233	-	30S ribosomal protein S20
860	 47.52	0	1100613..1101338	-	241	56417230	plsC	AM1235	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
861	 49.64	0	1101370..1101927	+	185	56417231	def	AM1236	-	N-formylmethionylaminoacyl-tRNA deformylase
862	 52.12	0	1102174..1103046	+	290	56417232	-	AM1237	-	hypothetical protein
863	 49.52	0	1103188..1103916	+	242	56417233	-	AM1238	-	hypothetical protein
864	 54.39	+1	1104007..1104234	-	75	56417234	-	AM1239	-	hypothetical protein
865	 48.79	0	1104293..1104499	-	68	56417235	-	AM1240	-	hypothetical protein
866	 46.67	-1	1104735..1105244	-	169	56417236	-	AM1241	-	hypothetical protein
867	 48.92	0	1105289..1106398	-	369	56417237	-	AM1242	-	hypothetical protein
868	 47.44	0	1106811..1108766	-	651	56417238	uvrB	AM1243	-	excinuclease ABC subunit B
869	 46.95	0	1108831..1110336	+	501	56417239	secD	AM1245	-	preprotein translocase subunit SecD
870	 50.71	0	1110826..1112649	+	607	56417240	-	AM1248	-	hypothetical protein
871	 47.01	0	1113315..1113548	+	77	56417241	orfY	AM1251	-	ORF Y
872	 45.13	-1	1113621..1114010	+	129	56417242	orfX	AM1253	-	ORF X
873	 51.11	0	1114075..1115559	-	494	56417243	-	AM1254	-	hypothetical protein
874	 52.32	0	1115669..1116658	-	329	56417244	omp11	AM1255	-	outer membrane protein 11
875	 48.60	0	1116852..1117709	-	285	56417245	omp12	AM1257	-	outer membrane protein 12
876	 52.79	+1	1117917..1118975	-	352	56417246	omp13	AM1258	-	outer membrane protein 13
877	 51.20	0	1119261..1120514	+	417	56417247	ftsZ	AM1261	-	cell division protein FtsZ
878	 44.52	-1	1120891..1121355	+	154	56417248	-	AM1264	-	hypothetical protein
879	 46.45	-1	1121429..1122244	+	271	56417249	parA	AM1266	-	chromosome partitioning protein
880	 48.55	0	1122241..1123068	+	275	56417250	parB	AM1267	-	chromosome partitioning protein
881	 49.39	0	1123080..1123652	+	190	56417251	rimM	AM1269	-	16S rRNA processing protein
882	 49.15	0	1123649..1124356	+	235	56417252	trmD	AM1270	-	tRNA (guanine-N1)-methyltransferase
883	 47.16	0	1124349..1124753	+	134	56417253	rplS	AM1271	-	50S ribosomal protein L19
884	 48.85	0	1124760..1125281	-	173	56417254	cinA	AM1272	-	competence / damage-inducible protein
885	 46.26	-1	1125347..1127257	+	636	56417255	thrS	AM1273	-	threonyl-tRNA synthetase
886	 43.82	-2	1127287..1127820	+	177	56417256	infC	AM1274	-	translation initiation factor IF-3
887	 51.32	0	1128227..1128682	-	151	56417257	-	AM1275	-	hypothetical protein
888	 50.85	0	1128686..1129387	-	233	56417258	-	AM1276	-	hypothetical protein
889	 48.96	0	1129505..1130515	-	336	56417259	asd	AM1277	-	aspartate-semialdehyde dehydrogenase
890	 48.54	0	1130517..1130825	-	102	56417260	-	AM1278	-	hypothetical protein
891	 49.89	0	1130831..1132255	-	474	56417261	dnaZ	AM1280	-	DNA polymerase III gamma subunit
892	 47.16	0	1132441..1133445	-	334	56417262	gapB	AM1283	-	NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase
893	 48.25	0	1133834..1134778	+	314	56417263	-	AM1285	-	hypothetical protein
894	 50.23	0	1134794..1135450	+	218	56417264	-	AM1286	-	isoprenoid biosynthesis protein
895	 44.04	-1	1135475..1136632	-	385	56417265	ftsW	AM1287	-	cell division protein
896	 47.46	0	1136614..1137816	-	400	56417266	metK	AM1288	-	S-adenosylmethionine synthetase
897	 44.39	-1	1138038..1139204	+	388	56417267	ubiH	AM1289	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
898	 39.41	-2	1139216..1139824	-	202	56417268	-	AM1292	-	hypothetical protein
899	 43.66	-2	1140100..1140951	+	283	56417269	glyQ	AM1294	-	glycyl-tRNA synthetase subunit alpha
900	 39.71	-2	1140953..1143037	+	694	56417270	glyS	AM1295	-	glycyl-tRNA synthetase beta chain
901	 41.84	-2	1143119..1144258	+	379	56417271	dnaJ	AM1296	-	DNAJ protein
902	 36.87	-2	1144277..1145095	-	272	56417272	nadC	AM1297	-	nicotinate-nucleotide pyrophosphorylase
903	 33.50	-2	1145154..1145750	+	198	56417273	-	AM1298	-	hypothetical protein
904	 38.96	-2	1145742..1146239	-	165	56417274	ruvC	AM1299	-	holliday (crossover) junction endodeoxyribonuclease
905	 38.71	-2	1146258..1147076	-	272	56417275	coxC	AM1300	-	cytochrome C oxidase subunit III
906	 39.60	-2	1147146..1147943	-	265	56417276	hemE	AM1301	-	uroporphyrinogen decarboxylase
907	 44.56	-1	1148564..1149445	+	293	56417277	-	AM1303	-	hypothetical protein
908	 48.17	0	1149432..1149950	-	172	56417278	-	AM1304	-	hypothetical protein
909	 48.87	0	1149934..1151130	-	398	161544977	-	AM1305	-	hypothetical protein
910	 47.94	0	1151233..1152033	+	266	56417280	-	AM1306	-	hypothetical protein
911	 46.50	-1	1152053..1153009	+	318	56417281	nadA	AM1307	-	quinolinate synthetase
912	 47.04	0	1153031..1153402	-	123	56417282	fdxA	AM1309	-	ferredoxin II
913	 45.99	-1	1153528..1154499	+	323	56417283	ilvC	AM1310	-	ketol-acid reductoisomerase
914	 40.70	-2	1154526..1154783	-	85	56417284	infC	AM1311	-	translation initiation factor IF-3
915	 49.24	0	1154957..1157377	-	806	56417285	virD4	AM1312	-	VirD4 protein
916	 50.30	0	1157425..1158438	-	337	56417286	virB11	AM1313	-	VirB11 protein
917	 50.52	0	1158480..1159817	-	445	56417287	virB10	AM1314	-	VirB10 protein
918	 47.98	0	1159825..1160664	-	279	56417288	virB9	AM1315	-	VirB9 protein
919	 46.23	-1	1160651..1161340	-	229	56417289	virB8	AM1316	-	VirB8 protein
920	 49.91	0	1161459..1162592	-	377	56417290	ribA	AM1317	-	GTP cyclohydrolase II
921	 48.87	0	1162709..1163950	-	413	56417291	-	AM1319	-	hypothetical protein
922	 52.46	0	1163892..1164419	-	175	56417292	-	AM1320	-	hypothetical protein
923	 51.80	0	1164480..1165313	-	277	56417293	dapF	AM1323	-	diaminopimelate epimerase
924	 56.76	+2	1165325..1166041	-	238	56417294	-	AM1324	-	hypothetical protein
925	 48.72	0	1166183..1166611	-	142	56417295	-	AM1325	-	hypothetical protein
926	 50.95	0	1167047..1168204	+	385	56417296	pgk	AM1326	-	phosphoglycerate kinase
927	 48.74	0	1168396..1169589	-	397	56417297	xseA	AM1327	-	exodeoxyribonuclease large subunit
928	 47.23	0	1169564..1170232	-	222	56417298	-	AM1328	-	hypothetical protein
929	 52.09	0	1170411..1171247	+	278	161544976	dapD	AM1331	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
930	 49.32	0	1171248..1172579	+	443	56417300	trmE	AM1332	-	tRNA modification GTPase TrmE
931	 50.54	0	1172736..1173293	-	185	56417301	dfp	AM1335	-	phosphopantothenoylcysteine decarboxylase
932	 49.48	0	1173303..1175402	+	699	56417302	recG	AM1336	-	ATP-dependent DNA helicase
933	 51.38	0	1175585..1176565	+	326	56417303	-	AM1337	-	hypothetical protein
934	 51.84	0	1176700..1178109	-	469	56417304	purF	AM1338	-	amidophosphoribosyltransferase
935	 51.52	0	1178260..1178820	-	186	56417305	pth	AM1339	-	peptidyl-tRNA hydrolase
936	 53.58	+1	1178825..1179481	-	218	56417306	rplY	AM1340	-	50S ribosomal protein L25/general stress protein Ctc
937	 47.95	0	1179523..1179741	-	72	56417307	-	AM1341	-	hypothetical protein
938	 52.67	+1	1183255..1184004	-	249	56417308	-	AM1346	-	hypothetical protein
939	 52.29	0	1183943..1185145	-	400	56417309	dapE	AM1347	-	succinyl-diaminopimelate desuccinylase
940	 51.42	0	1185315..1187006	-	563	56417310	kefB	AM1348	-	glutathione-regulated potassium-efflux system protein
941	 52.84	+1	1187020..1187583	-	187	56417311	-	AM1349	-	hypothetical protein
942	 47.20	0	1187811..1188257	-	148	56417312	-	AM1350	-	hypothetical protein
943	 52.73	+1	1188388..1189413	-	341	56417313	pdhB	AM1351	-	pyruvate dehydrogenase subunit beta
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.