IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
818	 51.13	0	1053149..1053721	-	190	56417188	atpH	AM1175	-	ATP synthase delta chain
819	 46.83	0	1054297..1054548	-	83	56417189	-	AM1179	-	hypothetical protein
820	 48.91	0	1054552..1055790	-	412	56417190	-	AM1180	-	hypothetical protein
821	 47.94	0	1055787..1056539	-	250	56417191	-	AM1181	-	hypothetical protein
822	 46.37	-1	1056544..1057770	-	408	56417192	-	AM1183	-	hypothetical protein
823	 44.48	-1	1058051..1059100	+	349	56417193	-	AM1185	-	hypothetical protein
824	 49.11	0	1059095..1060324	-	409	56417194	-	AM1186	-	hypothetical protein
825	 50.48	0	1060680..1061933	-	417	56417195	gltA	AM1187	-	citrate synthase
826	 50.82	0	1061970..1063559	-	529	56417196	guaA	AM1188	-	bifunctional GMP synthase/glutamine amidotransferase protein
827	 52.81	+1	1063676..1063906	-	76	56417197	-	AM1189	-	hypothetical protein
828	 51.52	0	1064038..1064433	+	131	56417198	-	AM1191	-	hypothetical protein
829	 52.00	0	1065049..1066350	+	433	56417199	pdhC	AM1192	-	branched-chain alpha-keto acid dehydrogenase subunit E2
830	 49.41	0	1066507..1066761	-	84	56417200	-	AM1193	-	hypothetical protein
831	 52.00	0	1066669..1067568	+	299	161544979	fbaB	AM1194	-	fructose-bisphosphate aldolase
832	 48.39	0	1067822..1069627	-	601	56417202	pbpA1	AM1196	-	penicillin-binding protein
833	 49.15	0	1069608..1070543	-	311	56417203	secF	AM1197	-	preprotein translocase subunit SecF
834	 50.92	0	1070689..1071069	+	126	56417204	-	AM1200	-	hypothetical protein
835	 48.26	0	1071072..1072304	-	410	56417205	hemA	AM1202	-	5-aminolevulinate synthase
836	 51.16	0	1072474..1073718	-	414	56417206	tyrS	AM1205	-	tyrosyl-tRNA synthetase
837	 49.61	0	1074028..1075434	+	468	56417207	glnA	AM1206	-	glutamine synthetase
838	 46.65	-1	1075445..1076473	+	342	56417208	mraY1	AM1207	-	phospho-n-acetylmuramoyl-pentapeptide-transferase
839	 47.46	0	1076483..1077466	+	327	56417209	ispB	AM1208	-	octaprenyl-diphosphate synthase
840	 49.52	0	1077541..1079622	-	693	56417210	-	AM1209	-	hypothetical protein
841	 49.58	0	1079749..1080468	-	239	56417211	mkl	AM1210	-	ribonucleotide transport ATP-binding protein
842	 49.87	0	1080473..1081252	-	259	56417212	-	AM1212	-	hypothetical protein
843	 48.40	0	1081271..1082053	-	260	56417213	rpe	AM1213	-	ribulose-phosphate 3-epimerase
844	 46.97	0	1082130..1084724	-	864	56417214	polA	AM1214	-	DNA polymerase I
845	 52.45	0	1085541..1085927	+	128	56417215	-	AM1216	-	hypothetical protein
846	 53.91	+1	1085950..1086858	+	302	56417216	argF	AM1217	-	ornithine carbamoyltransferase
847	 47.13	0	1086868..1087983	+	371	56417217	recF	AM1218	-	recombination protein F
848	 46.75	-1	1087980..1088441	-	153	56417218	omp6	AM1219	-	outer membrane protein 6
849	 53.65	+1	1088481..1089671	-	396	56417219	omp7	AM1220	-	outer membrane protein 7
850	 53.33	+1	1089736..1090935	-	399	56417220	omp8	AM1221	-	outer membrane protein 8
851	 52.97	+1	1090999..1092210	-	403	56417221	omp9	AM1222	-	outer membrane protein 9
852	 52.10	0	1092273..1093535	-	420	56417222	omp10	AM1223	-	outer membrane protein 10
853	 52.49	0	1093976..1094518	-	180	56417223	-	AM1225	-	hypothetical protein
854	 51.17	0	1094876..1095514	+	212	56417224	-	AM1226	-	hypothetical protein
855	 48.05	0	1095979..1096902	-	307	56417225	-	AM1228	-	hypothetical protein
856	 47.62	0	1097053..1098417	-	454	56417226	mviN	AM1229	-	virulence factor MVIN
857	 50.35	0	1098643..1099500	+	285	56417227	lgt	AM1231	-	prolipoprotein diacylglyceryl transferase
858	 50.93	0	1099740..1099955	+	71	56417228	-	AM1232	-	hypothetical protein
859	 47.77	0	1100204..1100494	-	96	161544978	rpsT	AM1233	-	30S ribosomal protein S20
860	 47.52	0	1100613..1101338	-	241	56417230	plsC	AM1235	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
861	 49.64	0	1101370..1101927	+	185	56417231	def	AM1236	-	N-formylmethionylaminoacyl-tRNA deformylase
862	 52.12	0	1102174..1103046	+	290	56417232	-	AM1237	-	hypothetical protein
863	 49.52	0	1103188..1103916	+	242	56417233	-	AM1238	-	hypothetical protein
864	 54.39	+1	1104007..1104234	-	75	56417234	-	AM1239	-	hypothetical protein
865	 48.79	0	1104293..1104499	-	68	56417235	-	AM1240	-	hypothetical protein
866	 46.67	-1	1104735..1105244	-	169	56417236	-	AM1241	-	hypothetical protein
867	 48.92	0	1105289..1106398	-	369	56417237	-	AM1242	-	hypothetical protein
868	 47.44	0	1106811..1108766	-	651	56417238	uvrB	AM1243	-	excinuclease ABC subunit B
869	 46.95	0	1108831..1110336	+	501	56417239	secD	AM1245	-	preprotein translocase subunit SecD
870	 50.71	0	1110826..1112649	+	607	56417240	-	AM1248	-	hypothetical protein
871	 47.01	0	1113315..1113548	+	77	56417241	orfY	AM1251	-	ORF Y
872	 45.13	-1	1113621..1114010	+	129	56417242	orfX	AM1253	-	ORF X
873	 51.11	0	1114075..1115559	-	494	56417243	-	AM1254	-	hypothetical protein
874	 52.32	0	1115669..1116658	-	329	56417244	omp11	AM1255	-	outer membrane protein 11
875	 48.60	0	1116852..1117709	-	285	56417245	omp12	AM1257	-	outer membrane protein 12
876	 52.79	+1	1117917..1118975	-	352	56417246	omp13	AM1258	-	outer membrane protein 13
877	 51.20	0	1119261..1120514	+	417	56417247	ftsZ	AM1261	-	cell division protein FtsZ
878	 44.52	-1	1120891..1121355	+	154	56417248	-	AM1264	-	hypothetical protein
879	 46.45	-1	1121429..1122244	+	271	56417249	parA	AM1266	-	chromosome partitioning protein
880	 48.55	0	1122241..1123068	+	275	56417250	parB	AM1267	-	chromosome partitioning protein
881	 49.39	0	1123080..1123652	+	190	56417251	rimM	AM1269	-	16S rRNA processing protein
882	 49.15	0	1123649..1124356	+	235	56417252	trmD	AM1270	-	tRNA (guanine-N1)-methyltransferase
883	 47.16	0	1124349..1124753	+	134	56417253	rplS	AM1271	-	50S ribosomal protein L19
884	 48.85	0	1124760..1125281	-	173	56417254	cinA	AM1272	-	competence / damage-inducible protein
885	 46.26	-1	1125347..1127257	+	636	56417255	thrS	AM1273	-	threonyl-tRNA synthetase
886	 43.82	-2	1127287..1127820	+	177	56417256	infC	AM1274	-	translation initiation factor IF-3
887	 51.32	0	1128227..1128682	-	151	56417257	-	AM1275	-	hypothetical protein
888	 50.85	0	1128686..1129387	-	233	56417258	-	AM1276	-	hypothetical protein
889	 48.96	0	1129505..1130515	-	336	56417259	asd	AM1277	-	aspartate-semialdehyde dehydrogenase
890	 48.54	0	1130517..1130825	-	102	56417260	-	AM1278	-	hypothetical protein
891	 49.89	0	1130831..1132255	-	474	56417261	dnaZ	AM1280	-	DNA polymerase III gamma subunit
892	 47.16	0	1132441..1133445	-	334	56417262	gapB	AM1283	-	NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase
893	 48.25	0	1133834..1134778	+	314	56417263	-	AM1285	-	hypothetical protein
894	 50.23	0	1134794..1135450	+	218	56417264	-	AM1286	-	isoprenoid biosynthesis protein
895	 44.04	-1	1135475..1136632	-	385	56417265	ftsW	AM1287	-	cell division protein
896	 47.46	0	1136614..1137816	-	400	56417266	metK	AM1288	-	S-adenosylmethionine synthetase
897	 44.39	-1	1138038..1139204	+	388	56417267	ubiH	AM1289	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
898	 39.41	-2	1139216..1139824	-	202	56417268	-	AM1292	-	hypothetical protein
899	 43.66	-2	1140100..1140951	+	283	56417269	glyQ	AM1294	-	glycyl-tRNA synthetase subunit alpha
900	 39.71	-2	1140953..1143037	+	694	56417270	glyS	AM1295	-	glycyl-tRNA synthetase beta chain
901	 41.84	-2	1143119..1144258	+	379	56417271	dnaJ	AM1296	-	DNAJ protein
902	 36.87	-2	1144277..1145095	-	272	56417272	nadC	AM1297	-	nicotinate-nucleotide pyrophosphorylase
903	 33.50	-2	1145154..1145750	+	198	56417273	-	AM1298	-	hypothetical protein
904	 38.96	-2	1145742..1146239	-	165	56417274	ruvC	AM1299	-	holliday (crossover) junction endodeoxyribonuclease
905	 38.71	-2	1146258..1147076	-	272	56417275	coxC	AM1300	-	cytochrome C oxidase subunit III
906	 39.60	-2	1147146..1147943	-	265	56417276	hemE	AM1301	-	uroporphyrinogen decarboxylase
907	 44.56	-1	1148564..1149445	+	293	56417277	-	AM1303	-	hypothetical protein
908	 48.17	0	1149432..1149950	-	172	56417278	-	AM1304	-	hypothetical protein
909	 48.87	0	1149934..1151130	-	398	161544977	-	AM1305	-	hypothetical protein
910	 47.94	0	1151233..1152033	+	266	56417280	-	AM1306	-	hypothetical protein
911	 46.50	-1	1152053..1153009	+	318	56417281	nadA	AM1307	-	quinolinate synthetase
912	 47.04	0	1153031..1153402	-	123	56417282	fdxA	AM1309	-	ferredoxin II
913	 45.99	-1	1153528..1154499	+	323	56417283	ilvC	AM1310	-	ketol-acid reductoisomerase
914	 40.70	-2	1154526..1154783	-	85	56417284	infC	AM1311	-	translation initiation factor IF-3
915	 49.24	0	1154957..1157377	-	806	56417285	virD4	AM1312	-	VirD4 protein
916	 50.30	0	1157425..1158438	-	337	56417286	virB11	AM1313	-	VirB11 protein
917	 50.52	0	1158480..1159817	-	445	56417287	virB10	AM1314	-	VirB10 protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.